#NEXUS [TITLE: NoName] begin data; dimensions ntax=44 nchar=132423; format interleave datatype=dna gap=- missing=n symbols="ACGTN"; matrix human AAACTCCAAA TAAGTTGAGA ACAAACCTGA GATT-GTCCA TTGGGTGGCA chimp ---------- ---------- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAACTCCAAA TAAGTTGAGA ACAAACCTGA GATT-GTCCA TTGGGTGGCA colobus_monkey AAACTCCAAG TAAGTTGAGA ACAAACCTGA GATT-GTCCA TTGGGTGGCA vervet ---------- ---------- ---------- ---------- ---------- baboon AAACTCCAAA TAAGTTGAGA ACAAACCTGA GATT-GTCCA TTGGGTGGCA macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ATACTCCAAA TAAGTTGAGA ACAAACCTGA GATT-GTCCA TTGGGTGGCA squirrel_monkey AAACTTCAAA TAAGTTGAGA ACAAACCTGG TATT-GTCCA TTGGGTGGCA marmoset AAACCCCAAA TAAGTTGAGA ACAAACCTGA GATT-GTCCA TTGGGTGGCA galago AAACTCCAAA CATGTTGAGA ACAAATCTGA GATT-ACCCA CTAGGTGGCA mouse_lemur AAACTCCAAA TGCATTGAGA ACAAGTCTGA G-TT-GCCCA TTAGATGGCA lemur AAACTCCAAA TACATTGAGA ACAAGTCTGA G-TT-GCCCA TTAGGTGGCA rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- --TT-GTCCA TTAGGTGGCA guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- --TT-GTCCA TTAGGTGGCA rfbat AAACTCCAAA GAAGTTGAGA ATGAATCTGA GATA-GTCCA TTAGGTGGCA cpbat ---------- ---------- ---------- ---------- ---------- cat AAACTCCAAA TAAGCT---- --------GA GACT-TTCCA TTAGGTGGCA clouded_leopard AAAC------ -AAGCT---- --------GA GACT-TTCCA TTAGGTGGCA ferret ---------- ---------- ---------- --TT-TTCCA TTAGGTGGCA dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian AAATTCCCAA TAAGCTGAGA A------CGA GATTATTCCA TTAGGTGGCA sheep AAATTCAAAA TAAGCTGAGA A------TGA GATTATTCCA TTAGGTGGCA cow ---------- ---------- ---------- --TTATTCCA TTAGGTGGCA horse ---------- ---------- ---------- ---------- ---------- armadillo AAACTCCAAA TAAGTTGAGA GTGAATCTCA TATT-TTCCA TTAGGTGGCA elephant AAACTCCAAG -AAGTTGAGA ACAAATCTGA GATT-TTCCA TTAGGTGGCA tenrec ---------- ---------- ---------- --TT-CTCCA TTAGGTGGCA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GCAAAACTCT TCCATACCAC CAGGGGTCTC CATTCTCTTT TCTGG----T chimp ---------- ---------- ---------- --TTCTCTT- -CTGG----T gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon GCAAAACTCT TCCATACCAC CAGGGGTCTC CATTCTCTT- -CTAG----T colobus_monkey GCAAAACTCT TCCATACCAC CAGGGGTCTC CATTGTCTT- -CTAG----T vervet ---------- ---------- ---------- ---------- ---------- baboon GCAAAACTCT TCCATACCAC CAGGGGTCTC CATTCTCTT- -CTAG----T macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- --TTTTCTT- -CTAG----T owl_monkey GCAAAACTCT TCCATACCAC CAGGGGTCTC CATTTTCTT- -CTAG----T squirrel_monkey GCAAAACTCT TCCATACCAC CAGGGGTCTC TATTTTCTT- -CTAG----T marmoset GCAAAACTCT TCTGTACCAC CAGGGGTCTC CATTTTCTT- -CTAG----T galago GCAAAACTCT TCCATACCAC TAGGGGTCTC CATTTTCTT- -CTAG----T mouse_lemur GCAAAACTCT TCCTTACCAC CAGGGGTCTC CAttt-ctt- -ctag----t lemur GCAAAACTCT TCCTTACCAC CAGGGGTCTC CAttttctt- -ctag----t rabbit ---------- ------CCAC CAGGGGTCTC CATTTTCTT- -CTAG----T st_squirrel GCAAAACTCT TCCATACCAT CAGGAGTGTC CAttttctt- -ctag----t guinea_pig ---------- ---------- ---------- --TTTTCTT- -CCAG----T rat ---------- ---------- ---------- --TTTTTTT- -CTAG----T mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew GCAAAGCTCT TTC---TCAC CAGGGATC-- ---------- ---------- rfbat GCAAAACTCT TCCATACCAC CAGGGGTCTC CATCTTCAT- -CTAG----T cpbat ---------- ---------- ---------- ---------- ---------- cat GCAAAACTCT TTCATACCAC CAGGGGTCTC CCttttctt- -ccag----t clouded_leopard GCAAAACTCT TTCATACCAC CAGGGGTCTC CCttttctt- -ccag----t ferret GCAAAACCCT GTCATACCAC CAGGGGTCTC CAtttattt- -CCAA----T dog ---------- ------CCAC CAGGGGTCTC CA-------- -CCAG----A pig ---------- ---------- ---------- ---------- ---------- muntjak_indian GCAAAACACT TCCAAACCAC CAGGGGTCTC TATTTTCTT- -CCAGTACTT sheep GCAAAACACT GCCAAACCAC CAGGGGTCTC TATTTTCGT- -CTAG----T cow GCAAAACACT GCCAAACCAC CAGGGGTCTC CATTTTCTT- -CTAG----T horse ---------- ---------- ---------- ---------- ---------- armadillo GCAAAACTCT TCCATACCAC CAGGGGTCTC CAttttctt- -ccag----t elephant GCAAAACTCT TCCATACCAC CAGGGGTCTC CATTTTCTT- -CCTG----T tenrec GCAAAACTCT TCCCTA---- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ACTTA-ATAA TTTCATTTAA ACATAT---- ---TGACTTT ATT------T chimp ACTTA-ATAA TTTCATTTAA ACATAT---- ---TGACT-- ---------T gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ACTTA-ATAA TTTCATTTAA ACATAT---- ---TGACT-- ---------T colobus_monkey ACTTA-ATAA TTTCATTTAA ACATAT---- ---TGACT-- ---------T vervet ---------- ---------- ---------- ---------- ---------- baboon ACTTA-ATAA TTTCATTCAA ACATAT---- ---TGACT-- ---------T macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ATTTA-GTAA TATAATTTAA ACATAT---- ---TGACT-- ---------T owl_monkey ATTTA-GTAA TATAATTTAA ACATAT---- ---TGACT-- ---------T squirrel_monkey ATTTA-TTAA TGTAATTTAA ACATAC---- ---TGATT-- ---------T marmoset ATTTA-GTAA TATAATTTAA ACATAT---- ---TGACT-- ---------T galago ACTTAAATGA TTTCATGTAA ATACAT---- ---AGACT-- ---------T mouse_lemur acttacatga cttcacttaa atATAT---- ---AGACT-- ---------T lemur acttacatga cttcatttaa atATAT---- ---AGACT-- ---------T rabbit ACTTAAATGA TTTCATTTCA ATATAT---- ---TGACT-- ---------T st_squirrel acttaaatta tttcatttta atATAT---- ---TGACT-- ---------T guinea_pig ACTTAAGTAG TATCACTGAA ATATATACCA CTCTGACT-- ---------T rat ACTTAAAGGA TTTCATTTAA ATATAT---- ---TGACT-- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------T rfbat ACTTAAATGA TTTCATTTAA GTATAT---- ---TGACT-- ---------T cpbat ---------- ---------- ---------- ---------- ---------- cat acctaaatga tttcatttaa atATAT---- ---TGAGT-- ---------T clouded_leopard acctaaatga tttcatttaa atATAT---- ---TGAGT-- ---------T ferret ACTCAAATGA TTTCACTTAA ATATAT---- ---TGATT-- ---------T dog ACTCAAATGA TTTCATTTAA ATATAT---- ---TGACT-- ---------T pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ACTTACATGA TTTCATCTAA ATCCAC---- ---TGACT-- ---------T sheep ACTTACATGA TTTTATTTAA AGCCCC---- ---TGAAT-- ---------T cow ACTTACGTGA TTTTATTTAA ATCCAC---- ---TGACT-- ---------T horse ---------- ---------- ---------- ---------- ---------- armadillo tcttaaacaa tttcatttaa atATAT---- ---TGACT-- ---------- elephant ACTTAAATTA TTTTATTTAA ATATAT---- ---TGACT-- ---------- tenrec ACTTCAATTA TTTTAGTTAA ATATAT---- ---TGACT-- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---TGTGAAT opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTA--AGAT TACAGAGAAT CAAAAGCAGA TGAAATATGG TGGAAAATTT chimp TTTA--AGAT TACAGAGA-- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTTA--AGAT TACAGAGA-- ---------- ---------- ---------- colobus_monkey TTTA--AGAT TACGGAGA-- ---------- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon TTTA--AGAT TACAGAGA-- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi TTTA--AGAT TACAGAGA-- ---------- ---------- ---------- owl_monkey TTTA--AGAT TACAGAGA-- ---------- ---------- ---------- squirrel_monkey TTTA--AGAT TACAGAGA-- ---------- ---------- ---------- marmoset TTTA--AGAT TACAGAGA-- ---------- ---------- ---------- galago CTTG--AGAT TACAGAGA-- ---------- ---------- ---------- mouse_lemur TTTG--AGAT TACAGAGG-- ---------- ---------- ---------- lemur TTTG--AGAT TACAGAGG-- ---------- ---------- ---------- rabbit TTTA--AGGT TACAGAGA-- ---------- ---------- ---------- st_squirrel TTCTA-AGGT TACAGAGA-- ---------- ---------- ---------- guinea_pig TGAGGGGAGT TACACATA-- ---------- ---------- ---------- rat ------AGGT CACAGAGA-- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew TTTT--AAGT TTCAGAAA-- ---------- ---------- ---------- rfbat TTTA--AAGT TACAGAGA-- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat TTTA--AGGT TACAGAGA-- ---------- ---------- ---------- clouded_leopard TTTA--AGGT TACAGAGA-- ---------- ---------- ---------- ferret TTTA--AGGT TACACAGA-- ---------- ---------- ---------- dog TTTA--AGGC TACAAAGA-- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian TTTA--AGGT TACAGGGA-- ---------- ---------- ---------- sheep TTTA--AGGT TACAGAGA-- ---------- ---------- ---------- cow TTTA--AGGT TACAGAGA-- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo TTTT--A--- ---AGAGA-- ---------- ---------- ---------- elephant TTTA--AGGT TACAGAGA-- ---------- ---------- ---------- tenrec TTTA--AGGT TATAGAGA-- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis CTAA--AGAT AATAGACA-- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GTTGCACAAT TTACTTTTCA CCTTATTTGG CATATTTTTC ACATCGTTAT chimp ---------- ---------- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ---------- ---------- ---------- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTGACTAAT CTATTTGTTC AAATGACTAC ATCCTCTTAC GGTAGAAGCA chimp ---------- ---------- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ---------- ---------- ---------- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AATTTTTATC CAGGGATTAA AAGCCTGAGT TTTTCAGAAC TATAATTGAT chimp ---------- ---------- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ---------- ---------- ---------- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTCCTTATA CTAAAATAGT ATCCCTTTTT AGGGATGATT CAACTTATGA chimp ---------- ---------- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ---------- ---------- ---------- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAAATAAATG AACTGAGGCT TACCAGAGAC TCATATTTAT ATTACAGTTA chimp ---------- ---------- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ---------- ---------- ---------- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGAGGCAATC TGACAATGAC AACATTTCCA TTAACCATAA CACACTGAGC chimp ---------- ---------- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ---------- ---------- ---------- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TCTGTTTTAA AAATGATTCC TAGCCAATTA CCTC------ ---------- chimp ---------- ------TTCC TAGCCAATTA CCTC------ ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ------TTCC TAGCCAATTA CCTC------ ---------- colobus_monkey ---------- ------TTCC TAGCCAATTA CCTC------ ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ------TTCC TAGCCAATTA CCTC------ ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ------TTCC TAGCCAATTA CCAC------ ---------- owl_monkey ---------- ------TTCC TAGCCAATTA CCTC------ ---------- squirrel_monkey ---------- ------TTCC TAGCCAATTA CCTC------ ---------- marmoset ---------- ------TTCC TAGCCAATTA CCTC------ ---------- galago ---------- ------TTCT TAGCTGATTA CCTC------ ---------- mouse_lemur ---------- ------TTCC TGGATGATTA CCTC------ ---------- lemur ---------- ------TTCC TGGACAATTA CCTC------ ---------- rabbit ---------- ---------- ------ATTG CTTC------ ---------- st_squirrel ---------- ------TTCC CAGCCTATTA CCTC------ ---------- guinea_pig ---------- ------TTCC TAGCAAATTA CTTC------ ---------- rat ---------- ------TTCC TAGCCAATTA CCTC------ ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ------TTCT TATCCAATTA CTTC------ ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ------TTCC TAGCCAATTA CCTC------ ---------- clouded_leopard ---------- ------TTCC TAGCCAATTA CCTC------ ---------- ferret ---------- ------TTCC TAGCCAATTA CCTC------ ---------- dog ---------- ------TTCC TAGCCAATTA CCTC------ ---------- pig ---------- ------TTCC TAGCCAATTA CCTC------ ---------- muntjak_indian ---------- ------TTCC TAGCCAATGA CTTC------ ---------- sheep ---------- ------TTCC TAGCCAATGA CTTC------ ---------- cow ---------- ------TTCC TAGCCAATGA CTTC------ ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ------TTCC AAGCCAATTA CCCC------ ---------- elephant ---------- ------TTCC TAGCCTATTA ATCC------ ---------- tenrec ---------- ------ATCC TAACCTATTA CTCC------ ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ------TTTG AAGCAAATTA TTCCTTTTAT AAAATGAAGG opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -AATAAACTC CAA----TGC TATGATGCCT CACATTTCTA TTT------T chimp -AATAAACTC CAA----TGC TATGATGCCT CACATTTCTA TTT------T gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon -AATAAACTC CAA----TGC TATGATGCCT CACATTTCTA TTT------T colobus_monkey -AATAAACTC CAA----TGC TATGATGCCT CACATTTCTA TTT------C vervet ---------- ---------- ---------- ---------- ---------- baboon -AATAAACTC CAA----TGC TATGATGCCT CACATTTCTA TTT------C macaque ---------- ---------- ---------- ---------- ---------- dusky_titi -AATAAACTC CAA----TGT TATGATGCCT CACACTTCTA TTT------T owl_monkey -AATAAACTC CAA----TGC TATGATGCCT CACACTTCTA TTT------T squirrel_monkey -AATAAACTC CAA----TGC TATGACGCCT CACACTTTTG TTT------T marmoset -AATAAGCTC CAA----TGC TATGATGCCT CACACTTCTA TTT------T galago -AATACACTC CAG----TGC TATTATGTCT CATACTTTT- ---------T mouse_lemur -AATAAACTC CAA----TGC TATAATGTCT CATACTTTTA TTTTATTAAT lemur -AATAAACTC CAA----TGC TATAATGTCT CATACTTTTA TTTTAGTAAT rabbit -AATAAACTC CAA----TGC CATAATGTCT CATACTTTTA TTT------A st_squirrel -AATAAATTC CAA----TGC TATAATGCCT CATACTTTTA TTT------T guinea_pig -AATACAAT- CAA----TGC TATAACATCT CATAGTTTTA TTT------T rat -AG------- -AA----AGC CCCAAAGTAT CACACTTTTG TTT------T mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew -AGTAAACTC AAA----TGA -ACAATGTCT CGTACTTTTA TTT------T rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat -AATAAACTG CAA----TGC TATAAAGTCT CATACTTTTA TTT------T clouded_leopard -AATAAACTG CAA----TGC TATAAAGTCT CATACTTTTA TTT------T ferret -AATAAACTG CAA----TGC TATAATGTCT CGTACTTTTC TAT------T dog -AATAAACTG CAA----TGC TATAATGTCG CATACTTTTA TTT------T pig -AATAAACCT CAA----TGC TATAATGTTT CATAC-TTTA TTT------T muntjak_indian -AATAAACTC CAA----TGC TCTAATGTCT CATGCTTTTA TTT------T sheep -AATAAACTC CAA----AGC TCTAATGTCT CATGCTTTTA TTT------T cow -AATAAACTC CAA----TGC TCTAATGTCT CATGCTTTTA TTT------T horse ---------- ---------- ---------- ---------- ---------- armadillo -CA-AAACCA CAG----TAG CATAGTGTCT CATACTTTTA TTC------C elephant -AACAAATTC CAG----TGC TATAAAGTCT CATACTTTTA TTT------T tenrec -AGCAAACTC CAC----TGC TGTAATGTCT CATACTTTTA TTT------T wallaby ---------- ---------- ---------- ---------- ---------- monodelphis AAAGAAAATG CAAGAGGAGA AATATTATAC AAAACTTTCA TTC------T opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ACAG-TTAA- ATCTGTTTCC AGTTTTCTGT TAGGACATAG Gattttaaat chimp ACAG-TTAA- ATCTGTTTCC AGTTTTCTGT TAGGACATAG Gattttaaat gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ACAG-TTAA- ATCTGTTTCC AGTTTTCTGT TAGGACATAG Gattttaaat colobus_monkey ACAG-TTAA- ATCTGTTTCC ATTTTTCTGT TAGGACATAG Gaatttaaat vervet ---------- ---------- ---------- ---------- ---------- baboon ACAG-TTAA- ATCTGTTTCC AGTTTTCTCT TAGGACATAG Gattttaaat macaque ---------- ---------- ---------- ---------- -attttaaat dusky_titi ACAG-TTAA- ATCTGTTTCC AGTTTTCTAT TAGGACATAG Gattttaaat owl_monkey ACAG-TTAA- ATCTGCTTCC AGTTTTCTGT TAGGACATAG Gattttaaat squirrel_monkey ACAG-TTAA- ATCCGTTTCC AGTTTTCTGT TAGGACATAG Aattttaaat marmoset ACAG-TTAA- ATCTGTTTCC AGTTTTCTGT GAGGACATAG Gattttaaat galago ACAG-TTAA- ATCTCTTTCC AGTTTTCTAT TAGGACACAG Gatttaaaat mouse_lemur ACAG-TTAA- ATCTCTTTGC AG-TTTCTGT TAGGACACAG G--------- lemur ACAG-TTAA- ATCTCTTTCC AG-TTTCTGT TAGGACACAG G--------- rabbit ACAG-TTAG- ACATCTTTCC AGTTTTCTAT TAGGACACAG Gattttaaat st_squirrel ATA------- ---------- ---------- ---------- -agtttaaa- guinea_pig ATG------- ---------- ---------- ---------- -aatttaaat rat ATA------- ---------- ---------- ---------- -gacataaac mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ACAAT---AG ATTTCTTTCC AGATTTCTAT TAGAACACAG G--------- rfbat ---------- ---------- ---------- ---------- -attttaaat cpbat ---------- ---------- ---------- ---------- ---------- cat ACA------- --TTCTTTCC AGTTTTCTGT TAGGACACAG Gattttaaat clouded_leopard ACA------- --TTCTTTCC AGTTTTCTGT TAGGACACAG Gattttaaat ferret ACA------- --TTCTTTCC AGTTTTCTTT TAGGACACAG Gattttaaat dog ACA------- --TTCCTTCC AGTTTTCTGT TAGGACACAG Gattttaaat pig ATA------- --TTCTTTCC AGTTT--TGT TAGAATACAG Catcttaact muntjak_indian ACA------- --TTATTTCC AGTTTTCTAT TAGGACACAG Gattttaagt sheep ACC------- --TTCTTTCC AGTTTTCTAT TAGGACACAG Gattttaagt cow ACA------- --TTCTTTCC AGTTTTCTAT TAGGACACAG Gattttaagt horse ---------- ---------- ---------- ---------- ---------- armadillo ACAACTT-AG AT-GTCCTCC AGGTTTCTGT AAGGGCACAG Gattttaaac elephant ACA------- ---------- ---------- ---------- -atttaacat tenrec ACA------- ---------- ---------- ---------- -attttaaat wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ACA------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ttta------ attaattt-- t--------- aa-----cta attaaaactt chimp ttta------ attaattt-- t--------- aa-----cta attaaaac-- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ttta------ attaattt-- t--------- ag-----cta attaaaactt colobus_monkey ttta------ attaattt-- t--------- ag-----cta attaaaactt vervet ---------- ---------- ---------- ---------- ---------- baboon ttta------ attaattt-- t--------- ag-----cta attaaaactt macaque ttta------ attaattt-- t--------- ag-----cta attaaaactt dusky_titi ttta------ attaattt-- t--------- ag-----cca attaaaac-- owl_monkey ttta------ attaattt-- t--------- ag-----cca attaaaact- squirrel_monkey ttta------ attaattt-- t--------- ag-----cca attaaaact- marmoset ttta------ attaattt-- t--------- ag-----cca attaaaact- galago tttt------ gttcattt-- a--------- at-----cta cttaaaattt mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ttta------ attaatttag t--------- tt-----ttt ---aaaatt- st_squirrel gt-------- attaatta-- t--------- at-----tta ---aatact- guinea_pig tt-------- attacttt-- t--------- ac-----tta ---aatatt- rat gt-------- attaacac-- t--------- at-----gta ---aatata- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat atta------ attaatgt-- ccagtattta aa-----tta attta----- cpbat ---------- ---------- ---------- ---------- ---------- cat ttta------ attaatgt-- t--------- ag-----tta attaa----- clouded_leopard ttta------ attaatgt-- t--------- ag-----tta attaa----- ferret tttc------ atttatgt-- t--------- aa-----tta a--------- dog ttaa------ gtttatgt-- t--------- aa-----tta attcaatgt- pig ttca------ attaattt-- t--------- ag-----ttt atc------- muntjak_indian ttta------ attgattt-- t--------- ag-----tta accca----- sheep ttta------ atggattt-- t--------- ag-----tta accta----- cow ttta------ atggattt-- t--------- ag-----tta accta----- horse ---------- ---------- ---------- ---------- ---------- armadillo ttta------ att----t-- t--------- aa-----tta attta----- elephant tttattttca attaa--t-- t--------- aatgttgtta attaa----- tenrec gtttt----- attaa--t-- t--------- aagaaaatta attaa----- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human aaataaaatt aattaaaatt gaaatTTGGC TGATGTGTCC ATAAGTTTTG chimp aaataaaatt aattaaaatt gaaatTTGGC TGATGTGTCC ATAAGTTTTG gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon aaataaaatt attgaaaatt gaaatTTGGC TGATGTTTCC ATAAGTTTTG colobus_monkey aaataaaatt aattaaaatt gaaaaTTGAC TGATGTTTTC ATAAGTTTTG vervet ---------- ---------- ---------- ---------- ---------- baboon aaataaaatt aattaaaatt gaaatTTGGC TGATGTTTCC ATAAGTTTTG macaque aaataaaatt aattaaaatt gaaatTTGGC TGATGTTTCC ATAAGTTTTG dusky_titi ----aaaatt aattaaaatt gcaatTTGGC TAACGTTTCC ATAAGTTTTG owl_monkey ---taaaatt aagtaaaatt gcaatTTGGC TGATGTTTCC ATAAGTTTTG squirrel_monkey ---taaaatt aattaaaatt gcaatTTGGC TGATGTTTCC ATAAGTTTTG marmoset ---taaaatt aattaaaatg gcaatTTGGC TGCTATTTCC GTAAGTTTTG galago aaataaaaat aattaaactt tacatTTGGT CAACGTT--- AAGAATCTTT mouse_lemur ---------- ---------- -----TTGGC TGATGTTATC ATGAATTTTG lemur ---------- ---------- -----TTGAC TGATGTTATC ATGCATTTTG rabbit --------tg aatta----- -----TTGGC TTATGTTTTC ATGAGTTTTG st_squirrel --------tt aatta----- -----TAGGT TGATGTTTTC AT---TTTTG guinea_pig --------tt aaCTG----- ---------- ---------- ---------- rat --------tt aatta----- -----TTGGC TGATTTTTCC ATGAGTTTTG mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat -------att agttaaaatt taaat----- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat -------att aatta----- ---------- ---------- ---------- clouded_leopard -------att aatta----- ---------- ---------- ---------- ferret -------att aattaacatt -aaat----- ---------- ---------- dog ------aatt aattaacatt taaat----- ---------- ---------- pig ---------t aattaaattt taaat----- ---------- ---------- muntjak_indian -------att aattgaattt taaat----- ---------- ---------- sheep -------att aattaaattt taaat----- ---------- ---------- cow -------att aattaaattt taaat----- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- aatttaaatt taagtTTGGC TGATGTTTCC ATGAGTTTTG elephant ---------- aatttaaatt tgaatTTGGC TAATGTTTCC ATGAG-TTTG tenrec ---------- aattgacaac agact----- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AATAAGGGTC CA-------- ---------- ----AAAT-- --TTATGTTA chimp AATAAGGGTC CA-------- ---------- ----AAAT-- --TTATGTTA gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AATAAGGGTC CA-------- ---------- ----AAAT-- --TTATGTTG colobus_monkey AATAAGGGTC CA-------- ---------- ----AAAT-- --TCATGTTA vervet ---------- ---------- ---------- ---------- ---------- baboon AATAAGGGTC CA-------- ---------- ----AAAT-- --TTATGTTA macaque AATAAGGGTC CA-------- ---------- ----AAAT-- --TTATGTTA dusky_titi AATATGGGTT CA-------- ---------- ----AAAT-- --TTATGTTA owl_monkey AATACG-GTT CA-------- ---------- ----AAAT-- --TTATGTTA squirrel_monkey AATAAGAGTT CA-------- ---------- ----AAAT-- --TTATGTTA marmoset AATACG-GTT CA-------- ---------- ----AAAT-- --TTATGTTA galago AATAATAGCC CC-------- ---------- ----AAAT-- --TTATGTTA mouse_lemur AATAAGAGCC CA-------- ---------- ----AATT-- --TTATGTTA lemur AATACGAGCC CA-------- ---------- ----AATT-- --TTATGTTA rabbit AATGAGGGTC CC-------- ---------- ----GATT-- -----CTATG st_squirrel AATGACA--C AA-------- ---------- ----AATT-- -----TGTTA guinea_pig ---------- ---------- ---------- ---------- ------ACTA rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog AACTA--CTC CC-------- ---------- ----AAAT-- --TTATGTTA shrew AATAA--GCC CCCGATTATA ACATTTGTTT TGTTACAT-- --TTATATTA rfbat AATAA--GCC CA-------- ---------- ----GAAT-- --TTATGTTA cpbat ---------- ---------- ---------- ---------- ---------- cat AATAG--GAC CC-------- ---------- ----AAATGG GCTTATGTCA clouded_leopard AATAG--GAC CC-------- ---------- ----AAATGG GCTTATGTCA ferret AATAA--GCC CA-------- ---------- ----AAAT-- --TTATGTCA dog AATAA--GCC CC-------- ---------- ----AAAT-- --TTAGGTCA pig AATAA--GCC CC-------- ---------- ----AAAT-- --TTACGTTA muntjak_indian AATAA--GCC CA-------- ---------- ----AAAT-- --TTATGTTA sheep AATAA--GCC CA-------- ---------- ----AAAT-- --TTATGTTA cow AATAA--GCC CA-------- ---------- ----AAAT-- --TTATGTTA horse ---------- ---------- ---------- ---------- ---------- armadillo AATAAGGGCC CA-------- ---------- ----AAAT-- --T--TGTTA elephant AATAAGGGCC CA-------- ---------- ----AAAT-- --TTATGTTA tenrec AATAAGGGCC CA-------- ---------- ----GAAT-- --TTATGTTA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAA----CAT TTGTTTGATG CCTTATTTAA ATTGCTTTAC TGGACATTTT chimp CAA----CAT TTGTTTGATG CCTTATTTAA ATTGCTTTAC TGGACATTTT gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon CAA----CAT TTGTTTGATG CCTTATTTAA ATTGTTTTAC TGGACATTTT colobus_monkey CAA----CAT TTGTTTGATG CCTTATTTAA ATTGCTTTAC TGGACATTTT vervet ---------- ---------- ---------- ---------- ---------- baboon CAA----CAT TTGTTTGATG CCTTATTTAA ATTGCTTTAC TGGACATTTT macaque CAA----CAT TTGTTTGATG CCTTATTTAA ATTGCTTTAC TGGACATTTT dusky_titi CAACATTCAT TTGTTTCATG CCTTATTTAA ACTGCTTTAC TGGACATTTT owl_monkey CAACATTCAT TTGTTTGATG CCTTATTTAA ACTGCTTTAC TGGACATTTT squirrel_monkey CAACATTCAT TTGCTTGATG CCTTATTTAA ACTGCTTTAC TGGACATTTT marmoset CAACATTCAT TTGTTTGATG CCTTATTTAA ACTGCTTTAT TGGACATTTA galago TAA----CAT TTATTTGATG CC-TATTTAA ACTGCTTCAC TGGACATTTT mouse_lemur CAA----CAT TTGCGTGATG CCTTATTTTA ACTGCTTTAT TGGACATTTT lemur CAA----CAT TTGCTTGATG CCTTATTTAA ACTGCTTTAT TGGACATTTT rabbit TAA----CAT TTGTTTGATG CCTTATTTAA ACTGCTTTAC TGGACATTTT st_squirrel CAG----TGT TTATTTGATA TCTTATTTAA ACTGCTTTAC TAGACTTTTT guinea_pig TAA----CAT TTGTTTAATC CTTTATTAAA ACTTTTTTAC TAGACATTTT rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TAA----CAT TTGCTTTACG CC----TTAA ACTGTTTTAC TAAACATATT shrew TAA----TAT TTAACCATAG C------TAA ACTTTTTAAC TGAAAATTTT rfbat CAT----CAT TTGTTTGATG CCTTATTTAA ACTGTTTTAC TGGACATTTT cpbat ---------- ---------- ---------- ---------- ---------- cat TGA----CAT TTGTTTGATG TCTTATTTAA ACTGTTTTAT TGGACATTTT clouded_leopard TGA----CAT TTGTTTGATG TCTTATTTAA ACTGTTTTAT TGGACATTTT ferret TGA----CAT TTTTCTGATG CCTTATTTAG ACTGTTTTAT TGGGCATTAT dog TGA----CAT TTGTTTGATG CCTTATTTAA ACTATTTTAT TGGACATTTT pig CAA----CAT TTGTTTGATG CCTTATTTAT ACTATTTCAT TGGACATTTT muntjak_indian CAA----CA- TTGTTTGATG TCTTATTTAA ACTGTTTCAC TGGACATTTT sheep CAA----CA- TCATTTGATT CCTTATTTAA ACTGTTTCAC TGGACATTTT cow CAA----CA- TTGTTTGATG CCTTATTTAA ACTGTTTCAC TGGACATTTT horse ---------- ---------- ---------- ---------- ---------- armadillo CAA----CAT TTGTTTGATG ----ATTTAA A-TGTTTTAA TGGACATTTT elephant C-------AT TTATTTGATG CCTTATTTAA ACTGTCTTAC TGGACATTTT tenrec CCA----CAT TTGTTTGATG CCTAATTTAA ACTATCTTAT TGGGTATTTT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CCATCTGT-T AAGC--TATT TTGGTAATTT CAGTTTTAA- TTCTTAATAG chimp CCATCTGT-T AAGC--TATT TTGGTAATTT CAGTTTTAA- TTCTTAATAG gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon CCATCTGT-T AAGC--TATT TTGGTAATTT CAGTTTTAA- TTCTTAATAG colobus_monkey CCATCTGT-T AAGC--TATT TTGGTAATTT CAGTGTTAA- TTCTTAATAG vervet ---------- ---------- ---------- ---------- ---------- baboon CCATCTGT-T AAGC--TATT TTGGTAATTT CAGTTTTAA- TTCTTAATAG macaque CCATCTGT-T AAGC--TATT TTGGTAATTT CAGTGTTAA- TTCTTAATAG dusky_titi CCATCTGT-T AAGC--TTT- ----CAATTT CAGTTTTAA- TTCTTAATAG owl_monkey CCATCAGT-T AAGC--TTT- ----CAATTT CAGTTTTAA- TTCATAATAG squirrel_monkey CCATCTGT-T AAGT--TTT- ----CAATTT CAGTTTTAA- TTCTTAATAG marmoset CCATCGGT-T AAGC--TTT- ----CAATTT CAGTTTTAA- TTCATAATAG galago ACATCTGT-T AAACTTTATT TTGGTCATTC CATTTTTAG- TTATTAATAG mouse_lemur CCATCTAT-T AAGC--TAGT TTGGTCATTC CATTTATAG- TTATTAATAG lemur CCATCTAT-T AAGC--TATT TTGGTCATTC CATTTTTAG- TTATTAATAG rabbit CCATTTGT-T AAGC--T--- -------TTC CATTTTTGG- TTTTTAATAG st_squirrel CTATCTGT-T AAGC--TATT TTGGTTATTC TATTTTTAG- TAATTAATAG guinea_pig CCATCTGT-T AAGC--TATT TT-----TTC CACTTGTAG- TTAATAACAG rat ---TCTGT-T AAGC--TATT TTGATCATTC CATT------ ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CCATCTGTTA AAGT--CATT T-GGTCATTT TATTCTTAGT TTATTAATAG shrew CCAATTGT-G AAGT--TATT TCTGTCATTC CATT-TTAGT TTATTAATAG rfbat CCATCTGT-T AATC--TATT TTTGTCATTC CATTTTTAGT TTATTAATAG cpbat ---------- ---------- ---------- ---------- ---------- cat CCATCTGG-T AAGC--TATT TTGGTCATTC CATT-TTAGT TTATTAATAG clouded_leopard CCATCTGG-T AAGC--TATT TTGGTCATTC CACT-TTAGT TTATTAATAG ferret CCATCTCT-T AAGC--TATT TTGATCATTC CATTCTTAGT TTATTAATAG dog CCATCTCT-T AAGC--TATC TTGGTCATTC CATTTTTAGT TTATTAATAG pig CCATCTGT-T AAGC--TATT TCGATCATTC CA-TTTTAGT TTATTAATAG muntjak_indian CCATCTGT-T AAGC--TATC TTGGTCATTC CATTTTTAGT TTATTAATAG sheep CCATCTGT-T AAGC--TATC TTGGTCATTT CATTTTTAGT TTATTAATAG cow CCATCTGT-T AAGC--TATC TTGGTCATTC CATTTTTACT TTATTAATAG horse ---------- ---------- ---------- ---------- ---------- armadillo CTGTCTGC-T AAGC--TATT CTGATCATTC CATTTTTACT TTATTAATTG elephant CCATCTGT-T TAGC--TATT TTGGCCATCC CATTTTTAGT TTATTAATAG tenrec CCATCTGT-T TAGC--TATT TTGGTCATTC CATTTTTAGT TTATTAATAG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GATAAAGGAA ACATGCACAT TATAAATCAA TGCTCTGTG- --------TT chimp GATAAAGGAA ACATGCACAT TATAAATCAA TGCCCTGT-- --------TT gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon GATAAAGGAA ACATGCACAT TATAAATCAA TGCTCTGT-- --------TC colobus_monkey GATAAACGAA ACATGCACAT TATAAATCAA TGCTCTGT-- --------TT vervet ---------- ---------- ---------- ---------- ---------- baboon GGTAAAGGAA ACATGCACAT TATAAATCAA TGCTCTGT-- --------TT macaque GATAAAGGAA ACATGCACAT TATAAATCAA TGCTCTGT-- --------TT dusky_titi GATATAGGAA ACATGCACAT TATAAATCAA TGCTCTGT-- --------TT owl_monkey GATAAAGGAA ACATGCGCAT TATAAATCAA TGCTCTGT-- --------TT squirrel_monkey GATAAAGGAA ACATGCATAT TATAAATCAA CACTCTGT-- --------TT marmoset GATAAAGGAA ACATGCACAT TATAAATCAA TGCTCTGT-- --------TT galago GATAAGGGAA ACATGCTCAT TATATATCAC TGTTCCAT-- --------TT mouse_lemur GATAAGGGAA ACATG----- -------CAC CACTCTGT-- --------TT lemur GATAAGGGAA ACATG----- -------CAC CGCTCTGT-- --------TT rabbit GATAAGAAAC ACAGGCGCGT TATAAATCAA TACTCCGT-- --------TT st_squirrel GATATGAAAA ACATGCATAT CATACATCAA TGCTTGGT-- --------TT guinea_pig GATAAGGAAA ATATGCACAT TATAAGTCAT TGTTCTGA-- --------TT rat -------AAC TTGTGT---- --TAAAGCAA TGCTCTGT-- --------TT mouse ---------- ---------- ---------- ---------- ---------- hedgehog GGTAA-GAAA CCATGAACAT TATAAGGCAA TGTTTTGC-- --------TT shrew GCTAAGGAAA ACATCCATGT TATAAATCAA TGCTCTGT-- --------TT rfbat GATGAGGAAA ACATTCACAT TATAAATCAA TGTTCTGT-- --------TT cpbat ---------- ---------- ---------- ---------- ---------- cat GGTAAGGAAA ACATACACAT TATACATCAA TGCTCTGT-- --------TT clouded_leopard GGTAAGGAAA ACATACACAT TATACATCAA TGCTCTGT-- --------TT ferret GATGAGGAAA ACATGCACAT TATAAATCAA TGCTCTGT-- --------CT dog AATGAGGAAA ACATGCACAT TATAAATCAG TGCTCTGT-- --------TT pig AATAAGGAAA GCAGGCACAT TATAAATCAA TGTTCTGT-- --------TT muntjak_indian AATAAGAAAA ACA-TCACAT CATAAATCAC TGCTCTGT-- ---------- sheep AATAAGAAAA ACA-TCACAT CATAAATCAG TGCTCTGT-- ---------- cow AATAAGAAAA ACA-TCACAT CATAAATCAG TGCTCCGT-- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo GATAAGGAAA A-ATACACAT TATAAATCAA TATTCTGT-T GAACAATGTT elephant AATAAGTAAA A-ATGCACAT AGTAAATCAA TGTCCTGT-T GAGCAATGTT tenrec CATATGGGGA A-ATGCACAT GATAAATCAA TGTTCAGT-T GAGCAATGCT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTCC chimp AACAAGCGAA GGTGCGGGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC colobus_monkey AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC vervet ---------- ---------- ---------- ---------- ---------- baboon AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC macaque AACAAGCGAA GGTGCG---- GCGCTCGGTG ATTGGCCTGC CATTGGCTTC dusky_titi AACAATAGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC owl_monkey AACAATCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC squirrel_monkey AACAATAGAA GGTGCGTGCG GCGCTCGGTG ATTGGTCTGC CATTGGCTTC marmoset AACAATAGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC galago ATCAAGCTAA GGTGCGTGCG GCGCTCGGTG ATTGGTCCTC CATTGGCTTC mouse_lemur AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGACTGC CATTGGCTTC lemur AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGACTGC CATTGGCTTC rabbit AACAAGCGAA GGTGCGTGCG GCGCTCGCTG ATTGGCCTGC CATTGGCTTC st_squirrel AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC guinea_pig AACAAGTGAA GGTGCGGG-G GTGCTCGGTG ATTGGCTTGC CATTGGCTTC rat AACAAGCGAA GGTGCGTGCG GCGCGCGCTG ATTGGCCTGC CATTGGCTTC mouse ---------- ---------- ---------- ---------- ---------- hedgehog AACATGCGAA GGTGCGTGCG GCGCGCAGTG ATTGGCCTGC CATTGGCTTC shrew AGTA-GCGAA GGTGCGTGCG GCGCTCGGTG ATTGGTCTGC CATTGGCTTC rfbat AACAAGCTAA GGTGCATGAG GCGCTCGGTG ATTGGTCTGC CATTGGCTTC cpbat ---------- ---------- ---------- ---------- ---------- cat AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC clouded_leopard AACAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC ferret AGCAAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC dog AACAA--gga ggagcg-gcg gcgcccggtg attggccTGC CATTGGCTTC pig AATGAGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC muntjak_indian -----GCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC sheep -----GCGAA GGTGCGTGCG GCGCTCAGTG ATTGGCCTGC CATTGGCTTC cow -----GCGAA GGTGCGTGCG GCGCTCAGTG ATTGGCCTGT CATTGGCTTC horse ---------- ---------- ---------- ---------- ---------- armadillo ----AGCGAA GGTGCGTGCG GCGCTCGGTG ATTGGCCTGC CATTGGCTTC elephant AACAA-CGAA GGTGCGTGCG GCGCTCTGTG ATTGGCCTGC GATTGGCTTC tenrec AACAA-CGAA GGTGCGTGCG GCGGTCCGTG ATTggccTGC CATTGGCTTC wallaby ---------- ---------- ---------- ---------- ---------- monodelphis -----GGGAA GGTATTCGAA GCGCAACCTG ATTGGCCTGC CATTGGCTTC opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTGTTCCTA CTATGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT chimp TTTGTTCCTA CTATGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTTGTTCCTA CTATGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT colobus_monkey TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATATC ACATTCATGT vervet ---------- ---------- ---------- ---------- ---------- baboon TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT macaque TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT dusky_titi TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT owl_monkey TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT squirrel_monkey TTTGTTCCTA TTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT marmoset TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT galago TTTGTTCCTA CTATGACTC- AGAAGAA--A TCCTGATGTC ACATTCATGT mouse_lemur TTTGTTCCTA CTATGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT lemur TTTGTTCCTA CTATGACTC- AGAAGGA--A TGCTGGTGTC ACATTCATGT rabbit TTTGTTCCTA CTGTGACTC- AGAAGGA--A CGCCGATGTC ACAGTCATGT st_squirrel TTTGTTCCTA CTTTGACTCC AAAAAGA--A TGCTGATGTC ACATTCATGT guinea_pig TTTGTTCCT- ---------- ----AGA--A ATCTGATATC ACATTCATGT rat TTTGTTCCTA CTATGACTC- -AAAAGA--A CGCTGACGTC ACATTCGTCT mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTTGTTCCTA CTGTGACTC- AGAAAGAGAA TGCTGATGTC ACATTCATGT shrew TTTGTTCCTA CTGTGACTC- TAAAAAA--A TGCTAGTGTC ATATTCATGT rfbat TTTGTTCCTA CTGTGAGTC- AAACGGA--A TGCTGGTATC ACATTCATGT cpbat ---------- ---------- ---------- ---------- ---------- cat TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT clouded_leopard TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCATGT ferret TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCTGATGTC ACATTCAGGT dog TTTGTTCCTA CTGTGACCC- CGCAGGA--A CGCTGATGTC ACATTCATGT pig TTTGTTCCTA CTGTGACTC- AAAAGGA--A TGTTGATGTC ACATTCATGT muntjak_indian TTTGTTCCT- ----GGCTC- AGAGGGA--A TGCTGATGTC ACATTCATGT sheep TTTGTTCCTA CTGTGACTC- AGAGGGA--A TGCTGATGTC ACATTCATGT cow TTTGTTCCTA CTGTGACTC- AGAGGGA--A TGCTGATGTC ACATTCATGT horse ---------- ---------- ---------- ---------- ---------- armadillo TTTGTTCCTA CTGTGACTC- AGAAGGA--A TGCAGATGTC ACGTTCATGT elephant TTTGTTCCTA CTGTGACTC- ACAAGGA--A TGCTGATGTC ACATTCATGT tenrec TTTGTTCCT- ---------- ---------- ---------- ------AAGT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis TTTGTTTCT- ---------- ---------- ---------- ------ATGT opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GGATTATGA- --TAAATTTT TA----TAAT T-AG-ATTTT GCTATATTTT chimp GGATTATGA- --TAAATTTT TA----TAAT T-AG-ATTTT GCTATATTTT gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon GGATTATGA- --TAAATTTT TA----TAAT T-AG-ATTTT GCTATATTTT colobus_monkey GGATTATGA- --TAAATTTT TA----TAAT T-AG-ATTTT GCTATATTTT vervet ---------- ---------- ---------- ---------- ---------- baboon GGATTATGA- --TAAATTTT TA----TAAT T-AG-ATTTT GCTATATTTT macaque GGATTATGA- --TAAATTTT TA----TAAT T-AG-ATTTT GCTATATTTT dusky_titi GGGTTATGA- --TAAATTTT TA----TAAT T-AG-ACTTC ACTATGTTTT owl_monkey GGGTTATGA- --TAAATTTT TA----TAAT T-AG-ACTTC ACTATGTTTT squirrel_monkey GGGTTATGA- --TAAATTTT TA----TAAT T-AG-ACTTC ACTATTTTTT marmoset GGGTTATGA- --TAAATTTT TA----TAAT T-AG-ACTTC ACTATGTTTT galago GGATTATGA- --TGAAGTTT TA----TAAT T-AC-ATTTT GCTCTATTTT mouse_lemur GGGTTATGA- --TAAATTTT TA----CAAT T-AG-GTTTT GCTATATTTT lemur GGGTTATGA- --TAAATTTT TA----TTAT T-AG-ATTTT GCTATATTTT rabbit GAGTTATAA- --TAAA-TTT TA----TTAT T-AG-ATTTT GCTGTATTTT st_squirrel GACTTATAA- --TTA-TTTT TT----GGAT T-AG-AGTTT GCTATATTTT guinea_pig AGGTTATGA- --TAAATTTT CA----TAAT T-AC-AATTT GCTATATTTT rat TGTTTATAA- --TGAA-TTT CA----TAAT T-GCTGTTTT TCTGTATTTT mouse ---------- ---------- ---------- ---------- ---------- hedgehog GAGTTATGA- --TAAATTTT TA----TAAT T-AT-ATCAT GCTATATTTT shrew GGATTGTGA- --TTTATTTT TA----TGGT T-AT-GTGA- -----ATTCT rfbat AGATTATGA- --TAAAATTT TA----TAAT T-AG-ATTTT GCTATATTTT cpbat ---------- ---------- ---------- ---------- ---------- cat GGATTATGA- --TAAATTTT TA----TAAT T-AG-ATTTT GCTATATTTT clouded_leopard GGATTATGA- --TAAATTTT TA----TAAT T-AG-ATTTT GCTATATTTT ferret GGATTATGAT TTTTAATTTT TA----TAAT T-AA-ATTTT GCTATATTTT dog GGATTATGAT TTTTAATTTT TA----TAGT T-AG-ATTTT GCTAGATTTT pig GTATTATGA- --TAAATTTT TA----TAAT A-AG-ATTTT GCTATATTTT muntjak_indian GGATTATCA- --TAAATTTT TA----TAAT T-AG-ATTTT ACTATATTG- sheep GGATTATCA- --TAAATTTT TA----TAAC T-AG-ATTTT ACTATATTGT cow GGATTATCG- --TAAATTTT TA----TAAC T-AG-ATTTT ACTATATTGT horse ---------- ---------- ---------- ---------- ---------- armadillo GGGTTATGA- --TAAATTTT TA----TAAT GAAG--TTTT ACAGTATTTT elephant GGGTTATGA- --TGAATTTT TA----TAAT TTAG-ATTTT GCTCTATTTT tenrec GGGGTAGTA- --TCAATTTT CA----TAAT TTAG-ATTTT GTTATATTTT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis AGACTATGA- ---AAATATT TGGTTCTACT G-GA-ATTCT GTTACATCAT opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -GTTTTGTTT GAAGA-AAGC GAG-CTGTTG -CTAGGATGT GGGAGCTAGT chimp -GTTTTGTTT GAAGT-AAGC GAG-CTGTTG -CTAGGATGT GGGAGCTAGT gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon -GTTTTGTTT GAAGT-AAGC AAG-CTGTTG -CTAGGATGT GGAAGCTAGT colobus_monkey -GTTTTGTTT GAAGT-AAGC GAG-CTGTTG -CTAGGATGT GAGAGCTGGT vervet ---------- ---------- ---------- ---------- ---------- baboon -GTTTTGTTT GAAGT-AAGC GAG-CTGTTG -CTAGGATGT GAGAGCTGGT macaque -GTTTTGTTT GAAGT-AAGC GAG-CTGTTG -CTAGGATGT GAGAGCTGGT dusky_titi -GTTTTGTTT GAAGT-AAGC AAG-CTGTTG -CTAGGATGT GGGAGCTAGT owl_monkey -GTTTTGTTT GAAGT-AAGC AAG-CTGTTG -CTAGGATGT GGGAGCTAGT squirrel_monkey -GTTTTGTTT GAAGT-AAGT AAG-CTGTTG -CTAGGATGT GGGAGCTAGT marmoset -GTTTTGTTT GAAGT-AAGC AAG-CTGTTG -CTAGGATGT GGGAGCTAGT galago -GTTTTGTTT GAAGT-AAGC AAG-CTGTTG -CTAGGATGT TGGAGCTAGT mouse_lemur -GTTTTGTTT GAAGTTAAGT GAT-TTGTTG -CTAGGATAT GGGAGCTACT lemur -GTTTTGTTT GAAGT-AAGT GAC-CTGTTG -CTAGGATAT GGGAGCTAGT rabbit -GTTTTGTTT GACTT-GAGT GAG-CTGTTG -CTAGGATGT GGGAGATAGT st_squirrel -GT-----TT GAAAT-AAGT GAG-CTGTTG -CTAGGATGT G--AGCTAGT guinea_pig -GTTTTG-TT AAAGT-AAGT GAG-CTGTTG -CTAGGATGT GGGGGAGAGT rat -GTTTTGTTT GAAGT-AAGT GAG-CTGTTG -CTAGGATGT GGAAGCTAGT mouse ---------- ---------- ---------- ---------- ---------- hedgehog -GTTCTGTTT GAAGT-AAGC AAT-TTTTTT TCTAAGGAAT GGGAGCTAGT shrew -GTTCTATTT GAAGT-GAGC AGG-CTAATG -CTAGGATAT GGGAGCTAGT rfbat -GTTTTGTTT GAAGT-AAGA GAG-CTGTTG -CTAGGATGT GGTAGCTAGT cpbat ---------- ---------- ---------- ---------- ---------- cat -GTTTTGTTT GAAGC-AGGC GAG-CTGTTG -CTAGGATGT A-GAGCTAGT clouded_leopard -GCTTTGTTT GAAGC-AGGC GAG-CTGTTG -CTAGGATGT A-GAGCTAGT ferret -GTTTTGTTT GAAGC-AAGT GAG-CTGTTG -CTAGGATGT G-AAGCTAGT dog -GTTTTGTTT GAAGC-AAGT GAG-CGGTTG -CTAGGATGT G-AAGCTAGT pig -GTTTTGTTT GAGGT-AAGT GAG-CTGTTG -CTAGGCTGT GGGAGCTAGT muntjak_indian -----TGTTT GAGAG-AAGT GAG-CTATTG -CTAGGATGT GAGAGCTAGT sheep -ATTTTGTTT GAGAT-AAGT GAG-CTGTTG -CTAGGAAGT AAGAGCTAGT cow -ATTTTGTTT GAGAT-AAGT GAG-CTGTTG -CTAGGAAGT GAGAGCTAGT horse ---------- ---------- ---------- ---------- ---------- armadillo -GTTTTATTT GAAGT-GAG- ----CTGTTG -CTAGGATAT GGGAGATAGT elephant TGTTTTGTTT GAAGT-AAGC AAG-CTGTTG -CAAGGAGGT GGGAGATAGT tenrec GGTTTGGTTT GAAGT-AAGC AAAACTGTTG -CTAGGAGTT GTGAGATAGT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis -G-------- ------AATC ATG-TTTAAG -ATTAGATTT G-GAGAAATG opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTGGTT--AT A--CAAAG-- -----TTTTT GTT------- ---------- chimp TTGGTT--AT A--CAAAG-- -----TTTTT GTT------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTGGTT--AT A--CAAAG-- -----TTTTT GTT------- ---------- colobus_monkey TTGGTT--AT A--CAAAG-- -----TTTTT GTT------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon TTGGTT--AT A--CAAAG-- -----TTTTT GTT------- ---------- macaque TTGGTT--AT A--CAGAG-- -----TTTTT GTT------- ---------- dusky_titi TTGGTT--AT A--AAAAG-- -----TTTTT GTT------- ---------- owl_monkey TTGGTT--AT A--CAAAG-- ------TTTT GTT------- ---------- squirrel_monkey TTGGTT--AT G--CAAAG-- -----TTTTT GTT------- ---------- marmoset TTGGTT--AT A--CAAAG-- -----TTTTT GTT------- ---------- galago TTGATT--AT A--CAGAG-- -----TTTTT GTT------- ---------- mouse_lemur TTGATT--AT A--CAGAG-- -----TTTTT GTT------- ---------- lemur TTGATT--AT A--CAGAG-- -----TTTTT GTT------- ---------- rabbit TTGGTT--TT A--CAGAG-- -----TTTCT GTT------- ---------- st_squirrel TTGGTTTGAT A--CAGAGtt tttttttttt ttt------- ---------- guinea_pig TTGGTT--AT A--CAAGA-- ----GTTTTT GCT------- ---------- rat TTCTCT--AC A--CAGAG-- ------TTTT GTT------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TCAGTT--AA C----AGA-- -TGACTTTTT GTT------- ---------- shrew GTGGTG--AG C--TAGGG-- -TTGCTTTTG TTTGCTTTCG AAATTTTATT rfbat TTGGTT--AT A--CAGAG-- -----TTTTT GTT------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat TTGGTT--GT A--CAGAG-- -----TTTTT GTT------- ---------- clouded_leopard TTGGTT--GT A--CAGAG-- -----TTTTT GTT------- ---------- ferret TTGGTT--AT A--CAGAG-- -----TTTTT GTT------- ---------- dog TTGGTT--AT A--CAGAG-- -----TTTTT GTT------- ---------- pig TCGTTT--AT A--CAGAG-- -----TTTTT GTT------- ---------- muntjak_indian TTGGTT--AT A--CAGAG-- -----CTTTT GTT------- ---------- sheep TTGGTT--AT A--CAGAG-- ------TTTT GTT------- ---------- cow TTGGTT--AT A--CAGAG-- ------TTTT GTT------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo TTGGTT--A- ---CAGAG-- -----T-TTT GTT------- ---------- elephant TTGGTT--AT A--CAGAG-- -----TTTTT GTT------- ---------- tenrec TTGGTT--AT ATACAGAG-- -----TCTTT ATT------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis CCTATT--AT A--CAAAG-- ---ATTTTTC ATC------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human --------TT AATAATACTT TAGAACAGAA -TTGA-TTTC TGCTTG---- chimp --------TT AATAATACTT TAGAACAGAA -TTGA-TTTC TGCTTG---- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon --------TT AATAATACTT TAGAACAGAA TTTGA-TTTC TGCTTG---- colobus_monkey --------TT AATAATACTT TAGAGCAGAA TTTGA-TTTC TGCTTG---- vervet ---------- ---------- ---------- ---------- ---------- baboon --------TT AATAATATTT TAGAACAGAA TTTGA-TTTC TGCTTG---- macaque --------TT AATAATACTT TAGAACAGAA TTTGA-TTTC TGCTTG---- dusky_titi --------TT AATAATACTT TAGAACAGAA TTTGA-TTTC TGCTTG---- owl_monkey --------TT AAT-ATACTT TAGAATAGAA TTTGA-TTTC TGCTTG---- squirrel_monkey --------TT AAT-ATACTT TAGAACAGAA TTTGA-TTTC TGCTTG---- marmoset --------TT AAT-ATACTT TAGAACAGAA TTTGA-TTTC TGCTTG---- galago --------TT AATAATAATT TAGAACAGAA CTTGACTTTC TGCTTG---- mouse_lemur --------TT AATAATAATT TAGAACAGAA TTTGACTTTC TGCTTG---- lemur --------TT AATAACATTT TAGAACAGAA TTTGACCTTC TGCTTG---- rabbit --------TT AATAATATTT TAGAACAGAA TTTGACTTTC TGCTTG---- st_squirrel --------tt agtaata-tt taGAACAGAA TTTGAC-TTC TGCTTGGGAA guinea_pig --------TT GGTCATATTT TAGAACAGAA TTTGACTTTC TGTTTG---- rat --------TC AACAATATTT TAGGGAAGAA TTTGACTTTC TGATTG---- mouse ---------- ---------- ---------- ---------- ---------- hedgehog --------TC AATAATATTT TAAAGTAGAA TTTTACTTTC TGCTTG---- shrew TTTAAATCTT AACTATCGTT TATAGTAGAA TTTGATTTTC TGCCTG---- rfbat --------TT AATAATATTT TAGACTAGAA TTTGACTTTC TGCTTG---- cpbat ---------- ---------- ---------- ---------- ---------- cat --------TT AATAATATTT TAGAGTAGAA TTTGACTTTC TGCTTG---- clouded_leopard --------TT AATAATATTT TGGAGTAGAA TTTGACTTTC TGCTTG---- ferret --------TT AATA---TTT TAGAGTGGAA TGTGACTTTC TGCTTG---- dog --------TT AATAATATTT TAGAGTGGAA TTTGACTTTC TGCTTG---- pig --------TT AATAATATTT TACAGTAGAA CATGACTTTC TGTTTG---- muntjak_indian --------TT AATAATATTT TAGAGTAGAA TTTGACTTTC TGCTTG---- sheep --------TT AATA---TTT TAGAGTAGAA TTTGAGTTTC TGCTTG---- cow --------TT AATAATATTT TAGAGTAGAA TTTGATTTTC TGCTTG---- horse ---------- ---------- ---------- ---------- ---------- armadillo --------TT AATTTTATTT TAGAGTAGAA TTTGTCTTTC TGCTTA---- elephant --------TT AACAATATTT TAGAACAGAG TTTGACTTTA TGCTTG---- tenrec --------TT AACAATATTT TAGAGCAGAA TTTGACTTTT TGCTTG---- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis --------AT GATGATATCT CATAGTAGAA TTTAATCTTC TAATTG---- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- -G-G----AA AA-A------ ---C--AGTG GACTTT-GAG chimp ---------- -G-G----AA AA-A------ ---C--AGTG GACTTT-GAG gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- -G-G----AA AA-A------ ---C--AGTG GACTTT-GAG colobus_monkey ---------- -G-G----AA AA-A------ ---C--AGTG GACTTT-GAG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- -G-G----AA AA-A------ ---C--AGTG GACTTT-GAG macaque ---------- -G-G----AA AA-A------ ---C--AGTG GACTTT-GAG dusky_titi ---------- -G-A----AA AA-A------ ---C--CGTG GACTTT-GAG owl_monkey ---------- -G-G----AA AA-A------ ---C--CGTG GACTTT-GAG squirrel_monkey ---------- -G-G----AA AA-A------ ---C--TGTG GACTTC-GAG marmoset ---------- -G-G----AA AA-A------ ---C--CGTG GACTTT-GAA galago ---------- -G-A----AA AA-A------ ---C--AATG GTCTTT-GAG mouse_lemur ---------- -GAA----AA AA-A------ ---C--AATG GCCTTTAGAG lemur ---------- -GAA----AA AA-A------ ---C--AATG GCCTTTAGGG rabbit ---------- -G-G----AA AA-A------ ---C--AATG GGCTTT-GAG st_squirrel AAAGAAGAAA AA-A----AA AA-A------ ---C--AATG GCTTTT-GAA guinea_pig ---------- -A-A----AA AA-A------ ---A--AATG GCCTTT-AAG rat ---------- -C-A----GA AA-T------ ---A--AACA CTGACT-GAG mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- -G-AA---AA AA-A------ ---C--AATG GCTTTT-GAG shrew ---------- -G-AAGTGAA AA-A------ ---CTTAAAC GATTTT-GAG rfbat ---------- -G-AA---AA AA-A------ ---C--AATG GCCTTT-GAG cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- -G-A----AA AA-A------ ---C--AATG GCCTTT-GAG clouded_leopard ---------- -G-A----AA AA-A------ ---C--AATG GCCTTT-GAG ferret ---------- -G-A----AA AA-A------ ---C--AATG GCCTTT-CAA dog ---------- -G-A----AA AA-A------ --AC--AATG GCCTTT-GAG pig ---------- -G-A----AA AA-A------ ---C--AATG GCCTTT-GAG muntjak_indian ---------- -G-A----AA AA-G------ ---C--AATG ACCTTT-GAG sheep ---------- -G-A----AA AC-A------ ---C--AATG ACCTTT-GAG cow ---------- -G-A----AA AA-A------ ---C--AATG ACCTTT-GAG horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- -G-A----AA AAAA------ ---C--AATG GCCTTT-GAG elephant ---------- -G-A----AA AA-A------ ---T--AATG GCCTTT-GAG tenrec ---------- -G-A----AA AA-------- ---C--AATG GCCTAG-GAA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- -G-G----AA AA-AACAATA AAAC--AATA GCACCT-TCA opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAGCAGAAAC --AG--TCTC ATTTT-GCGG TGAATGGTAA AT-CATGGCC chimp AAGCAGAAAC --AG--TCTC ATTTT-GCGG TGAATGGTAA AT-CATGGCC gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAGCAGAAAC --AG--TCTC ATTTT-GTGG TGAATGGTAA AT-CATGGCC colobus_monkey AAGAAGAAAC --AG-TTCTC ATTTT-GCGG TAAATGGTAA AT-CATGGCC vervet ---------- ---------- ---------- ---------- ---------- baboon AAGGAGAAAC --AG--TCTC ATTTT-GCGA TAAATGGTAA AT-CATGGCC macaque AAAGAGAAAC --AG--TCTC ATTTT-GCGG TAAATGGTAA AT-CATGGCC dusky_titi AAGCAGAAAC --AG--TCTC CTGTT----G TGAATGGCAA AT-CATGGCT owl_monkey AAGCAGAAAC --AG--TCTC CTTTT-GCAG TGAATGGCAA AT-CATGGCT squirrel_monkey AAGCAGAAAC --AG--TCTC CTTTT-GCAG TGAATGGCAA AT-CATGGCT marmoset AAGCAGAAAC --AG--TCTC CTTTT-GCAG TGAATGGCAA AT-CATGGCT galago AAGCAGAAAC GGAG--TCTC ATTTT-GTGG TGAATGGTAA AT-CATGGCA mouse_lemur AAACAGAAAC AGAG--TCTC ATTTT-GTGG TGAATGGTAA AT-CCTGGCC lemur AAGCAGAAAC AGAG--TCTC ATTTT-GTGG TGAATGGTAA AT-CCTGGCC rabbit AGGCAGAAAC --AGAGTCTC ATTTT-GTGG TGAATGGTAA GT-CCTGGCC st_squirrel AAGCAGAAAC --AGTATCTC ATTTT-GTGG TGAATGGTAA AT-TATGGCC guinea_pig AAACAGA--- -----CTCTC CTTTT-GTGG TGAATGGTAA ATCCGTGGCT rat AGGTAGAAAC --AG-CCTCA TTTTT-GTGG TGAATGGGAA AT-CATGGCC mouse ---------- ---------- ---------- ---------- ---------- hedgehog AAGCAGACAC AGAG--TCTC ATTTTTATAG TGAATGGTAA AT-CATGGCC shrew AAGCAGAAA- -GTG--TCTC ATTTT-ACTG TAAATGATAA GT-TATGGCC rfbat AAACAGAAAC AGAA--TCTC ATTTT-GTGG TGAATGGTAA AT-CATGGCC cpbat ---------- ---------- ---------- ---------- ---------- cat AAGCAGAAAC AGAG--TCTC ATTTT-GTGG TGAATGGTAA AT-CATGGCC clouded_leopard AAGCAGAAAC AGAG--TCTC ATTTT-GTGG TGAATGGTAA AT-CATGGCC ferret AAGCAGAAAC AGAG--TCTC ATTTT-GTGG TGAATGGTAA AT-CATGGCC dog AAGCAGAAAC AGAG--TCTC GTTTT-GTGG TGAATGGTAA AT-CATGGCC pig AAGCAGAAAC AGAG--TCTC ATTTT-GTGG TGAATGGTAA AT-CATGGCC muntjak_indian ATACAGAAAC AGAG--TCTC ATTTT-GTGG TGAATGCTAA AT-CATGGCC sheep AAACAGAGAC AGAG--TCTC ATTTT-GTGA TGAATGCTAA AT-CATGGCC cow AAACAGAAAC AGAG--TCTC ATTTT-ATGG TGAATGCTAA AT-CATGGCC horse ---------- ---------- ---------- ---------- ---------- armadillo AAGCAGAAAC AGTG--TCTC ATTTT-GTGG TGAATGGTAC AT-TATGGCC elephant AAGCA---A- ACAG--TCAC ACTTT-GTGG TGAATGGTAA GT-CATGGCC tenrec AAGCAGAAA- AGAG--TCAC ATTTT-GTGG TGAATGGTGA GC-CATGGCC wallaby ---------- ---------- ---------- ---------- ---------- monodelphis AATCAAAACC AGAG--CTTC ATTTT-GTGG TGAATAGAAA AT-TGTGGCC opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTGGAAA chimp AACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTGGAAA gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTAGAAA colobus_monkey AACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTGGAAA vervet ---------- ---------- ---------- ---------- ---------- baboon AACAGCCAGC TGTTTTCCTC TTT-CCTTTA TGATTTCC-- --ATTGGAAA macaque AACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTGGAAA dusky_titi AACAGCCAGC TCTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTAAAAA owl_monkey AACAGCCAGC TGTTTTTCTC TTT-CCTTTA TTATTTCC-- --ATTAGAAA squirrel_monkey AACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --GTTAGAAA marmoset AACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTAGAAA galago CACAGCCAGC TGTT---CTC TTT-CCTTTA TTATTTCT-- --GTTAAAAA mouse_lemur CACGGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTAAAAA lemur CACAGCCAGC TGTTTTCCTC TTT-CTGTTA TTATTTCC-- --ATTAAAAA rabbit CTCGGCCAGC TGTTTTCCTC TTT-CCTTTA TCATTTCC-- --ATTAGAAA st_squirrel CACAGCCAGC TGTTTTCCTC TTT-CCTTTA GTCTTTCT-- --ATTAGAAA guinea_pig CACAGCCAGC TGTTTCCCCC TTT-CCTTTA TTATTTCC-- --ATGAGAAA rat CATCAACAGC TGCTTTCTC- --------TA TTGTTGCACT GGATAGAGAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog CACAGCCAGC TGTTTTCCTC TTT-CCATT- TTATTTCT-- --GTTAGATA shrew CACAGCCAGC TGTTCTCCCC TTT-CCTTTA CGATTTCT-- --ATTAGAAA rfbat CACAGCCAGC TGTTTTCCTC TTT-GCTTTA TTATTTCT-- --GTTAGAAA cpbat ---------- ---------- ---------- ---------- ---------- cat CAGAGCCAGC TGTTTTCCTC TTT-CTTTGA TTATTTCC-- --ATTAGGAA clouded_leopard CAGAGCCAGC TGTTTTCCTC TTT-CTTTGA TTATTTCC-- --ATTAGGAA ferret CACAGCCAGC TGTTTTCCTC TTT-CCTTTA TCATTTCC-- --ATTAGGAA dog CACAGCCAGC TGTTTTCCTC TTTTCCTTTA TTATTTCC-- --ATTAGGAA pig CAGAGCCAAC AGTTTTCCTC TTT-CCTTTG ATATTTCC-- --ATTAGAAA muntjak_indian CACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTAAAAA sheep CACAGCCAGC TATTTTCCTC TTT-CCTTTA CTGTCTCC-- --GTTAGAAA cow CACAGCCAGA TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATTAGAAA horse ---------- ---------- ---------- ---------- ---------- armadillo CACAGCCAGC TGTTTTCCTC TTT-CCTTTA TTATTTCC-- --ATCAGAAA elephant CACAGCCAGC TGCTTTGCTC TTT-CCTTTA TTATTTCC-- --ATGAGAAA tenrec CACAGCCAGT CACTTTCCTC TCT-CCTTTT TTGTTTCC-- --ATGAGAAA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis CATGTCCAAC TGCTTTCCTC TTT-TCCAT- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTAGAATGAA TA----TTAT TAATTATGAA AT-------- -------CAA chimp TTAGAATGAA TA----TTAT TAATTATGAA AT-------- -------CAA gorilla ---------A TA----TTAT TAATTATGAA AT-------- -------CAA orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTAGAGTGAA TA----TTAT TAATTATGAA AT-------- -------CAA colobus_monkey TTAGAATGAA TA----TTAT TAATTATGAA AT-------- -------CAA vervet ---------- ---------- ---------- ---------- ---------- baboon TTAGAATGAA TA----TTAT TAATTATGAA AT-------- -------CAA macaque TTAGAATGAA TA----TTAT TAATTATGAA AT-------- -------CAA dusky_titi TTAGAATGAA T--------- --ATTATGAA AA-------- -------CAA owl_monkey TTAGAATAAA T--------- --ATTATGAA AA-------- -------CAA squirrel_monkey TTAGAATGAC T--------- --ATTATGAA AA-------- -------CAA marmoset TTAGAATGAA T--------- --ATTATGAA AA-------- -------CAA galago TTAGAATGA- ---------T TAAATATGAA AT-------- -------AAA mouse_lemur TTAGAATGAA TATAATTTAT GAATTGTGAA AT-------- -------AAA lemur TTAGAATGAA TATAAGTTAT GAATTATGAA AT-------- -------AAA rabbit TAAGAATGAC TAT-AATTAC GAATTGTGAA AT-------- -------CAA st_squirrel TTAGAATGAG TATGAGTTAT GATTTACAAA AT-------- -------AAA guinea_pig TTAGA----A TATATATTAT GG-------- ---------- ---------- rat TGAGC----A TATGAATTGT GA-------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTAGAATGAA TGTAATGTAT GAATTATGAA AT-------- ---------- shrew TTAGAATGAA CATGAACTAC AAATTTTGCA GT-------- -------CAA rfbat TTAGAATGAA TGTAAATTAT GAATTATGAA AT-------- ------AGAC cpbat ---------- ---------- ---------- ---------- ---------- cat TTAGAATGA- ---------- ---------- ---------- ---------- clouded_leopard TTAGAATGA- ---------- ---------- ---------- ---------- ferret TTACAACGA- ---------- ---------- ---------- ---------- dog TCAGAATGA- ---------- ---------- ---------- ---------- pig TTATAATGA- ---------- ---------- ---------- ---------- muntjak_indian TTAGAATGA- ---------- ---------- ---------- ---------- sheep TTAGAATGA- ---------- ---------- ---------- ---------- cow TTAGAATGA- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo TTAGAATGAT AATAAATTAT GAATTATGAA AT-------- -------CAA elephant TTAGAGTGAC CATAAATTAT GAGCTATGAA AT-------- -------CAG tenrec TGAGAGTGA- -ATAAAATGT GAATTATGAA GT-------- -------CTG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- -----ATGGT GAATTATGTA ATTTCTGAAG AATAGCTCTA opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA chimp CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA gorilla CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA orangutan ---------- ---------- ---------- ---------- ---------- gibbon CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA colobus_monkey CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA vervet ---------- ---------- ---------- ---------- ---------- baboon CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA macaque CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA dusky_titi CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ACAATTTTCA owl_monkey CTTTTTCA-- ---G--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA squirrel_monkey CTTTTTCA-- ---G--CTTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA marmoset CTTTTTCA-- ---A--ATTT TCAGGATTTT -AAAGAAAA- ATAATTTTCA galago CTTTCTTA-- ---G--ATTT TCAAGATTTT -AAAGAAAA- ATAAT----- mouse_lemur CTTTTTTA-- ---G--ATTT TCATGATTTT -AAAGATAA- ATAATATTCA lemur CTTTTTTA-- ---G--ATTT TCATGATTTT -AAAGAAAA- ATAATATTCA rabbit CTTTttCA-- ---AAGATTT TCAAGATTTT -AAAGAAAA- ATAA-TTTCA st_squirrel CTTTCTCA-- ---T--ATTT TCAAGAATTT -AAAAAATA- ATTT-TTTCA guinea_pig -CTTTTCT-- ---C--ATAC TTAAGATTTT -AGAGACAA- ATTG-----A rat -----TAA-- ---C--CTTT CCAAGATTTT -AAAGAAAA- ACAG-TTTCA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ------CAGA ------ATTT TCAGAATTT- -AAGGAAAA- ATAA------ shrew CTTTTG---- ---------- ---------- ---------- -----TTTTA rfbat TTTTTCCCTA ---G--ATTT TCAAAATTT- -TAGGGAAA- GTAATtttca cpbat ---------- ---------- ---------- ---------- ---------- cat ------CATA ---C--ATTT TCAAGATTT- -AAGGTG--- -----ttcca clouded_leopard ------CATA ---C--ATTT TCAAGATTT- -AAGGTG--- -----ttcca ferret ------CATA ---G--ATTT TCAGGATTTT TAAGGAAAA- ATAACTTTCA dog ------CATG ---G--ATTT TTAAGATTTT -ATGGAAAA- ATAATtttca pig ------CATG ---G--ATTT TCAAGATTTT -AAGGAAAA- ATAAT----- muntjak_indian ------CA-- ---C--ATTT TCAAGATTTT -AAGGAAAAA TTAAT----- sheep ------CA-- ---A--ACTT TCAAGATTTT -AAGGAAAA- TTAAT----- cow ------CA-- ---A--ATTT TCAAGATTTT -AAGGAAAAA TTAAT----- horse ---------- ---------- ---------- ---------- ---------- armadillo CTTTTTCAGA ATAG--AAGT TCAAGATTTT -AAAGAAAA- ATAATTTTCA elephant CTTTTTCATA GTAG--ATTT TCAAGATGTT -AAAG-AAA- ATAGT----- tenrec CTTTTTTGTA ATAC--ATTT TCAAGATATT -AAAG-AAA- CACAC----- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis CTCTTAAGAA ---T--ATTT TC----CTTT -AAAGAACA- AAAA------ opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TT-AGGC--- AAAGAACGT- -TTTG--GAA TCAGGTT--- TTTAAAGTC- chimp TT-AGGC--- AAAGAACGT- -TTTG--GAA TCAGGTT--- TTTAAAGTC- gorilla TT-AGGC--- AAAGAATGT- -TTCG--GAA TCAGGTT--- TTTAAAGTC- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TT-AGGC--- AAAGAACCT- -TTTG--GAA TCAGGTT--- TTTCAGGTC- colobus_monkey TT-AGGC--- GAAGAACCT- -TTTG--GAA TCAGGTT--- TTTAAAGTC- vervet ---------- ---------- ---------- ---------- ---------- baboon TT-AGGC--- AAAGAACCT- -TTTG--GAA TCAGGTT--- TTCAAAGTC- macaque TT-AGGC--- AAAGAACCT- -TTTG--GAA TCAGGTT--- TTCAAAGTC- dusky_titi TT-AGGC--- AAAGAACCT- -TTTG--GAA TCAGGTT--- TTTCAAGTC- owl_monkey TT-AGGC--- AAAGAACCT- -TTTG--GAA TCAGGTT--- TTTCAAGTC- squirrel_monkey TT-AGGCAAA AAAAAACCT- -TTTG--GAA TCAGGTT--- TTTCAAGTC- marmoset TT-AGGC--- AAAGAACCT- -TTTG--GAA TCAGGTT--- TTTCAAGTC- galago ---------- ------CC-- -TTTG--GAA TCAGGTT--- TTTAAATTC- mouse_lemur TT-AGGC--- AAAGAACCT- -TTTG--GAA TCTAGTT--- TTTAGAATC- lemur TT-AGGC--- AAAAAACCT- -TTTG--GAA TCTGGTT--- CTTAGAATC- rabbit CA-AGGC--- AAAAAACCT- --TTG--GAG TCAGAGT--- TTAAGAATT- st_squirrel TT-AGGT--- AAAGAA---- --TTA--GAA TCAGGTT--- TTCAAAATC- guinea_pig TT-AGGC--- AAAGAACCT- -TTAG--TAG TCAGATT--- TTTACATTT- rat TT-AGGC--- AAAGAACCT- -TTTG--GAC TCAG------ -----GTTC- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ------ACT- -GTCA--GCA TCAGGTT--- TTAAATATC- shrew TT-AAGC--- AAAGAAACC- --TCATGGCA TAAGGTT--- TT-----TT- rfbat tt-aggc--- aaagaaTCT- --TTG--GAA TCAGGTT--- TTTAAAATC- cpbat ---------- ---------- ---------- ---------- ---------- cat tt-aggc--- aaagaaCCT- -TTTG--GAC TCAGATT--- TTTAAAATC- clouded_leopard tt-aggc--- aaagaaCCT- -TTTG--GAC TCAGATT--- TTTAAAATG- ferret TT-AGGC--- AAAGAACCT- -TTTG--GAA TCAGGTT--- TTAAAAATC- dog tt-aggc--- aaagaaCCT- -TTTG--GAA TCAGGTT--- TTAAAAATC- pig ---------- ------CCT- -TTTG--GAA TCAAGTT--- TTAAAAATC- muntjak_indian -T-AGGC--- AAAGAACAT- -TTTG--GAA TCACATT--- TTTAAAATC- sheep -T-AGAC--- AAAGAACCT- -TTTG--GAA TCACATT--- TTAAAAATAA cow -T-AGGC--- AAAGAACCT- -TTTG--GAA TCACATT--- TTAAAAATA- horse ---------- ---------- ---------- ---------- ---------- armadillo TTAAGGC--- AAAGAACCT- -TTTG--GAA TCAAGTT--- TTTAAAACC- elephant ---------- ------CCT- -TTTG--GAA TCGGGTT--- TTTAAAATC- tenrec ---------- -AAGGGCCT- -TTTG--GAA TTAGGTT--- TTTAAAATC- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ------CCTG GCCTG--TGA TCTAATTATC TTTCCAGGA- opossum ---------- ------CCTG GCTTG--TGA CCTAATTAAC TTTCCAGGA- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CCTTTTATAG CAAATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCT chimp CCTTTTATAG CAAATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCT gorilla CCTTTTATAG CAAATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCT orangutan ---------- ---------- ---------- ---------- ---------- gibbon CCTTTTATAG CAAATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCT colobus_monkey CCTTTTATAG CAAATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCT vervet ---------- ---------- ---------- ---------- ---------- baboon CCTTTTATAG CAAATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCT macaque CCTTTTATAG CAAATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCT dusky_titi CCTTTTATAG TAAACA---- -ATTTG-AAA ATGTTTATAA GGAACCAGCT owl_monkey CCTTTTATAG CAAATA---- -ATTTG-AAA ATGTTTGTAA GGAACCAGCT squirrel_monkey CCTTTTATAG CAAATA---- -ATTTG-AAA ATGTTTATAA GGAACCAGCT marmoset CCTTTTATAG TAAATA---- -ATTTG-AAA ATGTTTATAA GGAACCAGCT galago TCTTTTATAG CTAATA---- -ACTTGGAAA ATGTTTGTAA GGAATTAGCA mouse_lemur CCTTTTATAG CTAATA---- -ATTTGGAAA ATGTTCATAA GGAACCAGCA lemur CCTTTTATAG CTAATA---- -ATTTGGAAA ATGTTCATAA GGAACCAGCA rabbit CCTTTTGGAG CTAATA---- -ATTTGAGAA ATGTATATAA GGAACCAGCA st_squirrel TCTTTTATAG CTAATA---- -CTTTGAAAA ATGT-TGTGA GAAA-CAGCA guinea_pig CCTTTTATAG CTAATA---- -ACTTTTAAA A--T-TATAA GAAACCAGCA rat CCATTTATAG CTAATA---- -A-------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CCATTTATAG ATAATT---- -A-------- ---------- ---------- shrew CAAGTCACG- -TGATA---- -G-------- ---------- ---------- rfbat CCTTTTTGAA CTAATA---- -ATTTGGAAC ATGTTTATAA GGAACCAGTA cpbat ---------- ---------- ---------- ---------- ---------- cat CCTTTTATAG CTAATA---- -ACTCGAAAC ATGTTTATAA GGAACCAGCA clouded_leopard CCTTTTATAG CTAATA---- -ACTCGAAAC ATGTTTATAA GGAACCAGCA ferret CCTTTTATAG CTAATA---- -ATTTGAAAA ------ATAA GGAACTAGTA dog CCTTTTATAG CTAATA---- -ATTTGAAAA ATGTTTATAA GGAACGAGCA pig CCTTTTATAG CTAATA---- -ATTTGAAAA ATATTTATAA GGAACCAGCA muntjak_indian CCTTTTATAG CTGATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGC- sheep CCTTTTATAG CTGATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCA cow CCTTTTATAG CTGATA---- -ATTTGAAAA ATGTTTATAA GGAACCAGCA horse ---------- ---------- ---------- ---------- ---------- armadillo CCTTTGATAG CTAATA---- -A-------- ---------- ---------- elephant CCTTTTATAG CTAATA---- -ATTTGAAAA ATGTTTATAA GTAACCAGCA tenrec CCTTTTATAG TTAATA---- -ATTTGAAAC ATGTTTAGAA ATAACCAGCA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ACTAGACAAA CCAGGACACA GATTTGACA- --GTTTGTGG TTAACCCAGA opossum ACTTGAAAAA CCAGGACACA GATTTGACA- --GTTTGTGG GTAACCCAGA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TAAATATTAT TTAAAATCAA AACAGAAAAT T--------- ----CATTCC chimp TAAATATTAT TTAA------ ---------T T--------- ----CATTCC gorilla TAAATATTAT TTAA------ ---------T T--------- ----CATTCC orangutan ---------- ---------- ---------- ---------- ---------- gibbon TAAATATTAT TTAA------ ---------T T--------- ----CATTCC colobus_monkey TAAATATTAT TTAA------ ---------T T--------- ----CATTCC vervet ---------- ---------- ---------- ---------- ---------- baboon TAAATATTAT TTAA------ ---------T T--------- ----CATTCC macaque TAAATATTAT TTAA------ ---------T T--------- ----CATTCC dusky_titi TAAACATTAT TTAA------ ---------T T--------- ----CATTCC owl_monkey TAAACATTAT TTAA------ ---------T T--------- ----CATTCC squirrel_monkey TAAACATTAT TTAA------ ---------T T--------- ----CATTCC marmoset TACACATTAT TTAA------ ---------T T--------- ----CATTCC galago TAAATACTAT TTAA------ ---------C T---GGGTCA GCTTCATTCC mouse_lemur TA--TATTAT TTAA------ ---------T T----GGTCA GCTTCATTCC lemur TA--TATTAT TTAA------ ---------T T----GGTCA GCTTCATTCC rabbit TCAATGTTAT TTAA------ ---------T T----GGTCC ACTTCATTCC st_squirrel TAAATTTTAT TTAA------ ---------T T----GGTCA GCTTCATTCC guinea_pig TAAATATTAT TTTA------ ---------T T----GGTCA GCTTCATTCC rat ----TATCAT TTCG------ ---------C T----GGGAA GCTTCATTCC mouse ---------- ---------- ---------- ---------- ---------- hedgehog ----TATT-- ---------- ---------T C----GGTCA GCTTCATTCC shrew ---------- ---------- ---------T T----GGTCA GCTTCATTCC rfbat TAAATATTAT TTAA------ ---------T T----GGTCA GCTTCATTCC cpbat ---------- ---------- ---------- ---------- ---------- cat TAAATATTAT TTAA------ ---------T T----GGTCT GCTTCATTCC clouded_leopard TAAATATTAT TTAA------ ---------T T----GGTCT GCTTCATTCC ferret TAAAGATTAT TTAA------ ---------T A----GGTCT GCTTCATTCT dog TGAGGATTAT TTAA------ ---------T T----GGTCT GCTTCATTCC pig TAAACATTAT TTAA------ ---------T T----GGTCA GCTTCATTCC muntjak_indian TAAATATTAT TTAA------ ---------T T----GGTCA GCTTCATTCC sheep TAAATATTTT TTAA------ ---------T T----GGTCA GCTTCATTCC cow TAAATATTAT TTAA------ ---------T T----GGTCA GCTTCATTCC horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------T T----GATCA ACTTCATTCC elephant TAAATATT-- ---------- ---------T T----GGTCA GTTTCATTCC tenrec TAAATATT-- ---------- ---------T T----GGGCA GTTTCATTCC wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ----GAAT-- ---------- ---------T TTGAAGGTCA ACCTCATTCC opossum ----GAAT-- ---------- ---------T TTGAAGGTCA ACCTCATTCC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AATATTATTA AAGAAGTCTT AGTAA----T GCTTGT---- --TTAGTAAT chimp AATATTATTA AAGAAGTCTT AGTAA----T GCTTGT---- --TTAGTAAT gorilla AATATTATTA AAGAAGTCTT AGTAA----T GCTTGT---- --TTAGTAAT orangutan ---------- ---------- ---------- ---------- ---------- gibbon AGTATTATTA AAGAAGTCTT AGTAA----C GCTTGT---- --TTAGTAAT colobus_monkey AATATTATTA AAGAAGTCTT AGTAATACTT GCTTGT---- --TTAGTAAT vervet ---------- ---------- ---------- ---------- ---------- baboon AATATTATTA AAGAAGTCTT AGTAACACTT GCTTGT---- --TTAGTAAT macaque AATATTATTA AAGAAGTCTT AGTAACACTT GCTTGT---- --TTAGTAAT dusky_titi AATACTATTA AAGAAGTCTT AGTAACACTT GCTCGT---- --TTAGTAAT owl_monkey AATACTATTA AAGAAGTCTT AGTAACACTT GCTCGT---- --TTAGTAAT squirrel_monkey AATACTATTA AAGAAGTCTT AGTAACACTT GCTCGTGCTC GTTTAGTAAT marmoset AATACTATTA ACGAAGTCTT AGTAACACTT GCTCAT---- --TTAGTAAT galago AAGATGATTA AAGAAGTCTT AGTAACACTT -CTTGT---- --TTAGTAAT mouse_lemur AAGATGATTA AAGAAGTCTT AGTAACACTT GCTTGT---- --TTAGTAAT lemur AAGATGATTA AAGAAGTCTT AGTAACACTT GCTTGT---- --TTAGTAAT rabbit AAAATGATTA AAGATGTCTT AACTACACTT ACTTGT---- --TTAGTAAT st_squirrel AAGGTGATTA AAG-AATCTT GGTAACACTT GCTTAT---- --TTAGTAAT guinea_pig AAGGTGATTA AAGAAGTCTT AGTAACACTT GCTTAT---- --TTAGTAAT rat ACGGTGATTA ACG--GTCTG AGTAACACTT GCTTAT---- --TTAGTAAT mouse ---------- ---------- ---------- ---------- ---------- hedgehog AAGATGATTA AAGAAATCTT AGTAA----T GCTTGT---- --TTAGTAAT shrew AAGATGATTA AAG---CCTC AGTACCACTT GCTTGT---- --TTAGTAAT rfbat AAGATGATTA AAGAAGTCTT AGTAACGCTT GCTTGT---- --TTAGTAAT cpbat ---------- ---------- ---------- ---------- ---------- cat AAAATGATTA AAGAAGTCTT AGTAACACTT GCTTGT---- --TTAGTAAT clouded_leopard AAAATGATTA AAGAAGTCTT AGTAACACTT GCTTGT---- --TTAGTAAT ferret AAAATGATTA AAGAAGTCTT AGTAACACTT GCTTGT---- --TTAGTAAT dog AAAATGATTA AAGAAGTCTT AGTAACCCTT GCTTGT---- --TTAGTAAT pig ATGATGATTA AAGAAATCTT AGTAACACTT GCTTGT---- --TTAGTAAT muntjak_indian AAGATGATTA AAGAATTCTT AGTAACACTT GTGTGT---- --TTAGTAAT sheep AAGATGATTA AAGAATTCTT AGGAACACTT GTGTGT---- --TTAGTAAT cow AAGGTGATTA AAGAATTCTT AGTAACACTT GTGTGT---- --TTAGTAAT horse ---------- ---------- ---------- ---------- ---------- armadillo AAGATGATTC AAGAAATATT GGTAACACTT GCTTGT---- --TTAGTAAT elephant AAGATGATTA AAGAAGTCTT GGTAACACTT GCTTAT---- --TTAGTAAT tenrec AAGATGATTA AAGGAGTCTT GGTAACACTT GCTTAT---- --TTAGTAAT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis AAAATGATTA AAGCAGTCTT AGTAATACTT ACTTGT---- --TTGGTAAT opossum AAAATGATTA AAGCAGTCTT AGTAATACTT ACTCGT---- --TTGGTAAT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TACTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG chimp TACTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG gorilla TACTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG orangutan ---------- ---------- ---------- ---------- ---------- gibbon TACTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG colobus_monkey TACTCCAGAG GG-AATTTGG TTATGAAAAC AGCA------ --TGAATCAG vervet ---------- ---------- ---------- ---------- ---------- baboon TACTCCAGAG GG-AATTTGG TTATGAAAAC AGCA------ --TGAATCAG macaque TACTCCAGAG GG-AGTTTGG TTATGAAAAC AGCA------ --TGAATCAG dusky_titi TACTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG owl_monkey TACTCTAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG squirrel_monkey TACTCCAGAG GGAAATT-GG TTATGAAAAC AGCA------ --TGAATCAG marmoset TACTCCAGTG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG galago TGCTCCGGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG mouse_lemur TGCTCCAGAG GGAAATTTCG TTATGAAAAC AGCA------ --TGAATCAG lemur TGCTCCAGAG GGAAATTTCG TTATGAAAAC AGCA------ --TGAATCAG rabbit TGCTCCAGAG GGAAATTTGG TTATAAGAAC TGCT------ --TGAATCAG st_squirrel TGCTCCAGAG GGAAATTTGG TTATGAAAAC AGCATGAATC AGAGAATCAG guinea_pig TGCTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG rat TGCTCCACAG GGAAATTTGG TTAT-AAGGC AGCA------ --AGACTCAC mouse ---------- ---------- ---------- ---------- ---------- hedgehog TGCTCTAGAG GAAAACTTCA TTATGAAAAT AGCA------ --TGAATCAT shrew T-TTCCAGAG GGAAGCTTGG TTATGAAAAC ACCA------ --TGAATCAG rfbat TGGCTCAGAG GGAAA-TTGG TTATGAAAAC AGCA------ --TG-ATCAG cpbat ---------- ---------- ---------- ---------- ---------- cat TGCTCCGGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG clouded_leopard TGCTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG ferret TGCTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG dog TGCTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG pig TGCTCCAGAG GGAAATTTGA TTATGAAAAC AGCA------ --TGAATCAT muntjak_indian TGCTCCAGAG GGGAATTTGG TTATGAAAAC AGCA------ --TGAATCAG sheep TGCTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG cow TGCTCCAGAG GGAAATTTGG TTATGAAAAC AGCA------ --TGAATCAG horse ---------- ---------- ---------- ---------- ---------- armadillo AGCTCCAGAG GGAAATTTGA TTATGAAAAC AGCA------ --TGAATCAG elephant TGCTCCAGAG GGAAATTTGG TTATGAAAAC AGCT------ --TGAATCAG tenrec GGCTCCAGAG GGAAATCTGG TTATGAAAAC AGCA------ --TGAATCAG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis TGCTTTGGAG GGAGATTTAG TTATGAAAGC AGCA------ --TGAAACAG opossum TGCTCTGGAG GGAGATTTAG TTATGAAAGC AGCA------ --TGAAACAG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA chimp ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA gorilla ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA colobus_monkey ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA vervet ---------- ---------- ---------- ---------- ---------- baboon ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA macaque ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA dusky_titi ---ATGATCT CACCGTGAAT A---CTGCG- TAATATC-TT CCAGACCCAA owl_monkey ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA squirrel_monkey ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA marmoset ---ATGATCT CACCCTGAAT A---CGGCA- TAATATC-TT CCAGACCCAA galago ---ATGATCT CACCCTGAAT AGTGCTGCA- TAATATC-TT CCAGACCCAA mouse_lemur ---ATGATCT CATCCTGAAT AGAACTGCA- TAATATC-TT CCAGACCCAA lemur ---ATGATCT CATCCTGAAT AGTACTGCA- TAATATC-TT CCAGACCCAA rabbit ---ATGATCT CATCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA st_squirrel ---ATGACCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGATCCAA guinea_pig ---ATGATCT CACTCC-AAT G---CTGCA- TAATATC-TT CCAGACCCAA rat ---ATGATCT CATCCTGAAC A---CTGTA- TAATATC-TT CCAGATCCAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---ATGATCT CACTCTGAGT A---CTGCA- TAATATC-TT CCAGATCCAA shrew ---ATGATCT CACCCCGAAT A---CTGCA- TAATATC-TT CCAGACCCAG rfbat ---ATGATCT CACCGTGAAT A---CCGCA- TAATATC-TT CCAGACC--- cpbat ---------- ---------- ---------- ---------- ---------- cat ---ATGATCT CACCCTGAAT G---CTGCA- TAATATC-TT CCAGATTCAA clouded_leopard ---ATGATCT CACCCTGAAT G---CTGCA- TAATATC-TT CCAGATTCAA ferret ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACTGAA dog ---ATGATCT CACCCTGAAT G---CTGCA- TAATATC-TT CCAGACTCAA pig ---ATGATCT CACCATGAAT A---CTGAA- TAACATC-TT CCAGATGCAA muntjak_indian ---ATGATCT CACTATGAAT A---CTGAA- TAATATC-TT CCAGACCTAA sheep ---ATGATCT CACTATGAAT A---CTGAA- TAATATC-TT CCAGACCTAA cow ---ATGATCT CACTATGAAT A---CTGAA- TAATATC-TT CCAGATGTAA horse ---------- ---------- ---------- ---------- ---------- armadillo ---ATGATCT CATCATGTGT A---CTGCA- TAAAATCTTT CCAGACCCAA elephant ---ATGATCT CACCCTGAAT A---CTGCA- TAATATC-TT CCAGACCCAA tenrec ---ATGATCT CACCCTGAAT A---TTGCAG TAATATC-TT CCAGACCCAA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ATTATGATCT CACTCTAAAT T---CTTTA- TAATATC-TT CCAGACCCAA opossum ATTATGATCT CACTCTAAAT T---CTTTA- TAATATC-TT CCAGACCCAA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATTGTCTCCA GATCAACTCA GACCATG-TT TGAAATACCA GATG--TTtt chimp ATTGTCTCCA GATCAACTCA GACCATG-TT TGAAATACCA GATG--TTTT gorilla ATTGTCTCCA GATCAACTCA GACCGTG-TT TGAAATACCA GATG--TTTT orangutan ---------- ---------- ---------- ---------- ---------- gibbon ATTGTCTCCA AATCAACTCA GACCATG-TT TGAAATACCA GATG--TTTT colobus_monkey ATTGTCTCCA AATCAATTCA GACCATG-TT TGAAATACCA GATG--TTtt vervet ---------- ---------- ---------- ---------- ---------- baboon ATTGTCTCCA AATCAATTCA GACCATG-TT TGAAATACCA GATG--TTTT macaque ATTGTCTCCA AATCAATTCA GACCATG-TT TGAAATACCA GATG--TTTT dusky_titi ATTGTCTCCA AATCAACTCA GACCGTG-TT TGAAATACCA GATG--TTTT owl_monkey ATTGTCTTCA AATCAACTCA GACCATG-TT TGAAATACCA GATG--TTTT squirrel_monkey ATTGTCTTCA AATCAGCTCA GACCATG-TT TGAAATACCA GATG--TTTT marmoset GTTGTCTTCA AATCAACTCA GACCATG-TT TGAAATACCA GATG--TTTT galago ATTGTCTCCA AACCAACTCA GATCGTG-TT TGAAATACCA GATG--TTTT mouse_lemur ATTGTCTCCA AATCAACTTA GACCATA-TT TGAAATACCA GATG--TTTT lemur ATTGTCTCCA AATCAACTCA GATCATG-TT TGAAATACCA GATG--TTTT rabbit ATTGTCTCAA ACTCAACTCA GATCATG-TT TGAAAAACCA GATG--TTGT st_squirrel ATTATCTCCA GATCAACTCA GACTATG-TT TGAAATACCA GATG--TTTT guinea_pig ATTGTCTTCA GATCAACTCA GACCATG-TT TGAAATACCA GATG--TTTT rat ATTGTCTCCA GATTAACCCA GCCCATG-TT TGAAATACCA GATG--TTTT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ATTATCTGCA AATCAACTCA GACTCTGAGT TGAAATACCA GATG--TTTT shrew ATTATTTCCA AATCAACTCA GACCCTG-TT TGAAATACCA GATG--TTTT rfbat --------CA AATCAACTCA GACCATG-TT TGAAATACCA TATG--TTTT cpbat ---------- ---------- ---------- ---------- ---------- cat ATTATCTCCA AATCAACTCA GACCATG-TT TAAAATACCA GATG--TTCT clouded_leopard ATTATCTCCA AATCAACTCA GACCATG-TT TGAAATACCA GATG--TTTT ferret ATTATCGCCA AATCAATTCA GACCATG-TT TGAAATACCA GATG--TTTT dog ATTATCTCCA AATCAACTCA GACCATG-TT TGAAATACCA GATG--TTTT pig ATTGTAGCCA AATCAACTTA GACTATG-TT TGAAATACCA GATG--TTTT muntjak_indian ATTGTATCCA AATCAAGTCA GACTGTA-TT TGAAATACCA GATG--TTTT sheep ATTGTATCCA AATCAAGTCA GACTGTA-TT AGAAATACCA GATG--TTTT cow ATTGTATCCA AATCAAGTCA GACTGTA-TT CAAAATACCA GATG--TTTT horse ---------- ---------- ---------- ---------- ---------- armadillo ATTGTCTCCA AATCAATTCA GATCATG-TT TGAAATTCCA GATG--TTTT elephant ATTGTCTCCA AATCAACTCA GACCATG-TT TGAAATACCA GATG--TTTT tenrec GTTGTCTCC- -ATCAACTCA GGCTATG-TT TGAAATACCA GATGAATTTT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ATTGTCCATA AATCAGCCCA GGGCATA-TT TGAAATACCA GATG--TTTT opossum ATTGTCCATA AATCAGCCCA GGGCATA-TT TGAAATACCA GATG--TTTT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -------t-- t---AAGTAT CTGACATGCA GTAC-CTTT- ---------- chimp -------T-- T---AAGTAT CTGACATGCA GTAC-CTTT- ---------- gorilla -------T-- T---AAGTAT CTGACATGCA GTAC-CTTT- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon -------T-- T---AAGTAT CTGACATGCA ATAC-CTTT- ---------- colobus_monkey -------t-- tttAAAGTAT CTGACATGCA ATAC-CTTT- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon -------T-- AAAAAAGTAT CTGACATGCA ATAC-CTTT- ---------- macaque -------T-- AAAAAAGTAT CTGACATGCA ATAC-CTTT- ---------- dusky_titi -------T-- A---AAGTAT CTGACATGCA ATAC-CCTT- ---------- owl_monkey -------T-- A---AAGTAT CTGACATGCA ATAC-CCTT- ---------- squirrel_monkey -------T-- A---AAGTAT CTGACATGCA ATAC-CCTT- ---------- marmoset -------T-- A---AAGTAT CTGACATGTA ATAC-CCCT- ---------- galago -------T-- A---AAATAT CTGACATCCA ACATACCTT- ---------- mouse_lemur -------T-- A---AAGTAT CTGACATGCA ATAC-CCTT- ---------- lemur -------T-- G---TAGTAT CTGACATGCA ATAC-CCTT- ---------- rabbit -------T-- A---AAGTAT CTGACATGCA ATAC-TCTT- ---------- st_squirrel -------T-- A---AAGTAT CTGACATACA ATAC-CCTC- ---------- guinea_pig -------T-- A---CAGCAT CTGACGTGCA ATAC-CCTC- ---------- rat -------T-- C---AAGTAT ATAACATGCA AT-C-TCTG- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog -------T-- A---CAGTAT CTGACATACA ATAC-ACTT- ---------- shrew -------TAA A---AAATAT CTGATATGCA TTAC-CCTT- ---------- rfbat -------T-- A---CAGTAT CTGACATGCA ATAC-TCTT- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat -------T-- A---AAGTAT CTGACATGCA ATAG-CCTT- ---------- clouded_leopard -------T-- A---AAGTAT CTGACATGCA ATAG-CCTT- ---------- ferret -------T-- A---AAGTAT CTGACATACA ATAC-TCTT- ---------- dog -------T-- A---AAGTAT CTGACAAGCA ATAC-TCTT- ---------- pig -------T-- A---AAGTAT CTGACATGCA ATAC-CTTT- ---------- muntjak_indian -------T-- A---AAGTAT CTGATATGTA ATAC-CCTT- ---------- sheep -------T-- A---AAGTAT CTGATATGTA ATAC-CCTT- ---------- cow -------T-- A---AAGTAT CTGATATGTA ATAC-CCTT- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo -------T-- A---AAGCAT TTGACATGCA ATAC-TCTT- ---------- elephant TTTTGTTT-- A---AAGTAT CTGACATGAA ATAG-CCTT- ---------- tenrec ---------- ------GCAT CTCTCCTGCA ATAC-CCTT- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis -------T-- A---AAGTCG CTGACATGTA CTAC-CCCCC TATACCCCAC opossum -------T-- A---AAGTCG CTGACATGTA CTCC-CCCT- --TCCCCCTC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ----TTCTGG GTCAGAAGGG TCACCTGAAA TGTTGCCAAC CTATTCGACT chimp ----TTCTGG GTCAGAAGGG TCACCTGAAA TGTTGCCAAC CTATTCGACT gorilla ----TTCTGG GTCAGAAGGG TCACCTGAAA TGTTGCCAAC CTATTCGACT orangutan ---------- ---------- ---------- ---------- ---------- gibbon ----TTCTGG GTCAGAAGGG TCACCTGAAA TGTTGCCAAC CTATTCGACT colobus_monkey ----TTCTGG GTCAGAAGGG TGACCTGAAA TGTTGCCAAC CTATTTGACT vervet ---------- ---------- ---------- ---------- ---------- baboon ----TTCTGG GTCAGAAGGG TGACCTGAAA TGTTGCCAAC CTATTTGACT macaque ----TTCTGG GTCAGAAGGG TGACCTGAAA TGTTGCCAAC CTATTTGACT dusky_titi ----TTCTGG GTCAGAAGGG TGACCTGAAA TGTTACCAAC CTATTTGGCT owl_monkey ----TTCTGG GTCAGAAGGG TGACCTGAAA TGTTGCCAAC CTATTTGGCT squirrel_monkey ----TTCTGG GTCAGAAGGG TGACCTGAAA TGTTGCCAAC CTATTTGGCT marmoset ----TTCTGG GTCAGAAGGG TGACCTGAAA TGTTTCCAAC CTATTTGGCT galago ----TTCTGA GTCAGAAGGG TCACCTGAAA TGTTGCCAAC CTTTCTGGCT mouse_lemur ----TTCTGA GTCAAAAGGG TCACCTGAAA TGTTGCCAAT CTATCAGGCT lemur ----TTCTGA GTCAGAAGGG TCACCTGAAA TGTTGCCAAC CTATCTGGCT rabbit ----TTCTGG GTCA-GAGGG TCACCTGAAA TGTTGCCAGC CTATCTGGTT st_squirrel ----TTCTGG GTCAGAAGGG TAACCTGAAA TGTTGCCAGC CTATCTGGCT guinea_pig ----TTCTCG GTCAGGAAGG TCACCTGAAA TGTTGCCAGC CTATCTGGTT rat ----CTCTGG ATCAAGAGGG TCACCTGAAA TGTCGCCAAC ATATCTGGTT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ----TCCAGG TCCATAGGGG CCATCTGAAA TGTTGCCAAT CCATGTGTCT shrew ----TCCTGG ATCAAAGGGG TCATTTGAAG TGTTGCCAGA CTATCTGGTT rfbat ----TTCTGG GTCAGAAGGG TCACCTGAAA TGTTGCCAAC CTATCTGGTT cpbat ---------- ---------- ---------- ---------- ---------- cat ----TCCTGG GTCAGAAGGG TCACTTGAAA TGTTGCCAAC CTATCTGGTT clouded_leopard ----TCCTGG GTCAGAAGGG TCACTTGAAA TGTTGCCAAC CTATCTGGTT ferret ----TCCTGG GTCAGCAGGG TCACTTGAAA TGTTGCCAAC CTATCTGGTT dog ----TCCTGG GTCAGAAGGG TCACTTGAAA TGTTGCCAAC CTATCCGGTT pig ----TCCTGG GTCAGAAGGG TCACCTGAAA TGTTGCCAAC CTAACTGGTT muntjak_indian ----TCCTGG GTCAGAAGGG TCACCTGAAA TATTGCCAAC CTATGTGGTT sheep ----TCCTGG GTCAGAAAGG TCGCCTGAAA TACTGCCAAG CTATGTGGTT cow ----TCCTGG GTCAGAAGGG TCACCTGAAA TATTGCCAAC CTATGTGGTT horse ---------- ---------- ---------- ---------- ---------- armadillo ----TCTTTG GTCAAAAGAG TCACCTGAAA TGTTGCCAGC -TATCAGATT elephant ----TCTTGG GTTAGTGGGA TCACCTGAAA TGTTACCAAC GTGTCTGGTT tenrec ----TCTTGG GTCAAAAGAG TCACCTGAAA TGTTGCCAGC CTATCTGGTT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis CCCTTTCTT- -------GGG TCATCTGAAA TGTCACCAGT CTTTCTGGTT opossum CCCTTTCTT- -------GGG TCATCTGAAA TGTCACCAGT CTTTCTGGTT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GCTGAAAA-T TATGAATATG GATACATTGA TTCCATTTTC TCCCAATATA chimp GCTGAAAA-T TATGAATATG GATACATTGA TTCCATTTTC TCCCAATATA gorilla GCTTAAAA-T TATGAATATG GATACATTGA TTCCATTTTC TCCCAATATA orangutan ---------- ---------- ---------- ---------- ---------- gibbon GCTTAAAA-T TATGTATATG GATAAATTGA TTCCATTTTC TCCCAATATA colobus_monkey GCTTAAAA-T TATGAATATG GATAAATTGA TTCCATTTTC TTCCAATATA vervet ---------- ---------- ---------- ---------- ---------- baboon GCTTAAAA-T TATGAATATG GATAAATTGA TTCCATTTTC TTCCAATATA macaque GCTTAAAA-T TATGAATATG GATAAATTGA TTCCATTTTC TTCCAGTATA dusky_titi GCTTAAAA-T TATGAATATG GATAAATTGA TTCCATTTTC TCCCAATATA owl_monkey GCTTAAAA-T TGTGAATATG GATAAATTGA TTCCATTTTC TCCCAATATA squirrel_monkey GCTTAAAA-T TATGAATATG GATAAATCGA TTCCATTTTC TCCCAATATA marmoset GCTTAAAA-T TATGAATATG AATAAATTGA TTCCATTTTC TCCCAATATT galago GCCTAAAA-T TATGAATATG GAAAAATTGA TTCCATTTTT TCCGAATATA mouse_lemur GCTTAAAA-T TATGAATATG GAGAAATTGA TTCCATTTTC TCCGAATATA lemur GTTTAAAA-T TATGAAAATG GAGAAATTGA TTCCATTTTC TCCGAATATA rabbit GCTTGAAA-T GATGAATATG GAGAAATTGA TTCCATTTTC TCCGAATATA st_squirrel GCTTAAAA-T TATGAATATG GAGAAACTGA TACCATTTTC TCCAAATATA guinea_pig GCTTGAAA-T TATGAAAATG TAGAAATTGA TTCCATTTTC TCCGAATATA rat TCTTGACA-T TGTGATTATG GAGAAATTGA TGCCACTTTC TCCGAATATA mouse ---------- ---------- ---------- ---------- ---------- hedgehog GCCTGAAA-T TATGAATGTG GAGAAATTGA TCTCATTTCT TCTAAGTACA shrew GCCTGAAA-T TATAAATATG GAGAAATTGA TCCCATATTT CC-----AGA rfbat GTCTGAAA-T TATGAATATG GAGAAATTGA TTCTATTTTT TCCGAATATA cpbat ---------- ---------- ---------- ---------- ---------- cat ACCTGAAA-T TATGAATACA GAGAAATTGA ------CTTT TCCAAATATA clouded_leopard ACCTGAAA-T TATGAATACA GAGAAATTGA ------CTTT TCCAAATATA ferret ACCTGAAA-T TATGAATATG GAGAAATTGA TTCCATTTTT TCCAAATATA dog ACCTGGAA-T TATGAATGCG GAGAAATTGA TTCCATTTTT TCCAAATATA pig GCCTGAGA-T TATGAATATG GAGAAATTGA TCCCATTTTT CCCGAATATA muntjak_indian GCCTGAAA-T GATAAATACA GAGAAATTGA TCCCATTTTT TCCAAATATA sheep GCCTGAAA-T TATAAATATG GAGAAATTGA TCCCATTTTT TCCAAATATA cow GCCTGAAA-T TATAAATATG GAGAAATTGA TCCCATTTTT CCCAAATATA horse ---------- ---------- ---------- ---------- ---------- armadillo GCCTGAAA-T TATGAATATG GTGAAATCCA ATCCATTTTC TCTGAATATA elephant GCCTGAAA-T TATGAATATG GAGAAATTGA TTCCATTTTC TCTGAATATA tenrec GTCTGAAA-T CATGAATACG GAGAAACTGA CTCCAT---- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ACTTGGAAGT TTTGTGTCTA AAGAAATTTA TTCCAT---- -------AAA opossum ACTTGGAAGT TTTGTGTCTA AAGAAATTTA CTCCAT---- -------AAA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GTCAATCCAA AG-GACCTGT TTTCTTGGAC GCTG------ -------AAG chimp GTCAATCCAA AG-GACCTGT TTTCTTGGAC GCTG------ -------AAG gorilla GTCAATCCAA AG-GACCTGT TTTCTTGGAC GCTG------ -------AAG orangutan ---------- ---------- ---------- ---------- ---------- gibbon GTCAATCCAA AG-GACCTGT TTTCTTGGAC ACTG------ -------AAG colobus_monkey GTCAATCCAA AG-GACCTGT TTTCTTGGAT GCTG------ -------AAG vervet ---------- ---------- ---------- ---------- ---------- baboon GTCAATCCAA AG-GACCTGT TTTCTTGGAT GCTG------ -------AAG macaque GTCAATCCAA AG-GACCTGT TTTCTTGGAT GCTG------ -------AAG dusky_titi GTCATTCCAA AT-GACCTGT TTTCTTGGAT GCTG------ -------GAG owl_monkey GTCAATCCAA AG-GACCTGT TTTCTTGGAT GCTG------ -------AAG squirrel_monkey GTCAATCCAA AG-GACCTGT TTTCTTGGAT GCTG------ -------AAG marmoset GTCAATCCAA AG-GACCTGT TTTCCTGGAT GCTG------ -------AAG galago GTCAATCCCA AG-GACCTGT TTTCTTGGAC ACTA------ -------AAG mouse_lemur GTCAATCCCC AA-GACCTGT TTACTTGGAC ACTG------ -------AAG lemur GTCAATCCCA AG-GACCTGT TTTCTTGGAC ACTG------ -------AAG rabbit GTCAATCCAA AG-GACCTGT TTTCTTGGAC GCTG------ -------AAG st_squirrel GTCAGTCCAA AG-GACCTGT TTTCTTGCTT ACTG------ -------AAG guinea_pig GTCAATTCAA AA-GACCTGT TTTCTTGGAT ACTA------ -------ACG rat GTCAATCCAG AG-GAACTGT TTTCTTGGAC AATA------ -------AAG mouse ---------- ---------- ---------- ---------- ---------- hedgehog ATTAATCTAG AG-GACCAGT TTTCTTAAAT ACAGTAAAAG AAAAGAAAGA shrew AACAGCCCAG AG-GACCTGT TTTCTTGGAT ACTG------ -------AAA rfbat GTCAACCCGA AG-GACCTGT TTTCTTGGAT ATTG------ -------AAG cpbat ---------- ---------- ---------- ---------- ---------- cat GTCAATCCAA AG-GATCTGT TTTTTTGGAC ACTG------ -------AAG clouded_leopard GTCAATCCAA AG-GATCTGT TTTTTTGGAC ACTG------ -------AAG ferret GTCAACCCAA AG-GATTTGC TCTTTTGGAT GCT------- ---------G dog GTCAATCCAA AG-GATCTGG TTTTTTGGAC ACTG------ -------AAG pig GTCAATCCAA AA-GACCTGT TTTCTTGGAC ACTG------ -------AAG muntjak_indian GTCAATCCAA AG-GACCTGT TTTCTTGGAC ACTA------ -------AAG sheep GTCAATCCAA AG-GACCTGT TTTCTTGGAC ACTG------ -------AAG cow GTCAATCCAA AG-GACCTGT TTTCTTGGAC ACTG------ -------AAG horse ---------- ---------- ---------- ---------- ---------- armadillo ATTAATCCAA AA-GACATGT TTTCTTGGAC ACTG------ -------AAG elephant GTCAGTCCAA AG-GACCTGT CTTCTTAGAC ACTG------ -------AAA tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- -----CCCAA ATG------- --------AG monodelphis ACCTTTTAAA AGCGACCTAT TGCCTCTGAC AAG------- --------AG opossum ACCGTTTAAA AGGGACCTAT TGCCTCCGAC AAG------- --------AG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAGAAAAA-- TTATTC--TG TCATATCCTT TTATT--GAT GCT----GGC chimp AAGAAAAA-- TTATTC--TG TCATATCCTT TTATT--GAT GCT----GGC gorilla AAGAAAAA-- TTATTC--TG TCATATCCTT TTATT--GAT GCT----GGC orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAGAAAAA-- TTATTC--TG TCATATCCTT TTATT--GAT GCT----GGC colobus_monkey AAAAAAAA-- TTACTC--TG TCATATCCTT TTATT--GAT GCT----GAC vervet ---------- ---------- ---------- ---------- ---------- baboon AAAAAAAA-- TTATTC--TG TCATATCCTT TTATT--GAT GCT----GAC macaque AAAAAAAA-- TTATTC--TG TCATATCCTT TTATT--GAT GCT----GAC dusky_titi AAGAAAAA-- TTAATT--TA TCATAACCTT TCATT--AAT GCT----GGC owl_monkey AAGAAAAA-- TTAATT--TA TCATAATCTT TTATT--AAT GCT----GGC squirrel_monkey AAGAAAAA-- TTAATT--TA TCATAACCTT TTATT--AAT GCT----GGC marmoset AAGAAAAA-- TTAATT--TA TCATAACCTT TTATT--AAC GCT----GGC galago AAGAAAAA-- TTAATC--TG TCGTATCCTT GTATT--GAT GCT----GGC mouse_lemur AAGAAAAA-- TTAATC--TG TCATGCCCCT GTATT--GAT GCT----GGC lemur AAGAAAAA-- TTAATC--TG TCATACCCTT GTATT--GAT GCT----GGC rabbit AAGAAAAA-- TTAATC--TG TCATATCCTT GTATT--GAT GCT----GGC st_squirrel AAGAAAAA-- TTAATC--TG TCATATCCTT GTATT--GAT GCT----GGC guinea_pig AAGAAAAA-- -TTATC--TG TCATATCCTT GTATT--GAT GCT----GGC rat GAGAAAAAAT TTAATC--TG TCATATCCTT CTATT--GAC ACT----GGC mouse ---------- ---------- ---------- ---------- ---------- hedgehog AAGAAAAA-- AAAATCACTG CCTTTTTTTT GTATT--GGT GCT----CAC shrew AAGAAATA-- CTAATT--TG CTATATTCTT GTATT--CAT GCT----TGC rfbat AAGAAAAA-- TTAATC--TG TCGTATCCTT GTATT--GAT GCTGGCCAGC cpbat ---------- ---------- ---------- ---------- ---------- cat AAGAAAAA-- TTAATC--TG TCATATCCTT GTATT--GAC GCT----GGC clouded_leopard AAGAAAAA-- TTAATC--TG TCATATCCTT GTATT--GAC GCT----GGC ferret AAGAGAAA-- TTAATC--TG TTATATCCTT GTATT--GAT ACT----GGC dog AAGAAAAA-- TTAATC--TG TCGTAT-CTT GTATT--GAT GCT----GGC pig AAGAAAAA-- TTAATC--TG TCATATCCTT GTATT--GAT GCT----GGC muntjak_indian AAGAAAAA-- TTAATC--TG TCATATCCTT GTATT--GAT GCT----GGC sheep AAGAAAAA-- TTAATC--TG TCATATCCTT GTATT--GAT GCT----GGC cow AAGAAAAA-- TTAATC--TG TCATGTCCTT GTATT--GAT GCT----GGC horse ---------- ---------- ---------- ---------- ---------- armadillo AAGAAAAA-- TTAATC--TG TGACATCCTT GTACT--GAT GTT----GGC elephant AACAAAAA-- TTAATC--TG TCATATCCTC GTACT--GAT GCC----GGC tenrec ---------- ---------- ----ATCCTT TTACTATGAT GCT----GAC wallaby GAAGGAGA-- GAGTTG--CA CTAT---CTT CTTGT--TG- ---------- monodelphis GAGCGAGA-- TTGTTT--CA TTTT---CTT TTTTT--TT- -AT----GCC opossum GAGGCGAA-- TTGTTT--CA TTAT---CTT TTTTT--TTT CAT----GTC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAGAATGTGT TACTAAAATT ATATGA--A- ---GTAGACA GCTTTGAGAC chimp CAGAATGTGT TACTAAAATT ATATGA--A- ---GTAGACA GCTTTGAGAC gorilla CAGAATGTGT TACTAAAATT ATATGA--A- ---GTAGACA GCTTTGAGAC orangutan ---------- ---------- ---------- ---------- ---------- gibbon CAGAATGTGT TACTAAAATT ATATGA--A- ---GTAGACA GCTTTGAGAC colobus_monkey CAGAATGTGT TACTAAAATG ATATGA--A- ---GTAGACA GCTTTGAGAC vervet ---------- ---------- ---------- ---------- ---------- baboon CAGAATGTGT TACTAAAATG ATATGA--A- ---GTAGACA GCTTTGAGAC macaque CAGAATGTGT TACTAAAATG ATATGA--A- ---GTAGACA GCTTTGAGAC dusky_titi CAGAATGTAT TACTAAAATT ATATGA--A- ---GT----A GCTTCAAGAC owl_monkey CAGAATGTGT TACTAAAATT ATATGA--A- ---GT----T GCTTCAAGAC squirrel_monkey CAGAATGTGA TACTAAAATT ATATGA--A- ---GT----A GCTTCAAGAC marmoset CAGAATGTGT TACTAAAATT ATACGA--A- ---GT----A GCTTCAAGAC galago CAGAACATGT TACTAAAATT ATATGG--A- ---GTAGACA GCTTTGGGAC mouse_lemur CAGAACATGT TACTAAAATT ATATGA--A- ---GTAGACA GCTTTGGGAC lemur CAGAACATGT TACTAAAATT ATATGA--A- ---GTAGACA GCTTTGGGAC rabbit CAGAAAGTGT TACTAAAATT ACATGG--A- ---GGAGACA GCTTTGGGAC st_squirrel CAGATTGTGT TACTAAAATT GTATGA--G- ---GTGGACA GCTTTGGTAC guinea_pig CAGAATATGT TACTAAAATT ACGTGA--G- ---GTAGACA GCTTTGGGAC rat CGCAATGTGT TGCTAAAATT ATATAA--A- ---GTAGACA GCTTCAGAGC mouse ---------- ---------- ---------- ---------- ---------- hedgehog TAGAATGTGT TTCTAAAATT ACATGA--G- ---GCAGAAA GCTTTGGGGC shrew CAGAACGTGT TGCTAAAATT ATATAA--A- ---GTACAAT GCTTTGGGAC rfbat CAGAGTGTGT TACTAAAATT ATATGA--A- ---GTAGACA GCTTTGGGAC cpbat ---------- ---------- ---------- ---------- ---------- cat CAGAATGTGT TACTAAAATT ATATGA--AG TAAGTAGAGA GCTTTGGGAC clouded_leopard CAGAATGTGT TACTAAAATT ATATGA--AG TAGGTAGAGA GCTCTGGGAC ferret CAGAAAGTGT TACTAAAATT ATATGA--AG TACGTAGAGA GCTTTGGGAC dog CAGAATGTGT TACTAAAATT ATATGA--A- ---GTAGAGA GTTTGGGGAC pig TGGAATGTGT TGCTAAAATT ATATGA--A- ---GTAGACA GCTTTGGCAC muntjak_indian CAGAATGTGT TACTAAAATT ATATGA--A- ---GCAGACA ACTTTTGGAC sheep CAGAATATGT TACTAAAATT ATATGA--A- ---GTAGACA ACTTTTGGAC cow CAGAATATGT TACTAAAATT ATATGA--A- ---GTAGACA ACTTTTGGAC horse ---------- ---------- ---------- ---------- ---------- armadillo TAGAGTGTGT TACTAAAATT ATATGA--A- ---GTAGTTA GCTTTGGGAC elephant CAGACTGCGT TACTAAAATT ACATGG--A- ---GTAGACA GCTTTGGGAC tenrec TGGACTGTGT TTCTAAAATT ACATGA--A- ---GTAGACA GCTTTGGGAC wallaby -AAGATTAGT TATTTCAGTT ACTCAG--T- ---CTCACCT CCTTTTGGTA monodelphis CCAGATTGGT TATTACAATT ACTCAG--T- ---TTGGCCT CTTTGGGGGA opossum CATGATTTGT TATTAAAATT ACTCAGAGT- ---TTGTCCT ATTTGGGGCG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- -------TTG TGCGCTTAT- -GA------A AAACATGTGT chimp ---------- -------TTG TGCGCTTAT- -GA------A AAACATGTGT gorilla ---------- -------TTG TGCGCTTAT- -GA------A AAACATGTGT orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- -------TTG TGCGCTTAT- -GA------A AAACATGTGT colobus_monkey ---------- -------TTT TGTGCTTAT- -GA------A AAACATGTGT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- -------TTT TGTGCTTAT- -GA------A AAAC--GTGT macaque ---------- -------TTT TGTGCTTAT- -GA------A AAACATGTGT dusky_titi ---------- -------TTG TGTACTTAT- -GA------A AAACATGTGT owl_monkey ---------- -------TTG TGCACTTAT- -GA------A AAACATGTGT squirrel_monkey ---------- -------TTG TGCACTTAT- -GA------A AAACATGTGT marmoset ---------- -------TTG TGCACTTAT- -GA------A AAACATATGT galago ---------- -------TTG TACACTTAT- -GA------A AAACGTGTGT mouse_lemur ---------- -------TTG TACGCTTAT- -GA------A AAACATGTGT lemur ---------- -------TTG TATGCTTAT- -GA------A AAACATGTGT rabbit ---------- -------TTG TGAGCTTAT- -AA------A AAACATGTGT st_squirrel ---------- -------TTG TGTGCTTAT- -GA------A AAACATGTGT guinea_pig ---------- -------TTG TGCGTTTAT- -GA------A AACCATGTGT rat ---------- -------TTG TGTACTTAT- -GA------A AACCATGTGT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- -------CT- -----TTAT- -GA------A AAGCATGTGT shrew ---------- -------TTG GGCACTTAT- -TA------A AAACAGGTGT rfbat ---------- -------TTG TGTGCTTAT- -GA------A AACCATGTGC cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- -------CTG TGTGCTTAT- -GA------A AAACATGCGT clouded_leopard ---------- -------CTG TGTGCTCAT- -GA------A AAACATGTGT ferret ---------- -------CTA TGTGCTTAT- -GA------A AAACATGTTT dog ---------- -------CTG TGTGCTTAT- -GA------A AAACATGTGT pig ---------- -------TTG TGTGCTTAT- -GA------A AAACATGTGT muntjak_indian ---------- -------TTG TATGCTTAT- -GA------A AAACACGTGT sheep ---------- -------TTG TGTGCTTAT- -GA------A AAACACGTGT cow ---------- -------TTG TGTGCTTAT- -GA------A AAACACGTGT horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- -------TTG CAAACATAT- -GA------A AACCATGTGT elephant ---------- -------TTG TGCATTTAC- -AA------A AAGCATGTGT tenrec ---------- -------TT- TGAACTTACC AGA------A AAGCATGTGT wallaby -------TTC TTTTCATTTG TATTACTGT- -CACCCTCCT CCGTATTTTT monodelphis ---------- TTCTCATTTA TGTTATTGT- -AA------T ATGTATTTTT opossum GGGGGAGTTC TTCTCATTTA TGTTTTTGT- -AA------T AGGTATTTTT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTGGATGTG GTCATTTT-- ---CTTT--A G--GACAAAA --GGAAAGGC chimp TTTGGATGTG GTCATTTT-- ---CTTT--A G--GACAAAA --GGAAAGGC gorilla TTTGGATGTG GTCATTTT-- ---CTTT--A G--GACAAAA --GGAAAGGC orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTTGGATGTG GTCATTTT-- ---CTTT--A G--AACAAAA --GGAAAGGC colobus_monkey TCTGGATGTG GTCATTTT-- ---CTTT--A G--AACAAAA --GGAAAGGC vervet ---------- ---------- ---------- ---------- ---------- baboon TTTGGATGTG GTCATTTT-- ---CTTT--A G--AACAAAA --GGAAAGGC macaque TTTGGATGTG GTCATTTT-- ---CTTT--A G--AACAAAA --GGAAAGGC dusky_titi TTTGGATGTG GTCATTTT-- ---CTTT--A G--AACAAAA --GGAAAGGC owl_monkey TTTGGATGTG GTCATTTT-- ---CTTT--A G--AACAAAA --GGAAAGGC squirrel_monkey TTTGGATGTG GTCATTTT-- ---CTTT--A G--AACAAAA --GGTAAGGC marmoset TTTGGATGTG GTCATTTT-- ---CTTT--A G--AACAAAA --GGAAAGGC galago TTTGGATGTG GTCATTTC-- ---CTTC--A G--AACAAAA ATGAAAGAGC mouse_lemur TTTGGATATG GTCATTTT-- ---CTTC--A G--AATAAAA A-GAAAGGGC lemur TTTGGATGTG GTCATTTT-- ---CTTC--A G--AACAAAA A-GGAAGGGC rabbit TTTGGATGTG GCCC------ ---CTTC--A G--AAAAAGA --GAAGGG-C st_squirrel TTTGGATATG GTCATTTTGT GCACATC--A G--GCA---- ---------- guinea_pig TTTGGATGTG TTCATTTT-- ---CATC--A G--ATAAAAA --GCAAAG-- rat TTT------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTTGGATATT GTAGTTTT-- ---ATTC--A A--AGAAAAA --GGAAGGGC shrew TT-G-ATGTG GCAATTTT-- ---CATA--A C--AAAAGGA --GGGAAGAC rfbat TTTGGATGTA GTAATTTT-- ---TTT---- C--AGAAAAA --GGAAGGGC cpbat ---------- ---------- ---------- ---------- ---------- cat TTTGGATGTG GTCATTTT-- ---CTTC--A GAGAAAAAAA --GGAAGGTC clouded_leopard TTTGGATGTG GTCATTTT-- ---CTTC--A GAGAAAAAAA --GGAAGGGC ferret TTTGGATATG GTCATTTT-- ---CTTC--A G--AAAAAAA --GGAAAGGC dog TTTGGATGTG GTCATTTT-- ---CTTC--A GA-AAAAAAA --GGAAGAGC pig TTTGGATGTG GTAATTTT-- ---CTTC--A G--AAAAGAA --GGAAGGGC muntjak_indian TTTGGATGTG GTAAAATT-- ---CTTA--A G--AAAA-AA --GGAAGGGC sheep TTTGAATGTG GTAAAATT-- ---CTTA--A G--AAAA-AA --GGAAGGGC cow TTTGGATGTG GTAAAATT-- ---CTTA--A G--AAAA-AA --GGAAGGGC horse ---------- ---------- ---------- ---------- ---------- armadillo TTTGGATGTG GTCATTTT-- ---CTTC--- A--GAAAAAA --GGAAGGGC elephant TTTGGATGTG GTAATTTT-- ---CTTC--A G--AAAAAAA --GGAAGGGC tenrec TTTGGATGTG GTAATCTT-- ---C------ A--GAAAAAA --GGAAGGGC wallaby CCT------- ---------- ---------- ------AAAA --AGATGAGC monodelphis CTTCCATAAG GTAAGGGC-- ---TATTAAA A--AAAAAAA --AGATGAGC opossum CTTACAGAAG GTAAAAAA-- ---TATT--G A--AAAAAAA --GGATGAGC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTCTTTCAA GGAACCAGTT ACAATGT--- ---------- ---------- chimp TTTCTTTCAA GGA--CAGTT ACAATGT--- ---------- ---------- gorilla TTTCTTTCAA GGA--CGGTT ACAATGT--- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTTCTTTCAA GGA--CAGTT ACAATGT--- ---------- ---------- colobus_monkey TTTCTTTCAA GGA--AAGTT ACAATGT--- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon TTTCTTTCAA GGA--AAGTT ACAATGT--- ---------- ---------- macaque TTTCTTTCAA GGA--AAGTT ACAATGT--- ---------- ---------- dusky_titi TTTCTTTCAA GGA--AAGTT ACAACAT--- ---------- ---------- owl_monkey TTTCTTTCAA GGA--AAGTT ACAATGT--- ---------- ---------- squirrel_monkey TTTCTTTCAA GGA--AAGTT ACAATGT--- ---------- ---------- marmoset TTTCTTTCAA GGA--AAGTT ACAATGT--- ---------- ---------- galago TTTCTTTCAA GGA--AGGTT GCAATGT--- ---------- ---------- mouse_lemur TTTCTTTCAA AGA--AAGTT ACAATGT--- ---------- ---------- lemur TTTCTTTCAA GGA--AAGTT ACAATGT--- ---------- ---------- rabbit TTTCTTTCAA GGA------- ACAATGT--- ---------- ---------- st_squirrel --TCTTCCAA GGA------- ACAAAGT--- ---------- ---------- guinea_pig --TTGTGCAG AGA------- ACCATGT--- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTTCGTCTAA AGA--AAGTT ACAGT----- ---------- ---------- shrew TTTACTTCAA AGA--AAGTT CCAGT-T--- ---------- ---------- rfbat TGTC-TGCAA GGA--AGGTT ACAATGT--- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat TTGCTTTCAA GGA--AAATT ACAGTGT--- ---------- ---------- clouded_leopard TTGCTTTCAA GGA--AAATT ACAGTGT--- ---------- ---------- ferret TTTCTTTCAA GGA--AAGTA ACAGTTT--- ---------- ---------- dog TTTCTTTCAA GGA--AAGTA ACAGTGT--- ---------- ---------- pig TTTCTTTCAA GGA--AAGTT AAAATGT--- ---------- ---------- muntjak_indian TTTCTTTCAT GAA--AAGTT ACAATGTGTT TTGTTTTGTT TTAAATTTTT sheep TTTCTTTCAT GGA--AAGTT ACAGTGTGTT TTGTTTT--- --AAATTTTT cow TTTCTCTCAT GGA--AAGTT ACAATGTGTT TTGTTTTGTT TTAAATTTTT horse ---------- ---------- ---------- ---------- ---------- armadillo TTTCTTTCAA GGA--AAGTT ACAGTGT--- ---------- ---------- elephant TTTCTTTCAA GGA--AAGGC ACAATGT--- ---------- ---------- tenrec CTTCTGTCAA GGA--CAGCT GCAATGT--- ---------- ---------- wallaby TC-------- -----TTGTT ACCCCAC--- ---------- ---------- monodelphis TC-------- -----TTATT ACCCCAC--- ---------- ---------- opossum TC-------- -----TGGTT ACCCCAC--- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- ---------- ---------- ---GGTTTTG ATT------- chimp ---------- ---------- ---------- ---GGTTTTG ATT------- gorilla ---------- ---------- ---------- ---GGTTTCG ATT------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---GGTTTTG ATT------- colobus_monkey ---------- ---------- ---------- ---AGTTTTG ATT------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---GGTTTTG ATT------- macaque ---------- ---------- ---------- ---GGTTTTG ATT------- dusky_titi ---------- ---------- ---------- ---GGTTTTG ATT------- owl_monkey ---------- ---------- ---------- ---GGTTTTG ATT------- squirrel_monkey ---------- ---------- ---------- ---GGTTTTG ATT------- marmoset ---------- ---------- ---------- ---GGTTTTG ATT------- galago ---------- ---------- ---------- ---GGTTTTG A-T------- mouse_lemur ---------- ---------- ---------- ---GGTTTTG ATT------- lemur ---------- ---------- ---------- ---GGTTTTG ATT------- rabbit ---------- ---------- ---------- ---GGTTTTG ATA------- st_squirrel ---------- ---------- ---------- ---GGTTTAG GTA------- guinea_pig ---------- ---------- ---------- ---GGTTTTG GTG------- rat ---------- ---------- ---------- ---------- --G------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- -TG------- shrew ---------- ---------- ---------- ---TGTTTCA ATA------- rfbat ---------- ---------- ---------- ---GGTTGTG AGA------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---GGTTTAG ATA------- clouded_leopard ---------- ---------- ---------- ---GGTTTAG ATA------- ferret ---------- ---------- ---------- ---GGTTTGG ATA------- dog ---------- ---------- ---------- ---GGTTTAG GTT------- pig ---------- ---------- ---------- ---GGTTTTG ATA------- muntjak_indian TAATGGAAGG ATAGTTGCTT TACAGAATTT TGCGG-TTTG ATA------- sheep TAATCAAAGG ATAGTTGCTT TACAGAATTT CGTGGTTTTG ATA------- cow TAATCGAAGG ATAGTTGCTT TACAGAATTT TGTGGTTTTG ATA------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---GGTTTTG ATA------- elephant ---------- ---------- ---------- ---GGTTTTG ATA------- tenrec ---------- ---------- ---------- ---GGTTCTG ACAAAAAGAT wallaby ---------- ---------- ---------- ---GGTTTTG AGG------- monodelphis ---------- ---------- ---------- ---AGTTTTG AGA------- opossum ---------- ---------- ---------- ---AGTTTTG AGA------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- --T------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- --------AA GATTTGTTTG A------AAG TTATCTC--- chimp ---------- --------AA GATTTGTTTG A------AAG TTATCTC--- gorilla ---------- --------AA GATTTGTTTG A------AAG TTATCTC--- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- --------AA GATTTGTTTG A------AAG TTATATC--- colobus_monkey ---------- --------AA GATTTGTTTG A------AAG TTATATC--- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- --------AA GATTTGTTTG A------AAG TTATATC--- macaque ---------- --------AA GATTTGTTTG A------AAG TTATATC--- dusky_titi ---------- --------AA GATTTGCTTG A------AAG TTATATC--- owl_monkey ---------- --------AA GATTTGCTTG A------AAG TTTTATC--- squirrel_monkey ---------- --------AA GATTTGCTTG A------AAG TTTTATC--- marmoset ---------- --------AA GATTTGCTTG A------AAG TTTTATT--- galago -TGTAATA-C TCATAA--AA GATTTGTTTG A------AAG TTTAATC--- mouse_lemur -TGTAATA-C TCATAA--AA GATTTGTTTG A------AAG TTATATC--- lemur -TGTAATA-C TCATAA--AA GATTTGTTTG A------AAG TTTTATC--- rabbit -TGTGATC-C TCATGA--AA GATTTGTTTG A------AAG TTATATC--- st_squirrel -AGTGATA-T TCATAC--AA GATTTGTTTG A------AAG TTATATC--- guinea_pig -CGTGCCA-C TCACAA--AA GATTTGTTTG A------AAG CTACATC--- rat -TGTGAAG-C TCATAA--AA TATTTGTTTG A------GAG TTCCATC--- mouse ---------- ---------- ---------- ---------- ---------- hedgehog -TGTAAGA-A CTATAA--AA GATTTATTTG A------ACA TT-------- shrew -TGTGGCA-C TCAAAATTAT GATTTGTTTG ACAGAGAGCA GT-------- rfbat -TGTGAGA-C TTATAA--AA GATTTGTTTG A------AAG TT-------- cpbat ---------- ---------- ---------- ---------- ---------- cat -TGTGATA-C TCATAA--AA GATTTGTTTG C------AAC TT-------- clouded_leopard -TGTGATA-C TCATAA--AA GATTTGTTTG A------AAC TT-------- ferret -TGTGATA-C TCATAA--AA GATTTGTTTG A------AA- TT-------- dog -TGTGAGA-C TCATAA--AA GAGTTGTTTG A------AAG TT-------- pig -TGTGATA-C TCATTA--AA GGTTTGTTTG A------AAG TT-------- muntjak_indian -TGTGATA-C TCATGA--AA GATTTGTTTG A------AAG TT-------- sheep -TGTGATA-C CCATGA--AA GATCTGTTTG A------AAG TT-------- cow -TGTGATA-C TCATGA--AA GATTTGTTTG A------AAG TT-------- horse ---------- ---------- ---------- ---------- ---------- armadillo -TGTGCTACC TCGTAA--AG GATTTGTTTG A------AAG TTGTATC--- elephant -TGTAATGTC TCGTAA--AA GATTTGTTTG A------AAG TCATATC--- tenrec TTTTTTTTCC TCATAA--AA GATTTGTTTG A------AAG TTACATT--- wallaby -T-------- ---------- ---------- ---------- --GTATTCTT monodelphis -T-------- ---------- ---------- ---------- --GTATTTTT opossum -T-------- ---------- ---------- ---------- --TTATCTTT platypus ---------- ---------- ---------- ---------- ---------- chicken -TTCTGC--- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- ---------- ---------A ACACAAGTGG TAAGTGGAAT chimp ---------- ---------- ---------A ACACAAGTGG TAAGTGGAAT gorilla ---------- ---------- ---------A ACACAAGTGG TAAGTGGAAT orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- -----AACAA ACACAAGTGG TAAGTGGAAT colobus_monkey ---------- ---------- ---------A ACACAAGTGA TAAGTGGAAT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------A ACACAAGTGG TAAGTGGAAT macaque ---------- ---------- ---------A ACACAAGTGG TAAGTGGAAT dusky_titi ---------- ---------- ---------A ACACAAGTGG TAAGTGGAAT owl_monkey ---------- ---------- ---------A ACACAAGCGG TAAGTGGAAT squirrel_monkey ---------- ---------- ---------A ACACAAGTGG TAAGTGGAAT marmoset ---------- ---------- ---------A AAACAAGTGG TAAGTGGCAT galago ---------- ---------- ---------A ACACAAGTAG TAAGTGGAAT mouse_lemur ---------- ---------- ---------A ACACAAGTAG AGAGTGGAAT lemur ---------- ---------- ---------A ACACAAGTAG TGAGCGGAAT rabbit ---------- ---------- ---------A ACAGGAGTGG CAAGTGGaat st_squirrel ---------- ---------- ---------A GCAGAAATGG TAAGTGG-AT guinea_pig ---------- ---------- ---------A ACAGGAACGG TAAGTGGAAT rat ---------- ---------- ---------A ACAAGAGCGT TAAGTGGAAT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- TTATTAGAAT shrew ---------- ---------- ---------- ---------- TAAGTGAAAT rfbat ---------- ---------- ---------- ---------- GAAGTGGAAT cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- TTAGTAGAAT clouded_leopard ---------- ---------- ---------- ---------- TTAGTAGAAT ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- TAAGTGGAAT muntjak_indian ---------- ---------- ---------- ---------- TAAATGGAAT sheep ---------- ---------- ---------- ---------- TAAATTGAAT cow ---------- ---------- ---------- ---------- TAAATGGAAT horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------A ACTGAAGCAG TAAATGGaat elephant ---------- ---------- ---------A ACAGGAGTGA TATGTGGAAT tenrec ---------- ---------- ---------A ACAGGAATGA TATGTGGaat wallaby TCTCTTCCAC TCC----CTC CCCAGAAAAA A---TACTTT TTAAAAGCTA monodelphis CTCTTTCTTC TCCTTGACAC CATTTAAAAA ACCCTACATT TGA-TAGTTT opossum CTCTTTCTTC CCCTCGACTC CATTAAAAAA ACACTACATT TTAGTAGTTT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- -ATAAAGGAA ACAGTGAGAT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TAAAAGTGCA ATTTATTGAA TTTTTAT--- ----GTTTT- ---------- chimp TAAAAGTGCA ATTT------ ------T--- ----GTTTT- ---------- gorilla TAAAAGTGCA ATTT------ ------T--- ----GTTTT- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TAAAAGTGCA ATTT------ ------T--- ----GTTTT- ---------- colobus_monkey TAAAAGTGCA ATTT------ ------T--- ----GTTTT- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon TAAAACTGCA ATTT------ ------T--- ----GTTTT- ---------- macaque TAAAACTGCA ATTT------ ------T--- ----GTTTT- ---------- dusky_titi TAAAAGTGCA ATTT------ ------T--- ----GTTTT- ---------- owl_monkey TAAAAGTGCA AGTT------ ------T--- ----GTTTT- ---------- squirrel_monkey TAAAAGTGCA AGTT------ ------T--- ----GTTTT- ---------- marmoset TAAAAGTGCA AGTT------ ------T--- ----GTTTT- ---------- galago TAGAAGTACA A-TT------ ------T--- ----GTTTT- ---------- mouse_lemur TAAAAGTATA ATTT------ ------T--- ----GTTTT- ---------- lemur TAAAAGTGTA ATTT------ ------T--- ----GTTTT- ---------- rabbit taaaaatgta attt------ ------T--- ----ATTTT- ---------- st_squirrel TAAAAATATA ATGT------ ------T--- ------TTT- ---------- guinea_pig TAAAAGTGTG ATTT------ ------T--- -------TT- ---------- rat TAAAAGTGTG ATTT------ ------T--- ------CCT- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog GGAAAGttta attt------ ------T--- ----CATTT- ---------- shrew CAGAAGAGCA ATTC------ ------T--- ----TTTTT- ---------- rfbat TAAAAGTGCA ATTT------ ------T--- ----GATTTT TTGTTGTTGT cpbat ---------- ---------- ---------- ---------- ---------- cat TAGAAGGACA GTT------- ------T--- ----GTTTT- ---------- clouded_leopard TAGAAGGACA GTT------- ------T--- ----GTTTT- ---------- ferret ---------- ---------- ------T--- ----GTTTT- ---------- dog ---------- ---------- ------T--- ----GTTTT- ---------- pig TAAAGGTGta ---------- ------T--- ----GTTTT- ---------- muntjak_indian TAAAGTTGTA GTC------- ------T--- ----GTTTT- ---------- sheep TAAAGTTGTG GTC------- ------T--- ----GTTTT- ---------- cow TAAAGTTGTG GTC------- ------T--- ----GTTTT- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo t-----tata attt------ ------T--- ----GTTTT- ---------- elephant TGAAAGTATA ATTT------ ------G--- -----TTTT- ---------- tenrec taaaagtata attt------ ------T--- ----CTTTT- ---------- wallaby TAAATGGAAA ATT------- ------T--G TCTTGTTTT- ---------- monodelphis TAAATGTAAA ATT------- ------T--C TCCTATTTT- ---------- opossum TAAATGTAAA ATT------- ------T--C TCCTGTTTT- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken CATTCATGCA GCTT------ ------T--- ----CTTGA- ---------- fugu ---------- ---------- ------TCTC TGTCATGTG- ---------- tetra ---------- ---------- ------TGGC TCTCGTGTG- ---------- human ---------- C-TTT-TTAA CATATTGTTT TG--AA---- ---------- chimp ---------- C-TTT-TTAA CATAT--TTT TG--AA---- ---------- gorilla ---------- C-TTT-TTAA CATAT--TTT TG--AA---- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- C-TTT-TTAA CATAT--TTT TG--AA---- ---------- colobus_monkey ---------- C-TTT-TTAA CATAT--TTT TG--AA---- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- C-TTT-TTAA CATAT--TTT TG--AA---- ---------- macaque ---------- C-TTT-TTAA CATAT--TTT TG--AA---- ---------- dusky_titi ---------- C-TTT-TTAA CATAT--TTT TG--GA---- ---------- owl_monkey ---------- C-TTT-TTAA CATAT--TTT TG--GA---- ---------- squirrel_monkey ---------- C-TTT-TTAA CATAT--TTT TG--GA---- ---------- marmoset ---------- C-TTT-TTAA CATAT--TTT TA--GA---- ---------- galago ---------- C-TCC-TTAA CATAT--TTT TG--AA---- ---------- mouse_lemur ---------- C-TCT-TTAA CATAT--TTT TA--AA---- ---------- lemur ---------- C-TCT-TTAA CATAT--TTT TA--AA---- ---------- rabbit ---------- T-TCT-TTAA CATAA--TTT TG--AA---- ---------- st_squirrel ---------- CTTCT-TTAA TATAA--TTT TG--AA---- ---------- guinea_pig ---------- C-TCT-TCAA CATAA--TTT TG--AA---- ---------- rat ---------- C-CCC-TTAA CATGA--TCT CG--AA---- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------A T-TCT-TTAA TATAA--TTT TA--GGCATT AAAACTAGTT shrew ---------T T-TCT-TTGA CATAA--TTT GG--AA---- ---------- rfbat TTTTGTTTAT T-TTT-TTAA CATAA--TCT GG--AA---- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- C-TAC-TTAA CATAA--TTT TG--AA---- ---------- clouded_leopard ---------- C-TAC-TTAA CATAA--TTT TG--AA---- ---------- ferret ---------- C-TCC-TTAA CATAA--TTC TA--AA---- ---------- dog ---------- C-TCC-TTAA CATAA--TTT TA--AA---- ---------- pig ---------- C-TCT-TTAA CATAA--ATT TG--CA---- ---------- muntjak_indian ---------- T-TCT-TTAA CATAA--TTT TA--AA---- ---------- sheep ---------- C-TCT-TTAA CATAA--CTT TG--AA---- ---------- cow ---------- C-TGT-TTAA CATAA--TTT TG--AA---- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- C-TCT-TTAA CATGA--TTT TG--AA---- ---------- elephant ---------- C-TCT-TTAA CATAA--TTT GG---A---- ---------- tenrec ---------- C-TCT-TCAA CATAA--TTT TG--CA---- ---------- wallaby ---------- C-TCT-TGAA CATAA--CTT TTTAAA---- ---------- monodelphis ---------- C-TTT-TGAA CATAA--CTT TT--AA---- ---------- opossum ---------- C-TTT-TGAA CATAA--CTT TT--AA---- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- T-CTT-TAAA CATAA--TAT GT--AA---- ---------- fugu ---------- C-TCTGCTTC CATGC--GTG CG--CC---- ---------- tetra ---------- C-TCTGTTGA CATGT--GTA CA--GC---- ---------- human -ACTG----- -GGTGAAAAC ------TA-- --AAAA-TTC CCTACCATAA chimp -ACTG----- -GGTGAAAAC ------TA-- --AAAA-TTC CCTACCATAA gorilla -A-------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon -ACTG----- -GGTGAAAAC ------TA-- --AAAA-TTC CCTACCATAA colobus_monkey -ACTG----- -AGTGGAAAC ------TG-- --AAAA-TTC CCTACCATAA vervet ---------- ---------- ---------- ---------- ---------- baboon -ACTG----- -AGTGAAAAC ------TG-- --AAAA-TTC CCTACCATAA macaque -ACTG----- -AGTGAAAAC ------TG-- --AAAA-TTC CCTACCATAA dusky_titi -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTC CCTACCATAA owl_monkey -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTC CCTACCATAA squirrel_monkey -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTC CCTACCATAA marmoset -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTC CCTACCATAA galago -ACTG----- -GCTGAAAAT ------TA-- --AAAG-TTC CCCACCATAA mouse_lemur -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTC CCCACCATAA lemur -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTC CTCACCATAA rabbit -ACTG----- -GCTGAAAAC ------TA-- --AGAA-TTC CCCACCATAA st_squirrel -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTC CCCACCATAA guinea_pig -ACTG----- -GCTAAAAAC ------AA-- --GAAC-TTC TCCACCATAA rat -ACTG----- -GCAGAAAAC ------TG-- --AGGA-CTC CTGACCATAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog TACTA----- -GCT-AAACT ------AA-- --AAAT-TTT CTTACCATAA shrew -ACTG----- -GCC-AGATC ------TATA TGAAAA-GTC CCCACTGTTA rfbat -ACTG----- -GCT-GAAAG ------TA-- --AAAA-TTC CACACCATAA cpbat ---------- ---------- ---------- ---------- ---------- cat -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTC CACACCATAA clouded_leopard -ACTG----- -ACTGAAAAC ------TA-- --AAAA-TTC CACACCATAA ferret -ACTG----- -GCTGAAAAC ------TA-- --AAAA-TTT CCCACCATAA dog -ACTG----- -GC-GAAAAC ------TA-- --AAAA-TTT CCCACCATAA pig -ACTA----- -GCTGAAAAC ------TG-- --AAAA-TTC CCCACCATAA muntjak_indian -ACTG----- -TCTGAAAAC ------TG-- --AAAA-TTC CCCACCATAA sheep -ACTG----- -GCTGAAAAC ------TG-- --AAAA-TTC CCCACCATAA cow -ACTG----- -GCTGAAAAC ------TG-- --AAAA-TTC CCCACCATAA horse ---------- ---------- ---------- ---------- ---------- armadillo -ACTT----- -ACTGAAAAC ------TA-- --AAAA-TTC CCCACCATAA elephant -ACTG----- -GCT-AAAAC ------TA-- --AAAA-TTC CCCACCATAA tenrec -ACTG----- -ACTGAAAAC ------TA-- --AAAA-TTC CCCACCATAA wallaby -ACAG----- -ACAGAACCC ---------- -------TGC TCATATAAAA monodelphis -ATGGTTTTG AACAGAAACC GCCCCCCA-- --AAAAATGC TCATCCAAAA opossum -ACAG----- ---AAAAACC ACCTCCCA-- --AAAA-TGC TCATCCAAAA platypus ---------- ---------- ---------- ---------- ---------- chicken -A-------- ---------- ---------- ---------- ---------- fugu -G-------- ---------- ---------- ---------- ---------- tetra -A-------- ---------- ---------- ---------- ---------- human ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC chimp ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC colobus_monkey ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC vervet ---------- ---------- ---------- ---------- ---------- baboon ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC macaque ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC dusky_titi ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC owl_monkey ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC squirrel_monkey ATGGATTAGT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC marmoset ATGGATTAAT ACTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC galago ATGGATTAAT ATTTG----- -TGTTTAATT TTTCCATATA TGTGTATCCC mouse_lemur ATGGATTAAT ATTTG----- -TGTTGAATT TTTCCATATA TGTATATCCC lemur ATGGATTAAT ATTTG----- -TGTTGAATT TTTCCACGTA TGTATATCCC rabbit ATGGATTAAT AGTTG----- -CATTGAATT CTTCCATATA TGTATATCCC st_squirrel ATGGATTAAT ACTTG----- -TGTTGGATT CTTCCATATA TGTATATCCC guinea_pig ATGGATTAGT ACTGG----- -TGTTGTATT CTTCCATATA TGTGTATCCC rat ATGGAGTAAC CTTTG----- -TGTTGAATT CTCCCATATA TGTATGTCCC mouse ---------- ---------- ---------- ---------- ---------- hedgehog ATGGATTGAT GCTTG----- -TGTTGACTT CGCCCATATA TGTATATCCC shrew ATGGATTAAT GC--G----- -GGTTGAATT CTTCCATATA TGTCTATCCC rfbat ATGGATTAAT GCCTG----- -TGTTGAATT CTTCCATATA TGTGTATCCT cpbat ---------- ---------- ---------- ---------- ---------- cat ATGGATTAAT CCTTG----- -TGTTGAATT CTTCCATATA AGTATATCCC clouded_leopard ATGGATTAAT CCTTG----- -TGTTGAATT CTTCCATATA AGTATATCCC ferret ATGGATTAAT CCTTG----- -TGTGGAATC CTTCCTTATA AGTATATCCT dog ATGGATTAAT CCTTG----- -TGTGGAATC CTTCCATATA AGTATATCCC pig ATGGATTAAT GCTTG----- -TTTTGAATT CTTCCATATA TGTATATCTC muntjak_indian ATGGATTAAT GCTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC sheep ATGGATTAAT GCCTG----- -TGTTGAATT CTTCCATATA TGTATATCCC cow ATGGATTAAT GCTTG----- -TGTTGAATT CTTCCATATA TGTATATCCC horse ---------- ---------- ---------- ---------- ---------- armadillo ATGGTTTAAC ACTTG----- -TACTGAATT CTTCCATATA TGTGTATCCC elephant ATGGATTAAT GCTTG----- -TGTTGAATT CTTCCATATA TGTAAATCCT tenrec ATGGATTAAT TCTTG----- -TGTTGAATT CTTCCATATA TGTAAATCTC wallaby ATGGATTAAT GCATGTGCCT CTGTCAGATT CATCCATATA TGCACATACT monodelphis ATGGATTAAT GCATGCGCTT CTGTCAGATT TATCCATATA TGTATATACT opossum ATGGATTAGT GCATGCGCTT CTGTCAGAGT CATCCATATA TGTATATACT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGTTACA-AA AGGGCAGCTT CCAACCC-TT TTAAATTA-T GGTTTGTAGC chimp TGTTAGA-AA AGGGCAGCTT CCAACCC-TT TTAAATTA-T GGTTTGTAGC gorilla --------AA AGGGCAGCTT CCAACCC-TT TTAAATTA-T GGTTTGTAGC orangutan ---------- ---------- ---------- ---------- ---------- gibbon TGTTACA-AA AGGGCAGCGT CCAACCC-TT TTAAATTA-T GGTTTGTAGC colobus_monkey TGTTATA-AA AGGGCAGCTT CCAACCC-TT TTAAATTA-T GGTTTGTAGC vervet ---------- ---------- ---------- ---------- ---------- baboon TGTTATA-AA AGGGCAGCTT CCAACCC-TT TTAAATTA-T GGTTTGTAGC macaque TGTTATA-AA AGGGCAGCTT CCAACCC-TT TAAAATTA-T GGTTTGTAGC dusky_titi TGTTAGA-AA AGGGCAGCTT CCAACTC-TT TTAAATTA-T GGTTTGTAGC owl_monkey TGTTAGA-AA AGGGCAGCTT CCAACTC-TT TTAAATTA-T GGTTTGCAGC squirrel_monkey TGTTAGA-AA AGGGCAGCTT CCAACTC-TT TTGAATTA-T GGTTTGTAGC marmoset TGTTAGA-AA AGGGCAGCTT CCAACTC-TT TTAAATTA-T GGTTTGTAGC galago TATTAGA-AA AGGG------ -CAGCTC-TT TTGAATTA-T GGTTTGTAGT mouse_lemur TGTTATA-AA AGGGCAGCTT CCAGCTC-TT TTAAATTA-T GGTTTGTAGC lemur TGTTATA-AA AGGGCAGCTT CCAGCTC-TT TTAAATTA-T GGTTTGTAGC rabbit TGTTATA-AA AGGGCAGCCT CCAGCCC-TT TTAAATTA-T GGTTTGTAGC st_squirrel TGTTACA-AA AGGGCAGCTT CCAGCCT-TT TTAAATTA-C GGTTTGTAAC guinea_pig TGTTACA-AA AGGGCAGTTT CCAGAG--CT TTAAGTTA-T GTTTCATAGC rat TATTACA-AA AGGGCAGCTT CCAGCC--TT TTAAATTA-T GGTTTGTAGC mouse ---------- ---------- ---------- ---------- ---------- hedgehog TGTTATA-AA AGGATAGCTT CCAATC--TT TTAAATTA-T GGATTGTTAC shrew TGTTATAGAA AGGGCAGCTT CCAAG---TC TTAAATTG-C AGTTTATAGC rfbat TGTTATA-AA AGGGCAGCTT CCAACCCTCT TAAAATTA-T GGTCTGTAGC cpbat ---------- ---------- ---------- ---------- ---------- cat TCTTATA-AA CGGGCAGCTT CCAGCCC-TT TTAAAATA-T GGTTTGTAGT clouded_leopard TCTTATA-AA CGGGCAGCTT CCAGCCC-TT TTAAAATA-T GGTTTGTAGT ferret TGTTATA-AA ACGGCAGCTT CCAACCC-TT TTAAAATA-T GGTTTGTAGC dog TGTTATA-AA AGGGCAGCTT CCAGCCC-TT TTAAAATA-T GGTTTGTAGC pig TGTTGTA-AA AGGGCAGCTT CCAACCC-TT TTAAATTATT GGTTTGTAAC muntjak_indian TGTTGTA-AA AGGATAGCTT CCAACCC-TT TTAAATTATT CGTTTATAGC sheep TGTTGTA-AA AGGGCAGCTT CCAACCC-TT TTAAATTATT CGTTTATAGC cow TGTTATA-AA AGGGCAGCTT CCAACCC-TT TTAAATTATT CGTTTATAGC horse ---------- ---------- ---------- ---------- ---------- armadillo TGTTACA-AG AGGGCAGCTT CCAACCC-TT TGAAATTA-T GGTTTGTAGC elephant TGTTACA-GA AGGGCAGCTT CCAACCG-TT TGAAATGA-T GGTTTGTAGC tenrec TGTTATA-AA AGAGCAGCTT CCAGCCC-TT TGAAATTA-T GGTTTGTAGC wallaby TGTTTC-CAA AGACCATCTC CTAACGA-TT TAAAATTA-T AGTTTGTAAT monodelphis TCTTAC-CAA AGACAATCTC CTAACTA-TT TAAAATTA-T AGCTTGTAAC opossum TGTTAC-CTA ACACCATTTC CTAACTA-TT TAAAATTA-T AGCTTGTAAC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATTAAATCAC TGTGAATGCT GGCAGCATGT CAAAGCACTC T--------- chimp ATTAAATCAC TGTGAATGCT GGCAGCATGT CAAAGCACTC T--------- gorilla ATTAAATCAC TGTGAATGCT GGCAGCATGT CAAAGCACTC T--------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ATTAAATCAC CGTGAATGCT GGCAGCATGT CAAAGCACTC T--------- colobus_monkey ATTAAATCAC TGTGAATGCT GGCAGCATGT CAAAGCACTC T--------- vervet ---------- ---------- ---------- ---------- ---------- baboon ATTAAATCAC TGCGAATGCT GGCAGCATGT CAAAGCACTC T--------- macaque ATTAAATCAC TGCGAATGCT GGCAGCATGT CAAAGCACTC T--------- dusky_titi ATTAAATCAC TATGAATGCT GGCAGCATGT CAAAGCACTC T--------- owl_monkey ATTAAATCAC TATGAATGCT GGCAGCATGT CAAAGCACTC T--------- squirrel_monkey ATTAAATCAC TGTGAATGCT GGCAGCATGT CAAAGCACTC T--------- marmoset ATTAAATCAC TATGAATGCT GGCAGCATGT CAAAGCATTT T--------- galago ATTAAATAAC TGTGACTGGT GGCAGCTTGT CAAAACACTC C--------- mouse_lemur ATTAAATCAT TGTGAATTCT GGCAACATGT CAAATCACTC C--------- lemur ATTAAATCAC TGTGAATGCT GGCAGCATGT CAAAGCACTC C--------- rabbit ATTAAATCAC TACAAATGCT GGCAGCATGT CAGAGAACTC C--------- st_squirrel ATTAAATCAC TATGAGTGCT GGCAGCAAGT CAGAGCACTC T--------- guinea_pig ATTAAATCAC TGAGATTGTT GACAGAATG- GCAGGCACCC C--------- rat ATTAGATCAC CGGGACAGCT GGTGGTGTGT GGGAGCTCTC C--------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ATTAAATCAC TGTGAATGCT GGCAGCAAGT CAAAGCACTC T--------- shrew ATTAAATCAC --TAAATGCT GGCCACATGT CAAAACACTG C--------- rfbat CTTAAATCAC TGTGAATGCT GGCAGCGGGT CAGAGCACTC C--------- cpbat ---------- ---------- ---------- ---------- ---------- cat ATTAAATCAC TGTGAGTGCT GGCAGCATGT CAGAGCACTC C--------- clouded_leopard ATTAAATCAT TGTGAGTGCT GGCAGCATGT CAGAGCACTC C--------- ferret TTTAAATCTC TGTGAATGCT GGCAGCATGT CAAAGCACTC C--------- dog ATTAAATCAC TGTGAATGCT GGCAGCATGT CAGAGCACTC T--------- pig TTTAAATTAC TGTGAATGCT GGCAGCATGT CAGAGCACTC T--------- muntjak_indian ATTAAATCAC TATGACTGCT GGCGGTATGT CAGAGCACTC C--------- sheep ATTAAATCAC TGTGACTGCT GGCGGTATGT CAGAGCACTC C--------- cow ATTAAATCAC TATGACTGCT GGCGGTATGT CAGAGCACTC C--------- horse ---------- ---------- ---------- ---------- ---------- armadillo ATTAAATCAC TGTGAATGCT GGCAGCATGT CAGAATTCTC C--------- elephant AGTAAATCAC CGTGAATGTT GGCAGCATGT CAGAGCACTC C--------- tenrec ATTAAATCAC AGTGAATGCT GGCAGCATGT CAGA-CACTA C--------- wallaby CTTAAACCAC TGTCACTGTT GGCAGCATTT CAAGGATCTC CTTTCTGCAA monodelphis CTTAAACCAT TGTTAATGTT GGCAGCAATT CAAGGATCTC CTTTTTATGA opossum CTTAAACCAT TGTTAATGTT GGCAGCATTT CAAGGATCTC CTTTTTATGA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -----AGTTT CT-AC-TGCT TGCCTTGG-A AAA------- ---------- chimp -----AGTTT CT-AC-TGCT TGCCTTGG-A AAA------- ---------- gorilla -----AGTTT CT-AC-TGCT TGCCTTGG-A AAA------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon -----ACTTT CT-AC-TGCT TGCCTTGG-A AAA------- ---------- colobus_monkey -----AGTTT CT-AC-TACT TGCCTTGG-A AAA------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon -----AGTTT CT-AC-TACT TGCCTTGG-A AAA------- ---------- macaque -----AGTTT CT-AC-TACT TGCCTTGG-A AAA------- ---------- dusky_titi -----AGTTT CT-AC-TACT TGCCTTGG-A AAA------- ---------- owl_monkey -----AGTTT CT-AC-TACT TGCCCTGGAA AAA------- ---------- squirrel_monkey -----AGTTT CT-AC-TGCT TGCCCTGG-A AAA------- ---------- marmoset -----AGTTT CT-AC-TACT TGCCCTGG-A AAA------- ---------- galago -----AGTTT CT-AC-TACT TGCCTTAG-A AAA------- ---------- mouse_lemur -----AGTTT CT-AC-TATT TGCCTTGG-A AAA------- ---------- lemur -----CGTTT CT-AC-TACT TGCCTTGG-A AAA------- ---------- rabbit -----AGTTC CT-GC-TACT CGCCTTGG-A AAA------- ---------- st_squirrel -----GGTTT CT-GC-TATT TGGCCTGG-A AAA------- ---------- guinea_pig -----AGTTT CT-GC-TACT TGCTGTGA-G A--------- ---------- rat -----AGGTT CC-GC-TACT TGCAATGG-A AAA------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog -----AGCTG CT-AC-TACT TTCTTTGG-A AAA------- ---------- shrew -----AATTC CT-ACTTAGT TGCCTTGG-A AAA------- ---------- rfbat -----AGCTG CT-AC-TACT TGCCTTGT-A AAA------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat -----AGTTG CT-AC-TACT TGCCTTGT-A AAA------- ---------- clouded_leopard -----AGTTG CT-AC-TACT TGCCTTGT-A AAA------- ---------- ferret -----AGTTG TT-GC-TACT TGCCTTGT-A AAA------- ---------- dog -----AGTTG CT-AC-TACT TGCCTTGT-A AAA------- ---------- pig -----AGTTG CT-AC-TGCT TGCCTTGG-A AAA------- ---------- muntjak_indian -----AGTTG CT-AC-TACT TGCCTTGG-A AAA------- ---------- sheep -----AGTTG CT-AC-TACT TGCCTTGG-A AAA------- ---------- cow -----AGTTG CT-AC-TACT TGCCTTGG-A AAA------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo -----AGTTG CTCAC-TACT TGCCTTGG-A AA-------- ---------- elephant -----ACTTG CT-AC-TACT TGCCTTGG-A AAA------- ---------- tenrec -----ACTTG CT-AC-TACT TGCCTTGG-A AA-------- ---------- wallaby ACTGAAGTTC CA-TG-TACT TGTCTCAG-A AAAGCTGCTG CAGAA---GT monodelphis ACTGAAGCTC CA-TT-TACT TCTCTCAG-A AAAGCTATTG TAGAAGTTGT opossum ACTGAAGCTC CA-TT-TACT TCTCTCAG-A AAAGGGATTG TAGAA---GT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT chimp ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT gorilla ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT colobus_monkey ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT macaque ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT dusky_titi ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT owl_monkey ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT squirrel_monkey ---------- AT-A------ -----GTTAA GT---TTTAC AAAT-AATTT marmoset ---------- AT-A------ -----G-TAA GT---TTTAC AAAT-AATTT galago ---------- AT-A------ -----A-CAG TT---TTCAG AAAT-A---- mouse_lemur ---------- AT-A------ -----A-TAA TT---TTCAC AAAT-A---- lemur ---------- AT-A------ -----A-TGA TT---TTCAC AAAT-A---- rabbit ---------- AT-G------ -----A-TAA TT---TTTAT GAAT-AATTT st_squirrel ---------- AT-A------ -----A-TAA TT---TTTAT GAAT-A---- guinea_pig ---------- ---A------ -----A-TGA TT---TTTAT GAAT-A---- rat ---------- AT-A------ -----A-TAA TT---TGTAT GTATCA---- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- GT-A------ -----A-TC- -----TTTAT AAAT-AATTT shrew ---------- AT-A------ -----A-TAA TT--GTTTAT AAAG-A---- rfbat ---------- AT-A------ -----A-TAA TT---TTTAC AAAT-AATTT cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- AC-aaaaata tatata-tat at---tttaC AAAT-AATTT clouded_leopard ---------- ACaaaaaaaa tatata-tat at---tttaC AAAT-AATTT ferret ---------- AT-A------ -----A-TAT TT---TTTAC AAAG-AATTT dog ---------- AT-A------ -----A-CAT TT---TTCGC AAAT-AATTT pig ---------- AT-A------ -----A-TAA TT---TTTAC AAAT-A---- muntjak_indian ---------- AT-A------ -----A-TAA TT---TTTAC AAAT-AATTT sheep ---------- AT-A------ -----A-TAA TT---TTTAC AAAT-AATTT cow ---------- AT-A------ -----A-TAA TT---TTTAC AAAT-AATTT horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---A------ -----A-TAA TT---TTTAC AAAT-A---- elephant ---------- AC-A------ -----G-TAA TT---TTTAC AAAT-A---- tenrec ---------- ---A------ -----G-CCA TT---TTTAC AAGT-A---- wallaby TGTCTTTTTG AT-A------ -----C-TAA CT----GTAA AACA-G---- monodelphis TGTCTTTTTG AT-A------ -----C-TAA CTAACCGTAA AACA-G---- opossum TGTCTTTTTG AC-A------ -----C-TAA CTAACTGTAA AACA-G---- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTAAAAGT-- AAA------- ---ATGT-TT TAGTTTAAA- -TGTGTGCTG chimp CTAAAAGT-- AAA------- ---ATGT--T TAGTTTAAA- -TGTGTGCTG gorilla CTAAAAGT-- AAA------- ---ATTT--T TAGTTTAAA- -TGTGTGCTG orangutan ---------- ---------- ---------- ---------- ---------- gibbon CTAAAAAT-- AAA------- ---ATTT--T TAGTTTAAA- -TGTG---TG colobus_monkey CTAAAAGT-- TAA------- ---ATGT--T TAGTTTAAA- -TGTGTGATG vervet ---------- ---------- ---------- ---------- ---------- baboon CTAAAAGT-- AAA------- ---ATGT--T TAGTTTAAA- -TGTGTGCTG macaque CTAAAAGT-- AAA------- ---ATGT--T TAGTTTAAA- -TGTGTGCTG dusky_titi CTGAAAGT-- AAA------- ---TTTT--T TAGTTTAAA- -TGTGTGCAG owl_monkey CTGAAAGT-- AAA------- ---CTTT--T TAGTTTAAA- -TGTATGCAG squirrel_monkey CTGAAAGT-- AAA------- ---ATTT--T TAGTTTAAA- -TGTGTGCAG marmoset CTGAAAGT-- AAA------- ---TTTT--T TAGTTTAAA- -TGTGTGCAG galago ---------- ---------- ---------- ---------- -----TGCTG mouse_lemur ---------- ---------- ---------a taatttaaa- -tatGTGCTT lemur ---------- ---------- ---------C TAATTTAAA- -TAT-TGCTC rabbit CTAAGAAT-- AAA------- ---ATTT--C CAATTTAAA- -TATG----- st_squirrel ---------- ---------- ---------- ---------- -----TGCTC guinea_pig ---------- ---------- ---------- ---------- -----CACTC rat ---------- ---------- ---------- ---------- -----TGATC mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTAAAAAT-- AAA------- ---ATTT--C CAATGTTAT- -TATG----- shrew ---------- ---------- ---------- ---------- -----TGCGC rfbat CTAAAAAT-- AAA------- ---ATTT--C CAATTTAAA- -TATGTGCTC cpbat ---------- ---------- ---------- ---------- ---------- cat GTAAAAAT-- AAA------- ---GTTT--C CAATTTAAA- -TATGTACTC clouded_leopard GTAAAAAT-- AAG------- ---GTTT--C CAATTTAAA- -TATGTACTC ferret GTAGAAAT-- AAA------- ---AATT--C CAATTTAAA- -TA--TGCTC dog CTAAAGAT-- AAA------- ---ATTT--C CAATTTAAA- -TATGTGCTC pig ---------- ---------- attaaat--a acattttaat CTATGTGTTC muntjak_indian Ctaaaaatta aaa------- ---aaat--a gaatttaaa- -tatGTGCTC sheep Ctaaaaatta aaa------- ---aaaa--a aaatttaaa- -tatGTGCTC cow Ctaaaaatt- aaa------- ---aaaa--t taatttaaa- -tatGTGCTC horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---ATTTT-T CTATTAAAA- -TATGTGCTC elephant ---------- ---------- AT-TTCTT-T CAGTTTAAA- -TATGTGCTC tenrec ---------- --A------- ---TTCTT-C CAGTTTAAG- -TATGTGCTC wallaby ---------T ATAAGGATAG AG-ATA---- ------ATA- -ACTATGCTC monodelphis ---------T ATAAGGATAG GG-ATA---- ------ACA- -GCTGTGCTC opossum ---------T ATAA------ GG-ATA---- ------ACA- -GCTGTGCTC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGT TAG-AAAGAT chimp --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGT TAG-AAAGAT gorilla --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGT TAG-AAAGAT orangutan ---------- ---------- ---------- ---------- ---------- gibbon --CTTTCC-A CTAGATGGGA GTACGAGATA AC-CAGATGT TAG-AAAGAT colobus_monkey --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGT TAG-AAAGAT vervet ---------- ---------- ---------- ---------- ---------- baboon --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGT TAG-AAAGAT macaque --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGT TAG-AAAGAT dusky_titi --CTTTCC-A CTAGATGGGA GTATAAGATA AC-CAGATGC TAG-AAAGAT owl_monkey --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGC TAG-AAAGAC squirrel_monkey --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGA TAG-AAAGAC marmoset --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGATGC TAG-AAAGAC galago --CTTTCC-A CTAGATGGGA GTGTGAGATA AC-CAGATGT TGG-AAAGAA mouse_lemur --CTTTCC-A CTAGATGGGA GTGTGAGATA AC-CAGAGGA TGG-AAAGAA lemur --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAGACGT TGG-AAAGAA rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel --CTTTCC-A CTAGATGGGA GTATGAGATA AC-CAAATAT AAG-ACTG-- guinea_pig --TGTTCC-A CTAAACGGGA GTATGAGATA A--TAGATGT AAG-AAAGAA rat --CTTTCC-A CTAGATGGGG GTATGAGATA AC-TGGATGC AAG-AAAGGA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew --CTTTCC-A CTAGATGGAA GTATTACATA ACTTGGACGG A-------AG rfbat --CTTTCC-A CTAGATGGGA GTGTGAGATA AC-CAGATAG G-------AG cpbat ---------- ---------- ---------- ---------- ---------- cat --CTTTCC-A CTGGGTGGGA GTATGAGATA AC-CAGATAT A-----AGAG clouded_leopard --CTTTCC-A CTGGGTGGGA GTATGAGATA AC-CAGATAT A-----AGCG ferret --CTTCCC-A CTGGGTGGGA GGATGAGATA AC-CAGATTT A-----AGAG dog --CTTTCC-A CTGGGTGGGA GTATGAGATA AC-CAGATGT A-----AGAG pig --CTTTCC-A CCAGATGGAA GTATGAGATA AC-CAGATTC A-----AGAG muntjak_indian --CTTTCC-A GTAGATGGAA GTATGAGATA AC-CAGTTGT A-----AGAG sheep --CTCTCC-A GTAGATGAAA GTGTGAGATA AC-CAGATGG A-------AG cow --CTTTCC-A GTAGATGAAA GTATGAGATA AC-CAGATGT A-------AG horse ---------- ---------- ---------- ---------- ---------- armadillo --CTTTCC-A TTAGATGGGA GTATGAGGTA AC-CA----- ----AAA--- elephant --CTTTCC-A CTAGATGGGA GTATAAGATA GC-CACATGT AAG-AAAGAG tenrec --CTTTCC-A CTAGATGGGA G--------- ---------- ----AAAGGA wallaby TTTTTTCC-A CTAGATGGGA GTGTAAGATA A--CAGCCA- GAGCAAGAAA monodelphis TTTTTTCC-A CTAGATGGGA GTAGAAGATA A--TAGCTAT GAGCAAGGAA opossum TTTTTTCCCA CTAGATGGGA GTATAAGATA A--TAGCTAT GAGCGAGGAA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TATTTTATAG CTGTT-TCTG ATGTAGATAA A---TTCCAT Gat------t chimp TCTTTTATAG CTgtt-tctg atgtagataa a---ttccat gat------t gorilla TCTTTTATAG CTGTT-TCTG ATGTAGATAA A---TTCCAT Gat------t orangutan ---------- ---------- ---------- ---------- ---------- gibbon TCTTTTATAG CTgtt-tctg atatagataa a---ttccat gat------t colobus_monkey TCTTTTATAG CTgtt-tctg atgtagagaa a---ttccat gac------t vervet ---------- ---------- ---------- ---------- ---------- baboon TCTTTTATAG CT-------- ---------- ---------- ---------- macaque TATTTTATAG CTGTT-TCTG ATGTAGAGAA A---TTCCAT GAC------T dusky_titi TATTTTATAA CTATT-TCTG ATGTAGAGAA A---TTTCAT Gat------t owl_monkey TATTTTATAA CTGTT-TCTG ATGTAGAGAA A---TTTCAT GAT------T squirrel_monkey TATTTTATAA CTGTT-TCTG ATATAGAGAA A---TTTCAT GAT------T marmoset TATTTTATAA CTGTT-TCTG ATGTAGAGaa a---ttttat gat------t galago TCTTTTATGG ATGTA-TCTG ATATAGAGAA A---TCCCAT AAT------T mouse_lemur TCTTTTATAG CTGTT-TCTG ATCTAGAGAA A---TCCCGT GAT------T lemur TCTTTTATAG CTGTT-TCTG ATGTAGAGAA GAAGTCCCAT GAT------G rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel --TTTTATAG CTGTT-TCTG ATATAGATAA A---TCCCAT GAC------T guinea_pig GCTTTTATAG CT-------- ---------- ---------- ---------- rat TCTTTTATAG CT-------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew TGTCTTTTGG CTTTT-ACTG ATGTAGAGAA A---TCCAGT GAC------- rfbat TCTTTTATAG CTctt-tcta acatagagaa a---tcaatt att------t cpbat ---------- ---------- ---------- ---------- ---------- cat TCTTTTATAG CTTTT-TTTG GTGTAGAGAA A---TCCAA- ---------T clouded_leopard TCTTTTATAG CTTTT-TTTG GTGTAGAGAA A---TCCAA- ---------T ferret TCTTTTATAG CTTTA-AGTA GTATAGAGAA A---TC---- ---------- dog TCTTTTATAG CTTTT-AGTG ATGCAGAGAA A---TCTAA- ---------T pig TCTGTTATAG CTTTT-TCCa atgtagagaa a---tctaat gat------t muntjak_indian TCTTTTATAG CTTTT-TCTG ATGTAGAGAA A---TCCAAT Gat------t sheep TCTTTCAGGG CTTTT-TCTG ATGTAGAGAA A---TCCAAT Gat------t cow TCTTTTATAG CTTTT-TCTG ATGTAGAGAA A---TCCAAT GAT------T horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- --TTGTTaag aggtaga--- a---cttat- ---------t elephant TCCTTTCTAG CCTTG-TAAG AGGTAGA--- A---TTTAt- ---------t tenrec CCTCTTCTCT CTTTG-GCAG AG---AG--- A---TTTAT- ---------T wallaby TCTTTGAGAG CC-------- --GCTTAA-- ---------- -ACGTAGATA monodelphis TGTTTGAGAG TT-------- ---------- ---------- ---------- opossum T--CTGAGAG TA-------- --GTTTAAC- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human tatattaatt tta---aatA AATTATATAA TTC-----AT TTCCTTTATT chimp tatattaatt tta---aat- ---TATATAA TTC-----AT TTCCTTTATT gorilla tatattaatt tta---aat- ---TATATAA ---------- ---------- orangutan ---------- ---------- ---TATATAA TTCATTTTAT TTCCTTTATT gibbon tatattaatt tta---agt- ---TATATAA TTCATTTTAT TTCCTTTATT colobus_monkey tatattaatt tta---aat- ---TATATAA TTCATTTTAT TTTCT---TT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---TATATAA TTCATTTTAT TTTCTTTATT macaque TATATTAATT TTA---AAT- ---TATATAA TTCATTTTAT TTTCTTTATT dusky_titi tatattaatt tta---aat- ---CATATAA --TATTATAT TTCCTTTATT owl_monkey TAT----ATT TTA---AAT- ---CATATAA ATTTTTTTAT TTCCTTTATT squirrel_monkey TATATTAATT TTA---AAT- ---CATATAA ---CTTTTAT TTTCTTTATT marmoset tatattaatt tta---aat- ---CATATAA --TTTTTTAT TTCCTTTATT galago TATGTTAGTT TTA---AAT- ---TATATAA --------A- TTCTTT---- mouse_lemur TATATTAGTT TTA---AAT- ---TATATAA --------AT TTATTT---- lemur TATATTAGTT TTA---AAT- ---TACATAA --------AT TTCTTT---- rabbit ---------- ---------- ---GATATAA --------AT TTTTTT---- st_squirrel TATATGAATT TCA---AAT- ---TATATAA --------AT TTCTTT---- guinea_pig ---------- ---------- ---TGTATAA --------GC TT-TTT---- rat ---------- ---------- ---CATATAA --------AT TTCTTT---- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---TACATAA ---------- ---------- shrew -------ATA CTG---AAT- ---TACATGA --------T- -TTTTT---- rfbat tatattaatt tta---aat- ---TACATAA --------T- -TCTTT---- cpbat ---------- ---------- ---------- ---------- ---------- cat TTTATTTATG TTA---AAT- ---TATATAA --------A- ---TTT---- clouded_leopard TTTATTCATT TTA---AAT- ---TATATAA --------A- ---TTT---- ferret -----CAATT TTA---AGT- ---TATATAA --------A- ---TTT---- dog TTTATTAATT TTA---AAT- ---TATATAA --------A- ---TTT---- pig tatattaatt tta---aat- ---TATATAA --------AT TTCTTT---- muntjak_indian tatattaatt tta---aat- ---TATATAA --------AT TTCTTT---- sheep tatattaatt tta---aat- ---TATATAA --------AT TTCTTT---- cow TATATTAATT TTA---AAT- ---TATATAA --------AT TTCTTT---- horse ---------- ---------- ---------- ---------- ---------- armadillo tatactcttg ccagccatt- ---TATATAA ---------T TTCTTT---- elephant tacgctctta ccagccatt- ---TATATAA --------AT TAATTT---- tenrec TATACCCCCA CCACCCAGG- ---TGTATAA --------GT TTGTTG---- wallaby TTCGTTATTA TGG---AGC- ---TATATAA --------CT TTCTAT---- monodelphis --CATTAACA TGG---ATC- ---TATATAA --------CC TTATAT---- opossum -------ACA TGG---AGT- ---TATATAA --------CC TTATAT---- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---TTCATAA --------AT GTCTTT---- fugu ---------- ---------- ---TGCATAG --------TT TTATTT---- tetra ---------- ---------- ---TGCATAG --------TT TTATTT---- human AATACTATAA GTTGTTT-CT AATCATAATG TTGGTATTAA TTGCTTATCT chimp AATACTATAA GTTGTTT-CT AAACATAATC TTGGTA---- ---CTTATCT gorilla ------ATAA GTTGTTT-CT AAACATAATC TTGGTA---- ---CTTATCT orangutan AATACTATAA GTTGTTT-CT AAACATAGTC TTGGTA---- ---CTTATCT gibbon AATACTATAA GTTGTTT-CT AAACATAATC TTGGTA---- ---CTTATCT colobus_monkey AATATTATAA GTTGTTT-CT AAACATACTC TTGGTA---- ---CTTATCT vervet ---------- ---------- ---------- ---------- ---------- baboon AATACTATAA GTTGTTT-CT AAACATGCTC TTGGTA---- ---CTTATCT macaque AATACTATAA GTTGTTT-CT AAACATGCTC TTGGTA---- ---CTTATCT dusky_titi AATACTATAA GTTGTTT-CT AAACATAATC TTGGTG---- ---CTTATCT owl_monkey AATACTATAA GTTGTTT-CT GAACATAATC CTGGAG---- ---CTTATCT squirrel_monkey AATACTATAA GTTGTTT-CT AAACATAATC TTAGAG---- ---CTTATCT marmoset AATACTATAA GTTGTTT-CT AAAAATAATC TTGGAG---- ---CTTATCT galago --TACTATAA GTTGTTT-CT AGATATAATT TTGGTG---- ---TTTGTAT mouse_lemur --TACTATAA GTTGTTT-CT AGACGTAATT TTGGTG---- ---TTTATAT lemur --TACTATAA GTTGTTT-CT AGACATAATT TTGGTG---- ---CTTATAT rabbit --TACTATAA GTTGTTT-CT AAACACAATT CTGGTG---- ---CTCATCA st_squirrel --TACTATAA GT--CTG-TG AAA------- ---TTG---- ---CTTATCT guinea_pig --TACTATGA GTTCCTA-CC ATA----ATT TTCTTG---- ---CATGTCT rat --TACTATGA GT-------- ---------- ---------- ---cTTATCT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ------ATAA GTTGGTG-TA A--------- ---------- ---ATTAGCT shrew --TCTTATAA GTTGTTT-TT A--------- ---------- ---TTTATCT rfbat --TACTATGA GTTGTTT-CT A--------- ---------- ---TTTGTCT cpbat ---------- ---------- ---------- ---------- ---------- cat --TACTATAA GTTATTT-CT A--------- ---------- ---TTTCTCT clouded_leopard --TACTATAA GTTATTT-CT A--------- ---------- ---TTTATCT ferret --TACAATAA GTTGTTT-CC A--------- ---------- ---TTTATCT dog --TACTATAA GTTGTTT-CT A--------- ---------- ---CTTATCT pig --AATTATAA GTTGTTT-CT A--------- ---------- ---TTTAGCT muntjak_indian --TACTATAA GTTGTTT-CT A--------- ---------- ---TTATTCT sheep --TA-TATAA GTTGTTT-CT A--------- ---------- ---TTTCTCT cow --TACTATAA GTTGTTT-CT A--------- ---------- ---TTTCTCT horse ---------- ---------- ---------- ---------- ---------- armadillo --TAGTATAA GTTGTTTGCT AAACATAATG TTGTTA---- ---TCTATTT elephant --TACTATAA GTTGTTTCCT AAACATACTT TTGGTA---- ---TTTATCT tenrec --TACTATAA GT-GTTTGCT AAACATAGTT TTAAT----- ---TTTATCT wallaby --TACTATGA GTtaatG-GT A--------- ---------- --------at monodelphis --TGCTATAA GTTAATG-GT A--------- ---------- --------AT opossum --TGCTATAA GTTAATG-GT A--------- ---------- --------AT platypus ---------- ---------- ---------- ---------- ---------- chicken --TACTATAA GTTGACTGCT A--------- ---------- ---CTTTTCC fugu --CTTTAGTG GA-------- ---------- ---------- ---------- tetra --TATTACTG GA-------- ---------- ---------- ---------- human CTGCTGCCCA TAAATAG--- G---AATATA TGCT------ -TAGGTTAAT chimp CTGCTGCCCA TAAATAG--- G---AATATA TGCT------ -TAGGTTAAT gorilla CTGCTGCCCA TAAATAG--- G---AATATA TTCT------ -TAGGTTAAT orangutan ---CTGCCCA TAAATAA--- G---AATATA TGCT------ -TAGGTTAAT gibbon ---CTGCCCA TAAATAA--- G---AATATA TGCT------ -TAGGTTAAT colobus_monkey ---CTGCCCA TAAATAA--- G---AATATA TGCT------ -TAGGTTAAT vervet ---------- ---------- ---------- ---------- ---------- baboon ---CTGCCCA TAAATAA--- G---AATATA TGCT------ -TAGGTTAAT macaque ---CTGCCCA TAAATAA--- G---AATATA TGCT------ -TAGGTTAAT dusky_titi ---CTGCCTA TAAATAA--- A---AATATA TGCT------ -TAGGTTAAT owl_monkey ---CTGCCTA TAAATAA--- G---AATATA TGCT------ -TAGGTTAAT squirrel_monkey ---CTGCCTA CAAATAA--- G---ACTATA TGCT------ -TAGGTTAAT marmoset ---GTGCCTA TAAATAA--- G---AATATA TGCT------ -TAGGTTAAT galago ---CTTCCCA TAAATAA--- GAATAATATA TACT------ -TAGGTTAGT mouse_lemur ---CTTCCCG TAAATGA--- GAATAATATA TGCT------ -TGGGTTAAT lemur ---CTTCCCA TAAATAA--- GAATAATATA TGCT------ -TAGGTTAAT rabbit ---CTTCCCA TACATAA--- GAATAATGTG CGCT------ -TAGGTTAAT st_squirrel ---CTTCTCA TAAGTAA--- GAATAATACA TGCT------ -TAGATTAAT guinea_pig ---GTTTGTA TAAGCAT--- GAATAATATA TGCT------ -TAGATTAA- rat ---TTCCACA TACACAG--- GAAGAATATA TGCT------ -TAGGCTAAT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---T------ ---------- ---------- ---------- ---------- shrew ---CACT--- ---GTAA--- GAATACTATA ---------- ---------- rfbat ---CTTCCCA TGAATAA--- AAATAATGTA AGCT------ -TAGGTGAAT cpbat ---------- ---------- ---------- ---------- ---------- cat ---CTTCCCA CAAACAA--- GAATAATATA TGCT------ -TTGGTTAAC clouded_leopard ---CTTCCCA CAAACAA--- GAATAATATA TGCT------ -TTGGTTAAC ferret ---CTTCCCA TAAACAA--- GAATAATGTA TGAT------ -TAGGTTAAT dog ---CTTCCCA TAAACAA--- TAATAATACA TGCT------ -TAGGTTAGT pig ---CTTCCCA TATATAA--- GAATATAATA TA-T------ -TAGATTAAT muntjak_indian ---CTTCCCA TAAATAA--- GAATAATATA TGCT------ -TAGGTTAAT sheep ---CTTCCCA TAAATAA--- GAATAATATA TGCT------ -TAGGTTAAT cow ---CTTCCCA TAAATAA--- GAATAATATA TGCT------ -TAGGTTAAT horse ---------- ---------- ---------- ---------- ---------- armadillo ---CTTCCCA TAAATTA--- ---------- ---------- ---GGTTAAT elephant ---CTCCCCG TAAATTA--A GAATAATACA TGCT------ -TAGATTACT tenrec ---CGTCTCA TAAATTATAA GAATAAGATA TGCT------ -CAAATTCAT wallaby ---attcCCA CCACCAA--- AATGTCTATA TACTAGTTTG -TATTTTGGT monodelphis ---ATTCCTA CTGTTAA--- AATGTCTCTA TGCCAACTTA TTTTATTGGT opossum ---ATTCCTA CTGCTAA--- AATGTCTCTA TGCCAATTTA -TTTATTGGT platypus ---------- ---------- ---------- ---------- ---------- chicken ---CTTC--- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TCAGTT---T TGTTCCCTTT CATTCCTATG AGATT-GTTT TATTTTCATA chimp TCAGTT---T TGTTCCCTTT CATTCCTATG AGATT-GTTT TATTTTCATA gorilla TCAGTT---T TGTTCCCTTT CATTCCTATG AGATT-GTTT TATTTTCATA orangutan TCAGTT---T TGTTCCCTTT CATTCCTATG AGATT-GTTT TATTTTCATA gibbon TCAGTT---G TGTTCCCTTT CATTCCTATG AGATT-GATT TATTTTCATA colobus_monkey TCAGTT---T TGTTCCTTTT CATTCCTATG AGATT-GTTT TATTCTCATA vervet ---------- ---------- ---------- ---------- ---------A baboon TCAGTT---T TGTTCCCTTT CATTCCTATG AGATT-GTTT TATTCTCATA macaque TCAGTT---T TGTTCCCTTT CATTCCTATG AGATT-GTTT TATTCTCATA dusky_titi TCAGTT---T TGTTCTCTTT CATTCCTATG AGATT-GTTT TATTCTCATA owl_monkey TCAGTT---T TGTTCCCTTT CATTCCTATG AGATT-GTTT TATTCTCA-A squirrel_monkey TCAGTT---T TGTTCCCTTT CATTCCTATG AGACT-GTTT TATTCTCATA marmoset TCAGTT---T TTTTCCCTTT CATTCCTATG AGATT-GTTT TATTCTCATA galago ACAGTT---T TATTTCTTTT CATTCCCATG AGT------- ---------A mouse_lemur TAAGTT---T TATTTCCTTT CATTCCCATG AGATT-GATT TATTCTCATA lemur TCAGTT---T TGTTTCCTTT CATTCCCATG AGATT-GATT TATTCTCATA rabbit TCAGTT---T TGTTCCCTCG CATCCCCATG AGATT-GATG TCTTCTCATG st_squirrel TCAGTT---T TGTTC-CTTT TATTCCCATG AGATT-GATT TATTCTCATA guinea_pig -AAGTC---A GATCC-TTTT TATTCCCATG AGGTGAAATT TATTTTCCTA rat CTAGTT---T TGTTC--CCC TATTGCCATA AGATG-GATT TATTCTTATA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- TATTCTATTT CATTCCCATA AGGTT-GACT GATTTTCATA shrew ---------- TATTCCCTTT CATTCCTATG AGACA-GATT GATTTGTAT- rfbat TCAGTT---T TGTTCCCTTT CATTCCCATG AGATT-GATT GATTCTCATa cpbat ---------- ---------- ---------- ---------- ---------- cat TCAGTT---T TGTTCCCTTT CATTTTCATA AGGTT-GATT GATTCTCATA clouded_leopard TCAGTT---T TGTTCCCTTT CATTTTCATA AGGTT-GATT GATTCTCATA ferret TCAGTT---T TGTTTCCTTT CATTCCCATA AGACT-GATT GGTTCTCAT- dog TCAGTT---T TGTTCCCTTT CATTCCCATA AGATT-GATT GATTCTCATA pig TCAGTT---T TGTTTTCTTT CATTCCCATA AGATG-GATT GATTTTCAT- muntjak_indian TCGGTT---T TGTTCCCTTT TATTCCTATA AGATT-GATT GATCCTCATA sheep TCGGTT---T TGTTCCCTTT CATTTCTATA AGATT-GATT GATTCTCATA cow TTGGTT---T TGTTCCCTTT CATTCCTATA AGATT-GATT GATTCTCATA horse ---------- ---------- ---------- ---------- ---------- armadillo TCAGTT---T TGCTCCCTTT CATCTCCATA AGATT-GATT TATTCTCAT- elephant TCGGTT---T TGTCCCCTTT CATTCCTATG AGATT-GATT TATTCTCATA tenrec T--GTT---T TGTTCCCTTT CATTCCTATG AGA------- ---------A wallaby TCAGTTGCTT TTGTCCATTT CATTTCTATG AGACT-AATT CATTCATATa monodelphis TCAATTGA-T TTGTCCCTTT CATTTCTATA AGACT-GACT CATTCATATA opossum TCAATTGA-T TTGTCCCTTT CATTTCTATA AGACT-GATT CATTCATATA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- --CTC-TTTC CATTCCTATA AGA------- ---------- fugu ---------- --TGCCTTTC AACCCGCATA AGA------- ---------- tetra ---------- --TGCTTTCC CATCTGCATA AGA------- ---------- human -------TAT T-TTTAGTGC AAATTCAT-T TTTCTCAAAC ACTGTCAGTA chimp -------TAT T-TTTAGTGC AAATTCAT-T TTTCTCAAAC ACTGTCAGTA gorilla -------TAT T-TTTAGTGC AAATTCAT-T TTTCTCAAAC ACTGTCAGTA orangutan -------TAT T-TTTAGTGC AAATTCAT-T ATTCTCAAAC ACTGTCAGTA gibbon -------TAT T-TTTAGTGC AAATTCAT-T ATTCTCAAAC ACTGTCAGTA colobus_monkey -------TAT T-TTTAGTGC AAATTCAT-T ATTCTCAAAC ACTGTCAGTA vervet -------TAT T-TTTAGTGC AAATTCAT-T ATTCTCAAAC ACTGTCAGTA baboon -------TAT T-TTTAGTGC AAATTCAT-T ATTCTCAAAC ACTGTCAGTA macaque -------TAT T-TTTAGTGC AAATTCAT-T ATTCTCAAAC ACTGTCAGTA dusky_titi -------TAT T-TTTAGCAC AAATTCAT-T ATTCTCAAAT CCTGTCAGTA owl_monkey -------TAT T-TTTAGTAC AAATTCGT-T ATTCTCAAAC ACTGTCAGTA squirrel_monkey -------TAT T-TTTAGTAC AAATTCAT-T ATTCTCAAAC ACTGTCAGTA marmoset -------TAT T-TTTAGTAC AAATTCAT-T ATTCTCAAAC ACTGTCAGTA galago -------TA- T-TTTAGTGC AAACTCAT-T AGTCTCAAAC ACTGTCAGTA mouse_lemur -------TA- T-TTTAGTGC AAACTCAT-T ATTCTCAAAC ACTGTCAGCA lemur -------TA- T-TTTAGTGC AAACTCAT-T ATTCTCAAAC ACTGTCAGTA rabbit GCAAACTCAT TATTTAGTGC AAACTCAT-T ATTCTCAAAC ACCATCAGTA st_squirrel -------TAT T-TTTAGTGC AAAC------ ---------- ACTGCCAGTA guinea_pig -------TAT T-TTTAGTGC AAACTCAT-T ATTCTCAA-- ACTGTCAGTA rat -------TAT T-TATGGTGT GAACCCCT-C ATTCTCAAAT ACTGTCTGTA mouse ---------- ---------- ---------- ---------- ---------- hedgehog -------CAG T-TTTAGTGT AGACTA---- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat -------tat t-tttaGTGC GAACTAAT-T ATTC------ ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat -------TAT T-TTTAGTAC AAACTAAT-T ATTC------ ---------- clouded_leopard -------TAT T-TTTAGTGC AAACTAAT-T ATTC------ ---------- ferret --------AC T-TTTAGTGC AAACTAAT-T ATTC------ ---------- dog -------TAT T-TTTAGCGC AAACTAAT-T ATTC------ ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian -------TAT T-TTTAGTGC ACACTAGT-T ATTC------ ---------- sheep -------TAT T-TTTAGTGC ACACTAAT-T ATTC------ ---------- cow -------TAT T-TTTAGTGC ACACTAAT-T ATTC------ ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant -------TAT T-TTTAGTGC AAACTAAT-T ATTCTCAAAC AGTGCCAGTA tenrec -------TGT T-TTTAGTGC AAACTAAT-T ATTCTCAAAC ACTTTCAGTA wallaby -------tat t-aCTTTTGC AAAGCCAATT ATTCTCGAAT ATTGTCGGTC monodelphis -------TTT T-CTTTATGC AAAGCCAG-- --TCTCAAAT ATTGTCAGTC opossum -------TTT T-CTTTATGC AAAGCCAG-- --TCTCAAAT ATTGTCAGAA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ----TTTCAC TCTGAAAGAA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- chimp TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- gorilla TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- orangutan TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- gibbon TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- colobus_monkey TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- vervet TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- baboon TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- macaque TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- dusky_titi TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- owl_monkey TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- squirrel_monkey TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- marmoset TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- galago TTTTTAA-TT GAGTCCTTAA TTACTTT--- TAAC------ -----AT--- mouse_lemur TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- lemur TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- rabbit TTTTTAA-CT GAATCCTTAA TTACTTT--- GAAC------ -----AGGA- st_squirrel TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----ATGA- guinea_pig TTTTTAA-TT GAATCCTTAA TTACTTT--- GAAC------ -----AT--- rat CTTTTAT-TC AAATCCTTAA TTATTTT--- GAGC------ -----ATGA- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---TTAA-AC ATGTTCTGTA TT--TTT--- GAGT------ -----ATGA- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---TTAA-TT GAATCTTTAA TTACTTT--- GAAC------ -----ATCA- cpbat ---------- ---------- ---------- ---------- ---------- cat ---TTAA-TT GAGTCCTTAA TTACCTT--- GAAC------ -----GTGA- clouded_leopard ---TTAA-TT GAGTCCTTAA TTACCTT--- GAAC------ -----ATGA- ferret ---TAAG-TT GCGTCCTTAA TTATTTT--- GAAC------ -----ATGA- dog --------TT GAGTCCTTAA TTATCTT--- AAAC------ -----ATGA- pig ---TTTA-TA TAGTCTTTAA TTACTTG--- GACA------ -----ATGA- muntjak_indian ---------- ---------- ---------- ---------- -------gA- sheep ---------- ---------- ---------- ---------- -------gA- cow ---------- ---------- ---------- ---------- -------gA- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant TTTTTAA-TT GAGTCCTTAA TTACTTT--- GAAC------ -----AT--- tenrec TTTGTCA-TT GAATCCTTAA TTACTGT--- GACC------ -----AT--- wallaby CTTTTAAGTG AAGTCTTTAA TCACCTT--- TAAT------ -----AT--- monodelphis CATTTAAGCA AAATTTTTGA TCACCCT--- TAAT------ -----AT--- opossum TGTTTAAGCC AAATTTTTGA TCACCCT--- TAAT------ ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken GCTTTGA--- GAGCAAACAA TAACTTTTGG AAACCAGATC TCAAGATGAA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTAATAG chimp TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTAATAG gorilla TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTAATAG orangutan TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTAATAA gibbon TTTTAA-TTT ACTACTGCC- -TAGAAATTA GT-GGT--GT TAATTAATAG colobus_monkey TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATGAATAG vervet TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTAATAG baboon TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTGATAG macaque TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTGATAG dusky_titi TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTAATAG owl_monkey TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTAATAG squirrel_monkey TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT ---TTAATAG marmoset TTTTAA-TTT ACCACTGTC- -TAGAAATTA GT-GGT--GT TAATTAATAG galago --CTAA-TTT GCTACATTC- -TGGAAATTA GT------AT TAATTAAAA- mouse_lemur TTTTAA-TTT ACTACTGTC- -TAGAAATTA GT-G----GT TAATTAACAG lemur TTTTAA-TTT ACCACTGTC- -TAAAAATTA AT-G----GT TAATTAACAG rabbit CTTTAA-TTT ACTG---TC- -TAGAAATCA GT-GGT--GT TAATTAACAG st_squirrel TTTTAA-TTT ACTGTTATC- -TAGAAACTA GT-GGT--GT TAATGAGCAG guinea_pig TTTTAA-TTT ACTACGCTC- -TAGAAATTA GT-GGC--GT TAATGAGCAG rat CTTTAG-TTT ACTACTCTC- -TTGAAATTG GTGGGT--GT TAACGAGCAG mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTTCTA-TTT ACTGTTGTT- -CAATAATTA GT-G------ ---TTGACAG shrew ---------- ---------- ---------- ---------- ---TTAACAG rfbat CTTTCA-TTT ACTACTGTC- -TAGAAATTA GT-GGT--GT TAATTCCCAG cpbat ---------- ---------- ---------- ---------- ---------- cat TTTTCA-TTT CATACTGTC- -TAGAAATTA GT-GGT--GT TAATTAACAG clouded_leopard TTTTCA-TTT CATACTGTC- -TAGAAATTA GT-GGT--GT TAATTAACAG ferret TTTTCA-TTT CATACTCTC- -TAGAAACCA GT-GAT--GT TAATTAACAG dog TTTTCA-TTT CATATTGTG- -TAGAAATTA GT-G------ ---TTAACAG pig TTTTCA-TTT ACTACAGTC- -TAGTAATTA CT-GGT--AT TATTTAACAG muntjak_indian TTTTCA-CTT ACTGCTGTC- -TAGAAATTA GT-AGT--GT TAATTAACAG sheep TTTTTAACTT ACTGCTGTC- -TAGAATTTA GT-AGT--GT TAATTAACAG cow TTTTCA-CTT ACTGCTGTC- -TAGAAATTA GT-AGT--GT TAATTAACAG horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---TTAACAG elephant AATTCA-TTT ATTACTGTC- -TAGAA-TTA GT-GGC--GT TAATTAACAG tenrec AATTCA-CTT TTTACCATC- -TAGAAATTA GT-AGT--GT TAATTAACA- wallaby ---TCA-TTC AACATTGTCT ATAAGAACTA CA-GGT--TT TAATCAACAG monodelphis ---TCA-TTC AATGTTCTCT ATAAAAACTA TA-GGA--TT TAATCAACAG opossum ---TCA-CTG AATATTGTCT ATAAAAACTA TA-GGA--TC GAATCAACAG platypus ---------- ---------- ---------- ---------- ---------- chicken T-TCAG-TTC AAGACTTTC- -TAGTAACTC TT-AATTCCT TAGCTAATAA fugu ---------- ---------- ---------- ---------- ---TCGCTG- tetra ---------- ---------- ---------- ---------- ---TAAATG- human A-GCCAT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A chimp A-GCCAG-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A gorilla A-GCCAT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A orangutan A-GCCAT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A gibbon A-GCCAT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A colobus_monkey A-GCCAT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A vervet A-GCCAT-AG CTA---G--- --CCAAAGTG G-TCTGCA-T -TTCT----A baboon A-GCCAT-AG CTA---G--- --CCAAAGTG G-TCTGCA-T -TTCT----A macaque A-GCCAT-CG CTA---G--- --CCAAAGTG G-TCTGCA-T -TTCT----A dusky_titi A-GCCGT-AG CTA---T--- --CCCAAGTG G-TCTGCA-T -TTCT----A owl_monkey A-GCCGT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A squirrel_monkey A-GCCGT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A marmoset A-GCCGT-AG CTA---T--- --CCAAATTG G-TCTGCA-T -TTCT----A galago ------C-AG CTC---T--- --CCATGTTG G-TCTGCA-T -TTCT----A mouse_lemur A-GCCAT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A lemur A-GCCAT-AG CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A rabbit A-GCCATGAT CTG---T--- --CCAAGTTG G-TATGCA-T -TTCT----A st_squirrel A-GCCAT-AT CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A guinea_pig ACACCAT-GC CTA---T--- --CCAAAGTG G-TCTGCA-T -TTCT----A rat A-GCCAT-AG CTG---T--- --CTACAGTG G-CCTGCA-T -TTC-----A mouse ---------- ---------- ---------- ---------- ---------- hedgehog A-ACCAC-AA CTG---T--- --CCAAAATG C-TCTGCA-T -TTCA----A shrew A-GCCGA-AG CTA---T--- --CCAAAGTG A-TCTGCA-T -TTCT----A rfbat A-GCCAC-GC CAG---G--- --CC-CCGCG C-TCTGAT-T -TGCT----A cpbat ---------- ---------- ---------- ---------- ---------- cat A-GCCAT-AG CTA---T--- --CCTAAGTG G-TCTGCA-T -TTCT----G clouded_leopard A-GCCAT-AG CTA---T--- --CCTAAGTG G-TCTGCA-T -TTCT----G ferret A-GCCAT-AG CTA---T--- --CCTAAATG G-TCTGCA-T -TTCT----A dog A-GTCAT-AG CTA---T--- --CCTAAGTG G-TCTGCA-T -TTCT----A pig A-GCCAT-AG CTC---T--- --CCAGAGGG G-TCTGCA-T -TTCT----A muntjak_indian A-GCCCT-AG CTA---T--- --CCAGAGTG G-TCTGCA-T -TTCT----A sheep A-GCCCT-AG CTA---C--- --CCAGAGTG G-TCTGCA-T -TTCT----A cow A-GCCCT-AG CTA---T--- --CCAGAGTG G-TCTGCA-T -TTCT----A horse ---------- ---------- ---------- ---------- ---------- armadillo A-GCCAT-AG CTT---T--- --CTAAAGTG G-TCTTTT-T ---------A elephant A-GCCAT-AG TTA---T--- --CCCAAGTG G-TCTGCA-T -TTCTAGCTA tenrec A-GCCAT-AG TTA---TGTT AACCCATGCC G-CCTGCT-T CTTCTGTCTA wallaby A-GCCAT-TG CTAGCTT--- --CCAAAGTG A-TCTGCA-T -TTCT----A monodelphis A-GCCAT-TG CTTTCTT--- --CTAAAGTG G-TCTACA-T -TTCT----A opossum A-GCCAT-TG CTTTCTT--- --CTAAAGTG G-TCTACA-T -TTCT----T platypus ---------- ---------- ---------- ---------- ---------- chicken A-G-CAT-TG CTCTGTT--- --CCAAAGGC A-TTTGCA-T -TTCT----A fugu ---------- ---------- ---------- -CTCGGCTCC -TTCC----G tetra ---------- ---------- ---------- -TTTGGCTCT -GTCG----G human CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- chimp CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- gorilla CTGTAAAA-- -----TGCA- ---------- -ATTTG---- ---------- orangutan CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- gibbon CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- colobus_monkey CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- vervet CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- baboon CTGTAAAA-- -----TGCA- ---------- -ATTTGAA-- --------A- macaque CTGTAAAA-- -----TGCC- ---------- -ATTTGAA-- --------A- dusky_titi CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- owl_monkey CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- squirrel_monkey CTGTAAAA-- -----TACA- ---------- -TTTTG-A-- --------A- marmoset CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- galago CTGTAAAA-- -----TCCA- ---------- -ATTTG---- --------A- mouse_lemur CTGTAAAA-- -----TCAG- ---------- -ATTTA---- --------A- lemur CTGTAAAA-- -----TCCG- ---------- -ATTTG---- --------A- rabbit CTGTAAAG-- -----TGCA- ---------- -ATTCG-AAA AAAA----A- st_squirrel CTGTAAAA-- -----TGCA- ---------- -ATTTG-GAA AAAAAATAA- guinea_pig CTGTAAAA-- -----TGCA- ---------- -ATTTG-A-- --------A- rat TGATAAAC-- -----TGCA- ---------- -GTTTa-aaa aaaaaat-a- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------G- shrew CTGTAAGA-- -----TGCA- ---------- -AGTTG---- --------G- rfbat CTGTAACA-- -----TGCA- ---------- -ATTTG---- --------G- cpbat ---------- ---------- ---------- ---------- ---------- cat CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------GA clouded_leopard CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------GA ferret CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------G- dog CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------G- pig CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------G- muntjak_indian CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------G- sheep CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------G- cow CTGTAAAA-- -----TGCA- ---------- -ATTTG---- --------G- horse ---------- ---------- ---------- ---------- ---------- armadillo TTGTAAAA-- -----TGCa- ---------- -atttt---- --------a- elephant CTGTAAAA-- -----TGCA- ---------- -ATTTA---- --------A- tenrec CTAGAAAA-- -----TGCA- ---------- -ATTTG---- --------A- wallaby CTGTAA---- --------A- ---------- -ATTTG-GGC ATTTG---G- monodelphis CTGTAAAA-- -----TGGA- ---------- -ATTTG-GGC ATTTG---G- opossum CTGTAAAA-- -----TGGA- ---------- -ATTTG-GGC ATTTG---G- platypus ---------- ---------- ---------- ---------- ---------- chicken CTGTAAAA-- -----TACGT AGAATTGTGG CATTTA---- --------A- fugu CCTCAGGGCC CCTCGTGGG- ---------- -ACCAG---- --------G- tetra CCTCAGGACC ACCCCTGGA- ---------- -ACCAG---- --------G- human AAAAATAAAA AAATGAAAAG AAAACTAAAA ----TCTGTG ----GCC-TT chimp AAAAATAAAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT gorilla AAAAATAAAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT orangutan AAAAATAAAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT gibbon AAAAATAAAA AAGTGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT colobus_monkey AAAAATAAAA AAATGAAAAG GACACTAAAA ----TCTGTG ----GCC-TT vervet AAAAATAAAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT baboon AAAAATAAAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT macaque AAAAATAAAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT dusky_titi AAAAAAAAAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT owl_monkey AAAAA--AAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT squirrel_monkey AAAAAATAAA AAATGAAAAG GAAACTAAAA ----TCTGTG ----GCC-TT marmoset AAAAAAAAAA AAATG-AAAG GAAACTAAAA ----TCT-TG ----GCC-TT galago AACAATAAAA AAATAGAAAG GAAATTAAAA ----TCTGTG ----GCC-TT mouse_lemur AAAAATAAAA AAATAAAAAG GAAATTAAAA ----TCTGTG ----GCC-TT lemur AAAAATAAAA AAATAAAAAG GAAATTAAAA ----TCTGTG ----GCC-TT rabbit AAAAATAAAA AAAGGAAAAG GAAATTAAAA TATGTATGTG ----GCC-TT st_squirrel TAATAAAAGG AAATAAAAAG GAAATTAAAA ----TCTGTG ----GCCTTT guinea_pig GAAAATAAAA GTATAAAATT GAATTTTC-A ----TCTGTG ----GCC-TT rat aaaaataaaa AAATGTAAAG GAAGTTACAA ----TCTGTG ----GCC-TT mouse ---------- ---------- ---------- ---------- ---------- hedgehog AAAAATAAAT AAACAAGAAG GAAATTAAAA ----TCTGTG ----GCC-TT shrew AAAAATAAAT AAATGAAAAG AAAATTAAAA ----TCCGTG ----GCC-TT rfbat AAAAATAAAT AAATGCAAAG GAAATGAAAA ----TCTGTG ----GCC-TT cpbat ---------- ---------- ---------- ---------- ---------- cat AAAAATAAAC AAATG-AAAG GAAATTAAAG ----TCTGTG ----GCC-TT clouded_leopard AAAAATAAAC AAATG-AAAG GAAATTAAAG ----TCTGTG ----GCC-TT ferret AGAAATAAAT AAATG-AAAG GAAATTAAAA ----TCTGTG ----GCC-TT dog AAAAATAAAT AAATG-AAAG GAAATTAAAC ----TCCGTG ----GCC-TT pig AAAAATAAAC AAATGAAAAG GAAATTAAAA ----TCTGTG ----GCC-TT muntjak_indian AAAAATAAAA AAATGAAAAG GAAATTAAAA ----TTTGTG ----GCC-TT sheep AAAAATAAAA AAATGAAAAG GAAATTAAAA ----TTTGTG ----GCC-TT cow AAAAATAAAA AAATGAAAAG GAAATTAAAA ----TTTGTG ----GCC-TT horse ---------- ---------- ---------- ---------- ---------- armadillo aaaaataata AAATGAGAAG GAAATTAAAG ----TCTGTG ----GCC-TT elephant AAAAATAAAA AAGTGAAAAG GAAATGAAAA ----TCTGTG ----GCC-TT tenrec GAAAATAAAA AAGTGAAACG GAAATTAAAA ----TCTGTG ----GCC-TT wallaby AAAAAATAAA AAATGGAAAG GAAATAGCTA ---GGCAAAG ACCTGCC-CT monodelphis AAAAAT-AAA AGATTGAAAA GAAACAAATA ---GTCAATG ACATGCC-CT opossum AAAAATAAAA AGATTGAAAA GGAACAAATA ---ATAAATG GCATGCC-CT platypus ---------- ---------- ---------- ---------- ---------- chicken GGTTATGGAA GTTTGACAAG TTATTTATGA ----TTTGTG ----AC---- fugu ACGGGTTGAG ---------- ---------- ---------- ---------- tetra ACAGGTGGAG ---------- ---------- ---------- ---------- human GAATATTTTA TTAATCCAAA GA-----ACA TGTA------ ------TAG- chimp GAATATTTTA TTAATCCAAA GA-----ACA TGTA------ ------TAG- gorilla GAATATTTTA TTAATCCAAA GA-----ACA TGTA------ ------TAG- orangutan GAATATT--- TTAATCCAAA GA-----ACA TGTA------ ------TAG- gibbon GAATATTTTA TTAATCCAAA GA-----ACA TGTA------ ------TAG- colobus_monkey GAATATT--- TTAATCCAAA GA-----ACA TGTA------ ------TAG- vervet GAATATT--- TTAATCCAAA GA-----ACA TGTA------ ------TAG- baboon GAATATT--- TTAATCCAAA GA-----ACA TGTA------ ------TAC- macaque GAATATT--- TTAATCCAAA GA-----ACA TGTA------ ------TAC- dusky_titi GAATATTTTA GTAATCCAAA GA-----ATA TG-------- ------TAG- owl_monkey GAATATTTTA GTAATCCAAA GA-----AT- TG-------- ------TAG- squirrel_monkey GAATATTTTA GTAATCCAAA GA-----ATA TG-------- ------TAG- marmoset GAATATTTTA GTAATCCAAA GA-----ATG TG-------- ------TAG- galago GAATATTTTA TTAATCCAAA GA-----ACA TGTA------ ------TAA- mouse_lemur GAATATTTTA TTAATCCAAA GA-----ACA TGTG------ ------TAG- lemur GAATATTTTG TTAATCCAAA GA-----ACA TGTA------ ------TAG- rabbit AAATATT--- TTAATCCAAA GA-----ACA TGTA------ ------TAG- st_squirrel TTAT------ -TAATCCAAA GA-----ACA --TG------ ------TCG- guinea_pig TCAT------ -TaatCCAAA GA-----ATA TGTA------ ------TAG- rat GAATA----- -TAACCCAAA GA-----ATA --TA------ ------TAG- mouse ---------- ---------- ---------- ---------- ---------- hedgehog GAATATT--- TTAACTTAAA GA-----ACA TGCA------ ------TAC- shrew GAATACT--- TTAATCCAAA GA-----GCA TGTA------ ------TG-- rfbat GGATATTTTA TTAATCCAAA GA-----ACA TATA------ ------TAC- cpbat ---------- ---------- ---------- ---------- ---------- cat AAGCACAATA TTAATCCAAA GA-----ACA TGTA------ ------TAC- clouded_leopard AAGCACATTA TTAATCCAAA GA-----ACA TGTA------ ------TAC- ferret AAATACTTTA TTAGTCCAAA GA-----ACA TGTA------ ------TAC- dog AAATACTTTA TTAATCCAAA GA-----ATA TGTA------ ------TAC- pig GAATATTTTA TTAATCCAAA GA-----ACA -GCA------ ------CAC- muntjak_indian GAATATTTTA TTAATCCAAA GA-----ACA TGTA------ ------TACG sheep GAATATTTTA TTAATCCAAA GA-----ACA TGAA------ ------TAC- cow GAATATTTTA TTAATCCAAA GA-----ACA TGTA------ ------TAC- horse ---------- ---------- ---------- ---------- ---------- armadillo GAATATTTTA TTAATCCAAA GA-----ATA TGTA------ ------TAC- elephant ATATATTTTA TTAATCCAAA GA-----GCA CATG------ ------TAG- tenrec GACTCACTTA TTAATCCAAA GA-----GCA TGTG------ ------CAC- wallaby TGATCTGTAA ATAGTTCTAA GA-----ATG TCCAAATCTC AAGGTATAT- monodelphis TGATCTGTGG ATAATTCTAG AACATCTGCG TATATATCTC AAGG--TAT- opossum TGATCTTTGA GTAATTCTAG AACATCTGCG TCTATATCTC AAGG--TAT- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -TTTTTTACT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA chimp -TTTTTTACT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA gorilla -TTTTTTACT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA orangutan -TTTTTTACT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA gibbon -TTTTTTACT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA colobus_monkey -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA vervet -TTTTTTACT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA baboon -TTTTTTACT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA macaque -TTTTTTACT CAAAA----- -----TAAA- -GCAGCAGGC GGCTCTTCAA dusky_titi -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTGAA owl_monkey -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCGCTTGAA squirrel_monkey -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTGAA marmoset -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTAGAA galago -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTTGA mouse_lemur -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAG lemur -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA rabbit -TTTTTTATT AAAAA----- -----TAAA- -GCAGCAGGG GGC------- st_squirrel -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGAG GGCTTTTCAA guinea_pig -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTT--- rat -GTTTTTATT GAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTTAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog -TTTTT---T CAGAA----- -----TAAA- -GCAGCAGAG GGCTCCTCAA shrew --TTTTTA-T TCAAA----- -----TAAAA TGCAGCAGGG GGCTCTTCAA rfbat -TTTTTTATT CAAAA----- -----TAAA- -ACAGCAGGG GGCTCTTCAA cpbat ---------- ---------- ---------- ---------- ---------- cat -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTTGA clouded_leopard -TTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCGA ferret -CTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA dog -TGTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA pig -TTTTTTATT CAAAA----- -----TAAA- -ACAGCAGGG GGCTCTTCTA muntjak_indian TTTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA sheep TTTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA cow TTTTTTTATT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA horse ---------- ---------- ---------- ---------- ---------- armadillo -TTTTTTGTT CAAAA----- -----TAAA- -GCAGCAGGG GGCTCTTCAA elephant --TTTCTGTT CAAAA----- -----TAAA- -ACAGCAGGG GGCTCTTCAT tenrec --TTTTTGTT CAAAA----- -----TAAA- -ACAGCAGGG GGCTCCTCAA wallaby -ACCGTTATT CAAAATAAAA AGA--CAAA- -TCAGCAGGG GGCTTGCCAA monodelphis -ACTGTTATC CAAAATAAAA AAAA-CAAA- -TCAGCAGGG GTCTTGCCAA opossum -ACTGTTATT CAAAATAAAA AAAACCAAA- -TCAGCAGGG GTCTTGCCAA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GCATAGATTT CCAAATTTGA CTTTTTTCAC CAAAGGCAAG GGATTCATCA chimp GCATAGATTT CCAAATTTGA CTTTTTTCAC CAAAGGCAAG GGATTCATCA gorilla GCATAGATCT CCAAATTTGA CTTTTTTCAC CAAAGGCAAG GGATTCATCA orangutan GCATAGATTT CCAAATTTGA CTTTTTTCAC CAAAGGCAAG GGATTCATCA gibbon GCATAGATTT CCAAATTTGA CTTTTTTCAC CAAAGACAAG GGATTCATCA colobus_monkey GCATAGATTT CCAAATTTAA CTTTTTTCAC CAAAGGCAAG GGATTCATCA vervet GCATAGAGTT CCAAATTTAA CTTTTTTCAC CAAAGGCAAG GGATTCATCA baboon GCATAGATTT CCAAACTTAA CTTTTTTCAC CAAAGGCAAG GGATTCATCA macaque GCATAGATTT CCAAATTTAA CTTTTTTCAC CAAAGGCAAG GGATTCATCA dusky_titi GCATAGATTT CCAATTCTGA CTTTTTTCAC CAAAGGCAAG GGATTCATCA owl_monkey GCATAGATTT CCAGTTCTGA CTTTTTTCAC CAAAGGCAAG GGATTCATCA squirrel_monkey GCATAGATTT CCAATTCTGA CTTTTTTCAC CAAAGGCAAG GGATTCATCA marmoset GCATAGATTT CCAATTCTGA CTTTTTTCAC CAAAGGCAAG GGATTCATCA galago GCACAAATTT CCAAATCTGA CTTTTTTCTC TAAAGGCAAG GGACTCATTA mouse_lemur GCATAGATTT CCAAATCTGA CTCTTTTCAC CAAAGGCAAG GGATTCATTA lemur GCATAGGTTT CCAAATCTGA CACTTTTCAC CAAAGGCAAG GGATTCATTA rabbit --ATAGA-TC CCAAATCTGA CTTTTTTCAC CAAAGGCGAG ACATTCATTA st_squirrel GCATATATTT CCAAGTCTGA CTTTTTTTAC CAAAGAGGGG AGATTCATTA guinea_pig -CATAATTTT CCAAGTCTGA ATTTCTTCAC TAAAGGCAAG AGATTCATTA rat GCATAGATTT CTAAATTCA- --CTTTTCAC CAAAGGCAAG AGATTCAGGG mouse ---------- ---------- ---------- ---------- ---------- hedgehog GCACAGATTT CCAAATCAAA ATTTTTCAAC TAAAGGCAAG AGATCCGTTA shrew GCATGGATTT CTATATCTGA CTTTTTCAAC CAAAGGCTAG AGATTCATTA rfbat GTATAAATCT CCAAATCTGA CTTTTTTCAC CAAAGGCAAA AGATTCATTA cpbat ---------- ---------- ---------- ---------- ---------- cat GCATAGATTT CCAAATCTGA CTTTTTTTAC C---CACAAG AGATTCACTA clouded_leopard GCATAGATTT CCAAATCTGA CTTTTTTTAC C---CGCAAG AGATTCACTG ferret GCATAGATTT CCCAATCTGA CTTTTTTTAC C---GGCAAG AGATTCATTA dog GCATAGATTT CCAAATCTGA CTTTTTTTAC C---GGCAAG AGATTCATTA pig GCATAGATTT CCAAATCTTA CTCTTTTTAC CAAAGGCAAG AGATTCATTA muntjak_indian GCACAGATTT CCAAATCTGA CTTTTTTCAC CAAAGGCGAG AGATTCATTC sheep GCACAGATTT CCAAATCTGA CTTTTTTCAC CGAAGTCAAG AGATTCATTA cow GCACAGATTT CCAAATCTGA CTTTTTTCAC CAAAGTCAAG AGATTCATTA horse ---------- ---------- ---------- ---------- ---------- armadillo GCATAAATTT CCAAATCTGA CTTTTTTCAC CAATGGCAAG AGACTCATTG elephant GCATAGATTT CCAAATCTGA CTCTTTTCAT CAAAGGCAAG AGAGTCATTA tenrec GCACAGATTT CCCA-TCTGC CTTTTTTCAC CAAAGGCAAG AGATTCATTA wallaby GTAAACATCT CCTAGTTCAA ATTTGTATTT CAAAGGCAGG AGCTTCTTCA monodelphis GTACAAGTCT CCCAGTTTGA ATTTGTATTT CAAATACAGG AGTTTCTTTA opossum GTACATGTCT TCCAATTTGA ATTTGTATTT CAAAGACAGG AGTTTCTTTA platypus ---------- ---------- ---------- ---------- ---------- chicken ---ACTACTC TCACATCTAG T--------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGCGTTT-AA chimp ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGCGTTT-AA gorilla ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGCGTTT-AA orangutan ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGCGTTT-AA gibbon ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGCATTT-AA colobus_monkey ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGTGTTT-AA vervet ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGTGTTT-AA baboon ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGTGTTT-AA macaque ---------C TGATTCATTC TCAAGGAATT TCCAACACAT AGTGTTT-AA dusky_titi ---------C TGATTCATTC TCAAGGAATT TCCAACACGT AGTGTTTAAA owl_monkey CTGATTCATC TGATTCATTC TCAAGGAATT TCCAACACGT AGTGTTTAAA squirrel_monkey ---------C TGATTCATTC TCAAGGAATT TCCAACACGT AGTGTTTAAA marmoset ---------C TGATTCATTC TCAAGGAATT TCCAACACGT AGTGTTTAAA galago ---------C TGATTCATTC CCAAGGAATT TCCAACACAT AGTGTTT-AA mouse_lemur ---------C TGATTCATTC TCAAGGAATT TCCAGCACGT AGTGGTT-AA lemur ---------C TGATTCATTC TCAAGGAATT TCTAACACGT AGTGTTT-AA rabbit ---------T TGACTCATTC TTAAGGAATT TCCAACACAT GGTGTTT-AA st_squirrel ---------T TGACTCATTC TTAAGCAATT TCCTACACTT AGTGTTT-AA guinea_pig ---------T TGACTCATTC TTAAGCAATT TCCAGCATGT AGTGTTT-AG rat ---------T TGAGTCATTC TTAAGCAATT TGTAACACGT AGTGTTT-AA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------C TGATTCATTC TTAAGGAACT TCCAACATGC AGTGTTT-AA shrew ---------C TGACTCATTC TTAAGGAATT TCCAACATGC AGTGTTT-AA rfbat ---------T TGACTCATTC TTAAGGAATT TCCAACA--C AGTGTTT-AA cpbat ---------- ---------- ---------- ---------- ---------- cat ---------T TGACTCATTC TCGAGGAATT TCCAACACAC AGTATTT-AA clouded_leopard ---------T TGACTCATTC TCGAGGAATT TCCAACACAC AGTATTT-AA ferret ---------T TGACTCATTC GTAAGGAATT TCCAACATGC AGTGTTT-AA dog ---------T TGACTCATTC TTAAGGAATT TCCAACATGC AGTGTTT-AA pig ---------T TGACTCATTC TTAAGGAATT TCCAACATGC AATGTTT-AA muntjak_indian ---------C TGACTCATTC TTAAGGAATT TTCAACACGA AGTGTTT-AA sheep ---------C TGACTCATTC TTAAGGAATT TTCAACACGC AGTGTTT-AA cow ---------C TGACTCATTC TTAAGGAATT TTCAACACGC AGTGTTT-AA horse ---------- ---------- ---------- ---------- ---------- armadillo ---------T TGACTCATTC TTAAGGAATT TCCAACATGT AGTGTTT-AA elephant ---------T TGACTCATTC TTAAGGCATT TCCAGCATGT AGTGTTT-AA tenrec ---------T TGACTCATTC TTAAGGCATT CTCAACATGT AGTGTTT-AA wallaby ---------T TTGCTTTTCC AGAAGGTATT TT-------- --------CA monodelphis ---------T TTTCTCACCC AAGAGGAATT TA-------- --------AA opossum ---------T TTTCTCACCC AAGAGGAATT TA-------- --------TA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GCTTATACAA CTTCACCGTA GTTACC-AAA GAGAC----- -ACCAA---- chimp GCTTATACAA CTTCACCGTA GTTACC-AAA GAGAC----- -ACCAA---- gorilla GCTTATACAA CTTCACCGTA GTTACC-AAA GAGAC----- -ACCAA---- orangutan GCTTATACAA CTTCACCATA GTTACC-AAA GAGAC----- -ACCAA---- gibbon GCTTATACAA CTTCACCATA GTTACC-AAA GAGAC----- -ACCAA---- colobus_monkey GCTTATACAA CTTCACCATA GTTACC-AAA GAGAC----- -AGCAA---- vervet GCTTATACAA CTTCACCATA GTTACC-AAA GAGAC----- -ACCAA---- baboon GCTTATACAA CTTCACCATA GTTACC-AAA GAGAC----- -ACCAG---- macaque GCTTATACAA CTTCACCATA GTTACC-AAA GAGAC----- -ACCAG---- dusky_titi GCTCATCCAA CTTCACCATA GTTACC---A AAGAC----- -ACCAA---- owl_monkey GCTCATCCAA CTTCACCATA GTTACC-AAA GAGAC----- -ACCAA---- squirrel_monkey GCTCATCCAA CTTCACCATA GTTAAC--AA GAGAC----- -ACCAA---- marmoset GCTCATCCAA CTTCACCGTA GTTACC-AAA GAGAC----- -ACCAA---- galago GCTCATCCAA CTTCACCATA GTTACC-AAA GAGAC----- -ACCAC---- mouse_lemur GCTCATCCAA CTTCACCATA GTTACC-AAA GAGAC----- -ACTAC---- lemur GCTCATCCAA CTTCACCATA GTTACC-AGA GAGAC----- -ACTAC---- rabbit GCTCATCCTA CTTCTCCATG GTTACC-AAA GAGAC----- -ATCAG---- st_squirrel ACTCATCTGA CTTCACCATG GTTACC-AAA AAGAC----- -ACCAC---- guinea_pig ACTCATACAG ATTCACCATG GTTACC-AAA A--------- -GCTGC---- rat GCTCTTCCAA CTTCACTATG GTAACC-AAA GAGAC----- -ACCAC---- mouse ---------- ---------- ---------- ---------- ---------- hedgehog GTTCATCTAA CTTCACTATG GTAACT-GAA GAGAC----- -ATCAC---- shrew ACTCATCCAA CTTCACCATA GTTACC-AAA GAGACATCAA GATCAC---- rfbat GCTCATCCAA CTTCACCATG GTTACC-AAC GAGAC----- -ACCAC---- cpbat ---------- ---------- ---------- ---------- ---------- cat GCTCATCCAG CTTCACCATG GTTACC-AAA GAGAC----- -ACCAT---- clouded_leopard GCTCATCCAG CTTCACCATG GTTACT-AAA GAGAC----- -ACCAT---- ferret GCTCATCCAG CTTCACCATG GTTACC-AAA GAGAC----- -ACCAT---- dog GCTCACCCAA CTTCACCATG GTTACC-AAA GAGAC----- -TCCAT---- pig ACTCATCCAA CTTCACCATG GTTACC-AAA GAGAC----- -ACCAC---- muntjak_indian GCTCATCCAA CTTCACCATG GTTACC-AAA GAGAC----- -ACCAC---- sheep GCTCATCCAA CGTCACCATG GTTACC-AAA GAGAC----- -ACCAC---- cow GCTCATCCAA CTTCACCATG GTTACC-AAA GAGAC----- -ACCAC---- horse ---------- ---------- ---------- ---------- ---------- armadillo GCTTGTCCAA CTTCACCATA GTTACT-AAA GAGA------ ---------- elephant ACTCATCCAA CGTCGCCATG GTTACT-AAA GAGAC----- -ACTAC---- tenrec GTTCATCCAA CTTCACCATG GTTACTAAAA AAGAC----- -ACCAC---- wallaby GTTCATCCAA TCAGACGATG GTTAGT-AGG GAGAA----- ----AA---- monodelphis GTTCATCCAA TTTGGCCATG GTTACT-AGG GAGAA----- ----AA---- opossum GTTCATCCAA TTTGGCCATG GTTACT-AGG GAGAA----- ----AA---- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ------TCTT tetra ---------- ---------- ---------- ---------- ------TCTT human ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- chimp ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- gorilla ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- orangutan ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- gibbon ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- colobus_monkey ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----C----- vervet ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----C----- baboon ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----C----- macaque ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----C----- dusky_titi ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- owl_monkey ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- squirrel_monkey ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- marmoset ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- galago ---CACCCAA GAGCACATCT GAACTTGTTT GT-T------ ----TT---- mouse_lemur ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----TT---- lemur ---CACCCAA GAGCATATCT GAACTTGTTT TT-T------ ----TTTTTC rabbit ---CACCCAA GAGCATATCT CAACTTGTCT TT-T------ --TTC----- st_squirrel ---CATCCAA GAGCATATCT GAACTTGTTC TT-A------ ---------- guinea_pig ---CACCCAG GAGCATACCT GAACTTGTTT TA-A------ ---------- rat ---CACCCAA GAGCACATCA GAACTTGCTT TT-GTTTTGT TTTTT----- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---CACCCAA GAACATATCT GAACTTGTTT TT-T------ ----C----- shrew ---CACCCAA GAACATATCT GAACTTGTCT TT-T------ ----C----- rfbat ---CACCCAA GAGCATATCT GAACTTG-TC TT-T------ ----T----- cpbat ---------- ---------- ---------- ---------- ---------- cat ---AACCCAA GAGCATATCT GAACTTGT-- ---------- ---------- clouded_leopard ---AACCCAA GAGCATATCT GAACTTGT-- ---------- ---------- ferret ---AACCCAA GAGCATATCT GAACTTGT-- ---------- ---------- dog ---AACCTAA GAGCATATCT GAACTTGT-- ---------- ---------- pig ---AGCCCAA GAACATATAT GAACTTGT-- ---------- ---------- muntjak_indian ---AGCACAA GAGCATATCT GAACTTGTCT TT-T------ ----T----- sheep ---AGCCCAA GAGCACATCT GAACTTGTTT TT-T------ ---------- cow ---AGCCCAA GAGCATATCT GAACTTGTTT TT-T------ ----T----- horse ---------- ---------- ---------- ---------- ---------- armadillo ---CACCCAA GAGCATATCT AAACTTGTTT TT-T------ ----T----- elephant ---CACCCAA TGGCATATCT GAACTTGTTT TTCT------ ----T----- tenrec ---CACCCAA GTGCATATCT GAACTTGTGT TT-T------ ----T----- wallaby ---TCTTCAG GAGCAGATTT CAGCTTGTGC TT-T------ ----C----- monodelphis ---CACCCAG GAGCATATTT CAACTTGTGT TT-T------ ----C----- opossum ---CACCCTG GAGCATATTT CAACTTGTGT TT-T------ ----C----- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu CAGGACTTAG ATGCAGAACT GAGCTTGT-- ---------- ---------- tetra TGTTACTTAG GTGCAGAACT GAGCTTGT-- ---------- ---------- human CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G chimp CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G gorilla CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G orangutan CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G gibbon CGTATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G colobus_monkey CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGA- ---------- vervet CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGA- ---------- baboon CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGA- ---------- macaque CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGA- ---------- dusky_titi CATATATTTA CTTGGCTAAT TA--TTTTTT G--TTCTGAA TG-------G owl_monkey CATATATTTA TTTGGCAAAT TA--TTTTTT G--TTTTGAA TG-------G squirrel_monkey CATATATTTA CTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G marmoset CATATATTTA CTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G galago CATGTATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TGCATGTACG mouse_lemur CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G lemur CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G rabbit GTTCTGTTCA TTTGGCTAAT TA--TTTTAT G--TTTTGAA TG-------G st_squirrel CACATTTTCT TTTGGCTAAT TATTTTTTTT G--TTTTGAA TG-------G guinea_pig -ATGTATTTA TTTGACTAAT T---TTTTTT G--TTTTGAT TG-------G rat CATATATTTA TGTGGATAAT TA--TTCTTT G--TTTTGAA TG-------G mouse ---------- ---------- ---------- ---------- ---------- hedgehog TATATATTTA TCTAGCTAGT TC--ATTTTT G--TTCTGAG TG-------G shrew CATGTATTTA CTTAGCTGAT TC--TTTTAT GGATTTTGAA CA-------G rfbat CATATATTTA TTTAGCTAAT TA--TTTTTT TT-TTTTGAA TG-------G cpbat ---------- ---------- ---------- ---------- ---------- cat ---------A TTTAGCTAAT TA--CTTTAA G--TTTTGAA TG-------G clouded_leopard ---------A TTTAGCTAAT TA--CTTTAA G--TTTTGAA TG-------G ferret ---------A TTTAGCTAAT TA--TTTTTT G--TTTTGAA CA-------G dog ---------A TTTAGCTAGT TA--TTCTTT G--TTTTGAA TG-------G pig ---------- ---------- ----TTTTTT A--TTTTAAA TG-------G muntjak_indian CATGTATTTA TTTAGCTAAG TA--TTTTTT G--TTTTGAA TG-------G sheep CATGTATTTA TTTAACTAAG TA--TTTTTT G--TTTTGAA TG-------G cow CATGTATTTA TTTAGCTAAG TA--TTTTTT G--TTTTGAA TG-------G horse ---------- ---------- ---------- ---------- ---------- armadillo CATATATTTA TTTGGCTAAT TA--TTTTTT G--TTTTGAA TG-------G elephant CATATATTTA TTTGACTAAT TA--TTTTTT G--TTTTGCA TG-------T tenrec CATATATTTG CTTTGCTAAT TC--TTTTTT G--TTTTGAG TG-------G wallaby TGCTT----- TTTGCTCAAT TA--TTTTTT C--CTTAAAA GA-------C monodelphis TGCAA----- TTTGCTCAAT TA--TTTTTT T--CTTAGAA GA-------C opossum TGC------- TTTGTCCAAT TA--TTTTTT T--CTTAGAA AA-------T platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CATCT---TA TGATGACATT AGCAACACTT CTT---AAAA TTCCCTCTTg chimp CATCT---TA TGATGACATT AGCAACACTT CTT---AAAA TTCCCTCTTg gorilla CATCT---TA CGATGACATT AGCAACACTT CTT---AAAA TTCCCTCTTg orangutan CATCT---TA TGATGACATT AGCAACACTT ATC---AAAA TTCCCTCTTg gibbon CAT------- -GATGACATT AGCAACACTT ATT---AAAA TTCCCTCTTg colobus_monkey ---------- --ATGACATT AGCAACACTT ATT---AAAA TTCCCTCTTg vervet ---------- --ATGACATT AGCAACACTT ATT---AAAA TTCCCTCTTg baboon ---------- --ATGAAATT AGCAACACTT ATT---AAAA TTCCCTCTTg macaque ---------- --ATGACATT AGCAACACTT ATT---AAAA TTCCCTCTTg dusky_titi CATTT---TA TGATGACATT AGCAGACCTT GCT---AAAA TCCCCTCTTg owl_monkey CATTT---TA TGATGACATT AGCAACACTT GTT---AAAA TCTCCTCTTg squirrel_monkey CATTT---TA TGATGACATT AGCAACACTT ------AAAA TCTCCTCTTc marmoset CATTT---TA TGATGACATT AGCAACGCTT GTT---AAAA TCTCCTCTT- galago CATTT----- --ATGACATT AGCAATACTT ACT---AAAA TTCCATCTTg mouse_lemur CATTT---TA TGCTGACATT AGAAATACTT ATA---AAAA TTCTCTCCT- lemur CATTT---TA TGCTGACATT AGCAATACTT ATT---AAAA TTCTCTCCT- rabbit CATTT---TA TCCTGACATT ATCAACACTT A-T---GAAA TTCCCTCTTc st_squirrel CATTT---TA CGCTGACATT AAACATACTT ACT---ACAA TTCCCTTTTa guinea_pig CATTT---TA CACTGACATT ---------- ---------- ---------- rat CATTT---TA -AATGACATT ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CATTT---TA TGCTGACATT ---------- ---------- ---------- shrew TA-TT---TA TGTTGATGCT ---------- ---------- ---------- rfbat CATTT---CA TGCTGATGTT AGCAAT-CTT ATT---AAAA TTTCCTCTT- cpbat ---------- ---------- ---------- ---------- ---------- cat CATTT---TA TTCTGACATT AGCAATACTT ATT---AAAA TTCCCTCTT- clouded_leopard CATTT---TA TTCTGACATT AGCAATACTT ATT---AAAA TTCCCTCTT- ferret CATTT---TA TGCTGACATT AGCAATACTT ATA---AAAT TGCTCT--T- dog CATTT---TA TGCTGACATT AGCAATACTT ACT---AAAA TTCCCT---- pig CATTT---TA TGCTGACATT AGAAACACTT ACT----AAA TTCCCTCTT- muntjak_indian CATTT---TA TGTTGACATT ---------- ---------- ---------- sheep CATTT---TA TGCTGACATT AGCAATACTT ATTTTAAAAA TTCCCTCTT- cow CATTT---TA TGCTGACATT AGCAATACTT ATTTTAAAAA TTCCCTCTT- horse ---------- ---------- ---------- ---------- ---------- armadillo CATTT---TA TGTTGACGTT AGCAATACTT ATT---AAAA TTCCCTCTTg elephant CATTT---TA TACTGACATT ---------- ---------- ---------g tenrec CATTT---TA TAGTGACATT ---------- ---------- ---------G wallaby TATTTAGTGA TGCTGACATT ---------- ---------- ---------- monodelphis TATTTAGTGA TACTGACATT ---------- ---------- ---------- opossum TATTTAGTAA TGCTGACATT ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- AGTAATGC-T GTT---AAAA TGCTAT---- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human gta--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-t- chimp gta--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-t- gorilla gta--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-t- orangutan gta--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-t- gibbon gta--g-ac- -aaattat-t tgtaatattg tttgcagttt ttc--ta-t- colobus_monkey gta--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-ta vervet gta--a-ac- -aaattct-t tgtcatattg tctgcagttt ttc--ta-ta baboon gta--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-ta macaque gta--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-ta dusky_titi gta--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-tc owl_monkey gta--a-ac- -aaattct-t tgtgatattg tttgcagttt ttc--ta-tc squirrel_monkey ata--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ta-tc marmoset gca--a-ac- -aaattct-t tgtaatattg tttgcagttt ttc--ca-t- galago gaa--acaa- -aaattct-t gatagtattg tttgaaattt ttc--tg-ta mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit gta--a-gca gaaactct-t tgtta---tg cttgaaattt ttc--cc-ta st_squirrel gta--a-aca gaaattct-t tgtaatactg tttgcaattt ttt--tcaca guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo gta--a-aca gaaattct-t tgcaatattt tttacaagtt ttc--tg-ta elephant gta--a-aca gaaa-tct-t tgtaat-ttt tttgcagttt ttc--ta-ta tenrec GCACCA-TTA TAGA-TTT-T TGT------- CCCACAGTTT TTC--TC-TG wallaby -TG--A-AG- -TAATTATAT TCTTACTTTT AATTGACTGT CACTTTG-TT monodelphis -TG--A-GT- -ACACTATAT TGTTAGTCTA ATTACACTGT CAC--TG-TT opossum -TG--A-GT- -TCACTATAC TGTTAGGTTA ATTAAACTGT TAT--TG-TT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human agcctcaaat tatttc--aa aatacaa--a GTGAGGTGCC AAGGGCAACA chimp agcctcaaat tatttc--aa aatacaa--a GTGAGGTGCC AAGGGCAACA gorilla agcctcaaat tatttc--aa aatacaa--a GTGAGGTGCC AAGGGCAACA orangutan agcctcaaat tatttc--aa aatacaa--a GTGAGGTGCC AAGGGCAACA gibbon agcctcaaat tatttc--aa aatacaa--a GTAAGGTGCC AAGGGCAACA colobus_monkey agcctgaaat tatttc--aa aatacaa--a GTGAGGTGCC AAGGGAAACA vervet agcctgaaat tatttc--aa aatacaa--a GTGAGGTGCC AAGGGAAACA baboon agcctgaaat tatttc--aa aatacaa--a GTGAGGTGCC AAGGGAAACA macaque agcctgaaat tatttc--aa aatacaa--a GTGAGGTGCC AAGGGAAACA dusky_titi agcctgaaat catttc--aa aatacaa--a TTGAGGTGCC AAGGGAAACA owl_monkey agcctgaaat catttc--aa aatacaa--a TTGAGGTGCC AAGGGAAACA squirrel_monkey agcctgaaat tatttc--aa aataaaa--a TTGAGGTGCC AAGGAAAACA marmoset ---ctgaaat tatttc--aa aatacaa--a TTGAGGTGCC AAGGGAAACA galago agtctgaaat tacttt--aa aatacaa--a GTGAGGTGCC AAGGGAAACA mouse_lemur ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA lemur ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA rabbit agtctgaaat tatttt--aa gagacaa--a GTGAGGTGCC AAGGCAAACA st_squirrel agctttaaac tatttt--aa agtacaa--a G-GGGGTGCC AAGGGAAACA guinea_pig ---------- ---------- ---------- --GAGATGCC AAGGGAAACA rat ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- --GTGGTGCC AAAGGAAACA shrew ---------- ---------- ---------- --TAGATGCC AAGGGAAACA rfbat ---------- ---------- ---------- --GAGGTGCC AAAGGAAACA cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA clouded_leopard ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA ferret ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA dog ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA pig ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA muntjak_indian ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA sheep ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA cow ---------- ---------- ---------- --GAGGTGCC AAGGGAAACA horse ---------- ---------- ---------- ---------- ---------- armadillo agtctgaaat catttt--aa aataaaa--a GTGAGATGCC AAGGGAAACA elephant agtctgaaat tatttt--ca aataaaa--a GTAAGATGCC AAGGGAAACA tenrec ACTC--AAAT TATTTT--CA AATAGAA--A GTGAGATGCC AAGGGAAACA wallaby T--CAAGAGA AGTCTCCTGA AGCAGGAGTA AGGAGATGCC AAAGGAAACA monodelphis A--CAAGAGA TATTTC--AA AGTAGGAGTA ATAAGGTGCC AAGGGAAACA opossum A--CAAGAGA TATTTC--AA AATAGGAGCA ATAAGGTGCC AAGGGAAATA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- --AAG----- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TACTTCCATT ACGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG chimp TACTTCCATT ACGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG gorilla TACTTCCATT ACGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG orangutan TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG gibbon TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG colobus_monkey TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG vervet TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG GTTTTAAAGG baboon TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG macaque TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG dusky_titi TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG owl_monkey TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG squirrel_monkey TACTTCCATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG marmoset TACTTCTATT ATGAAGTGTT TCTAACAAAA TGTTTTGGAG ATTTTAAAGG galago TACTTCCATT ATGAAGTGTT TTTAAC-AAA TGTTTTGGAA ATTTTAAAGG mouse_lemur TACTTCCATT ATGAAGTGTT TCTAAC-AAA TGTTTTGGAA GTTTTAAAGA lemur TACTTCCATT ATGAAGTGTT TCTAAC-AAA TGTTTTGGAA GTTTTAAAGA rabbit TACTTAGATT ATGAAGTGTT TCTAAC-AAA TGCTTT-GAG GTTTTAAAGG st_squirrel GACTTACATT ATGAAGTGGT TCTAAC-AAA TGTTTTGGAG GTTTTAAAGG guinea_pig TACTTACACT ATGAAGTGTT TCTAAC-AAA TGTTTGGGAG ATTTTAAAGG rat AATCCGCATT ATGAAGTGTT TCTAAC-AAA TGTTTTCGAG ATTGTAAAGG mouse ---------- ---------- ---------- ---------- ---------- hedgehog TACTTATATT ATGAAGTGTT TCTAAC-AAA TGTTTTGGAG ATTTTAAAGG shrew AACTTACATT ATAAAGTGTT C--AAC-AAA TGTTTTGGAG ATTTTAAAGG rfbat TACTTGTATT ATGAAGTGTT TCTAAC-AAA TGTTTTGGAG ATTTTAAGGG cpbat ---------- ---------- ---------- ---------- ---------- cat TACTTATATT ATGAAGTGTT TCTAAC-AAA TGTTTTGGAG ATTTTAAAGG clouded_leopard TACTTATATT ATGAAGTGTT TCTAAC-AAA TGTTTTGGAG ATTTTAAAGG ferret TACTTATATT ATGAAGT-TT TCTAAC-AAA TGTTTTGGAG ATTTTAAAGG dog TACTTACATT ATGAAGT-TT TCTAGC-AAA TGTTTTGGAG ATTTTAAAGG pig TTCTTACGTT ATGAACTGTT TCTAAC-AAA TGTTTTGGAG ATTTTAAAGG muntjak_indian TACTTACGTT ATGAACTGTT TCTAAC-AAA TGTTTTGGAG ATTTTAAAGG sheep TACTTACGTT ATGAACTGTT TCTAAC-AAA TGTTTTGGAG ATTTTAAAGG cow TACTTACGTT ATGAACTGTT TCTAAC-AAA TGTTTTGGAG ATTTTAAAGG horse ---------- ---------- ---------- ---------- ---------- armadillo TACTTATATT ATGAAGTGTT TCTAAC-AAA TGTTTGGGAG GTTTTAAAGA elephant AACTTACAAA ATGAAATGTT TCTAAC-AAA TGTTTTGGAG TTTTTAAAGT tenrec TACTTCCATT ATGAAGTGTT TCTAAC-AAA TGTTTTGACT ACTTTAAAGG wallaby TGCTTACATT ATGAAGTATT CTTAAC-AAA TATTTGTGAA TATAAAAAGG monodelphis TACTTATATT ATGAAGTATT TCTAAC-AAA TATTTGGGAA GTTTAAAAGG opossum TTCTTATATT ATGAAGAATT TCTAAC-AAA TATTTGGGAA ATTAAAAAGG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -GGCAGCTT- -TCTAAATAT TTTT--CCT- --GAAAGTCA ------GCAC chimp -GGCAGCTT- -TCTAAATAT TTTT--CCT- --GAAAGTCA ------GCAC gorilla -GGCAGCTT- -TCTAAATAT TTTT--CCT- --GAAAGTCA ------GCAC orangutan -GGCAGCTT- -TCTAAATAT TTTT--CCT- --GAAAGTCA ------GCAC gibbon -GGCAGCTT- -TCTAAATAT TTTT--CCT- --GAAAGTCA ------GCAC colobus_monkey -GGCAGCTT- -TCTAAATAG TTTC--CCT- --GAAAATCA ------GCAC vervet -GGTAGCTT- -TCTAAATAT TTTC--CCT- --GAAAATCA ------GCAC baboon -AGTAGCTT- -TCTAAATAT TTTC--CCT- --GAAAATCA ------GCAC macaque -AGTAGCTT- -TCTAAATAT TTTC--CCT- --GAAAATCA ------GCAC dusky_titi -GGCAGCTT- -TCTAAATAG TTT---ACT- --GAAAACCA ------GCAC owl_monkey -GGCAGCTT- -TCTAAATAG TTT---CCT- --GAAAACCA ------GCAC squirrel_monkey -GGCAGCTT- -TCTAAATAG TTT---CCT- --GAAAACCA ------GCAC marmoset -GGCAGCTT- -TCTAAATAG TTTT--CCT- --GAAAACCA ------GCAC galago -AGCAGCTT- -TCTAAATAT GTT---TCC- --GAAAACGA ------GCAC mouse_lemur -GGCAGCTT- -TCTAAATAT GTT---TCT- --GAAAACCA ------GCAC lemur -GGCAGCTT- -TCTAAATAT GTC---TCT- --GAAAACCA ------GCAC rabbit -GGCAGCTT- -TTGAGATAT CTTT---CT- --GAAAATCA ------GCAC st_squirrel -GGTAGCTTT CTCTAAATAT TTTTTTTCT- --GAAAACCA ------GCAC guinea_pig -GGTAGCTT- -TCTAAATAT TTTTTTCCT- --GAAAATCA ------GCAC rat -GGTGGCTT- -TCTAAATAT CTT----CT- --GAAAGTCA ------GCA- mouse ---------- ---------- ---------- ---------- ---------- hedgehog -GGCAGCTT- -TCTAAATAC TTT---CTTT CTGAAAACAG ------GTCC shrew -GGCAGCTT- -TCTAAATAT TTC---C--- --AGAAATAA TAAACAGTAT rfbat -GGCAGATT- -TCTAAATAT CTT---CTT- --GCAAACCA ------GCAC cpbat ---------- ---------- ---------- ---------- ---------- cat -GGCAGCTT- -TCTAAATAT CTT---CCT- --GAAAACCA ------GCAC clouded_leopard -GGCAGCTT- -TCTAAATAT CTT---CCT- --GAAAACCA ------GCAC ferret -GGCAGCTT- -TCTAAATAT CTT---CCT- --GAAAACCA ------GCAC dog -GGCAGCTT- -TCTAAATAT CCT---CCT- --GAAAACCA ------GCAC pig -GACAGCTT- -TCTAAATAT CTT---TCT- --GAGA---- --------GG muntjak_indian -GACAGCTT- -TCTAAATAT CTT---TCT- --GAAA---- --------AC sheep -GACAGCTT- -TCTAAATAT CTT---TCT- --GAAA---- --------AC cow -GACAGCTT- -TCTAAATAT CTT---TCT- --GAAA---- --------AC horse ---------- ---------- ---------- ---------- ---------- armadillo -GGCAGCTT- -TCTAAATAT CTT---TCT- --GAAAACCA ------GCAC elephant -AGCAGCTT- -TCTAAATAT CTT---CTT- --GAAAACCA ------GCAC tenrec -GGCAG-TT- -TCTAAATAG CT-------- --GACAGCCA ------GCAC wallaby AAGCAATTT- -GCTAAATAT CTC---TCT- --GAAAACCA ------TCAC monodelphis AGGCAACTT- -GCTAAGTAT CTT---TCT- --GAAGACCA ------GCAC opossum AGGCAACTT- -GTTAAATGT CTC---TCT- --GAAAACCA ------GCTC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- CTA---GCT- --GG------ ------GGAG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA chimp AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA gorilla AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA orangutan AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA gibbon AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA colobus_monkey AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA vervet AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA baboon AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA macaque AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA dusky_titi AGCTGCTGAA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA owl_monkey AGCTGTTGCA --ATGCCC-C TTTATCA-GT GGTCTTTGA- TTTTGAAATA squirrel_monkey AGCTGTTGCA --ATGCCC-C TTTATCA-AT GGTCTTTGA- TTTTGAAATA marmoset AGCTGTTGCA --ATGTCC-T TTTATCA-AT GGTCTTTGA- TTTTGAAATA galago AGCTGTTGTG --ATGCCC-C TTTATTA-AT GGTCTGCAA- TGCTGAAATA mouse_lemur AGCTGTTGCG --ATGCCC-C TTTATTC-AT GGTCTTTGG- TTTTGAAATA lemur AGCTGTTGTG --ATGCCC-C TTTATTA-AT GGTCTTTAG- TTTTGAAATA rabbit AGATGCTACA --ATGCCC-C ATTTTCT-AT GGTCTTTGA- TTTTGAAATA st_squirrel AGCTGTTGCA GGATGCCC-T TTTGTCA-AT GGTCTTTGA- TTTGGAAATA guinea_pig AGCTGTGTGG TGATGCTT-G CTCATCA-AT TGTCTTTGA- TTTTGATGTC rat ---------- --ATGTAC-A TTTATCA-GT GGTCTTTGA- TTTTGAAATA mouse ---------- ---------- ---------- ---------- ---------- hedgehog AGCTACTCTA --GTGTCC-A TTTATCA-A- GGTCTTTGG- CTCTGAAAT- shrew TGATGCTGCG --ATACCC-A TTTATCA-AT GGTCCTTGA- AGCTGATAT- rfbat AGCTGTTGCA --ATGTCC-G TTTATCA-AT GGTCTTTGA- TTCTGAAAT- cpbat ---------- ---------- ---------- ---------- ---------- cat AACTGTTGCA --AGGCCC-A TTTATCA-AT AGTCTTTGG- TTTTGAAAT- clouded_leopard AGCTGTTGCA --AGGCCC-A TTTATCA-AT AGTCTTTGG- TTTTGAAAT- ferret AGCTGTTGCA --AGGCCC-A TTTATCA-AT GGTCTTTGG- TTTTGAAAT- dog AGCTGTTGCA --AGGCCT-G TTTATCT-AC GGTCTTTGAT TTTTGAAAT- pig AGCTGTTGCA --ATGCCC-A ATTATCA-AT GGTCTTTGA- TTTTGAAAT- muntjak_indian AGCTGTTGCA --GTGCCC-A GTTATCTAAT GGTCTTTGA- TTTTGAAAT- sheep AGCTGTTGCA --ATGCCC-G GTTATCT-AT GGTCTTTGG- TTTTTAAAT- cow AGCTGTTGCA --ATGCCC-G GTTATCT-AT GGTCTTTGG- TTTTTAAAT- horse ---------- ---------- ---------- ---------- ---------- armadillo AGCTGTTGCA --ATGCCCAA TTTATCA-AT GGTCTTTGA- TTTTAAAATA elephant AGCTGTTGCA --ATGCCC-G TTTATCA-GT GGTCTTTGA- TTTTAAAATA tenrec AGCTGTTGCA --ATGCCC-G TTGATCA-AT GGTCGTTGA- TTTTAAAATA wallaby AGCTGTTGCA --ATGCCC-A TTTATCA-AT GCTCTTTAG- CTTTTTAATG monodelphis AGCTGTTGGA --ACGCCC-A TTTATCA-AT GCTCTTGGG- CCTTTTAATG opossum AGTTGTTGTA --ACACCC-A TTTATCA-AT GCTCTTGGG- CATTTTAATG platypus ---------- ---------- ---------- ---------- ---------- chicken GTTTATTGAA --C------- --TATAA-AT GGTCTTTGC- ---TGAAAA- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT chimp TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT gorilla TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT orangutan TATGCACT-G TTAATGTAA- TTTTGGT--- -CT-TCTTTA GCAGA-ATTT gibbon TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT colobus_monkey TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT vervet TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT baboon TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT macaque TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT dusky_titi TATGCACT-G TTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT owl_monkey TATGCACT-G TTAATATAA- TTTTGGC--- -TT-TCTTTA GCAGA-ATTT squirrel_monkey TATGCACT-G TTAATATAA- TTTTGGC--- -TT-TCTTTA GCAGA-ATTT marmoset TATGCACT-G TTAATATAA- TTTTGGC--- -TT-TCTTTA GCAGA-ATTT galago TATGCATT-G CTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT mouse_lemur TATGCATT-G CTAATATAA- TTTTGGC--- --T-TCTTTA GCAGA-ATTT lemur TACGCATT-G CTAATATAA- TTTTGGC--- -CT-TCTTTA GCAGA-ATTT rabbit CATGCATT-G TGAATACAA- TTTTGGC--- -AT-TCTTCA ACAGA-ATTT st_squirrel TACACATT-A TTAATATAA- TTTTGAC--- -TT-TCTCTA ACAGA-ATTT guinea_pig TATGCTTT-G TTCTTAAAAT TTTTTGG--- -AT-TTTTAA ATAGA-ATTT rat TATGCAAT-T TTATTGTAA- TTTTGGC--- -AC-CCTGTA GCAGA-ATTT mouse ---------- ---------- ---------- ---------- ---------- hedgehog -ATGCACT-G TTAATATAC- TTTTGGC--- -AT-TCTTTA ACAAA-ATTT shrew -GTGCATT-G TTAATAGAG- TTTTAGC--- -GT-TCTTTA GCAGA--TTT rfbat -GGGCCCT-G TTAATGTAA- CTTTGGC--- -AT-TCTCTA ACAGA--TTA cpbat ---------- ---------- ---------- ---------- ---------- cat -GTGCATT-G CTAATATAA- TTTTGGC--- -AT-TCTTTA ACAGA--TTT clouded_leopard -GTGCATT-G CTAATATAA- TTTTGGC--- -AT-TCTTTA ACAGA--TTT ferret -GTGCCTT-G TGAATATAA- TTTCAGC--- -AT-TCTTTT ACAGA--TTT dog -GGGCATT-G TGAATATGA- TTTTGGC--- -AT-TCTCTA ACAGA--TTT pig -GTGCATT-G TTAATATAA- TTTTGGC--- -AT-TCTTTA GCAGA--GTT muntjak_indian -GTGCATT-G TTAATATAA- TTTTGGC--- -AT-TCTTTA ACAGA--TTT sheep -GTGCATT-G CTGATATAA- TTTTGGC--- -AT-TCTTTA ACAGA--TTT cow -GTGCATT-G TTAATATAA- TTTTGGC--- -AT-TCTTTA ACAGA--TTT horse ---------- ---------- ---------- ---------- ---------- armadillo AATGCTTT-A TTAATATAA- TTTTGGC--- -AT-TTCTTA ACAGA-ATTC elephant CATGTTTT-G TTAATACAA- TTTTTAATAT AAT-TCCTTA GCACA-ATTT tenrec CATGCTTT-G TGAATATAA- TTTTGGC--- -AT-TCCTGA ACAAA-ATTT wallaby TATACTTT-A TTGTCATCT- TTCTGGT--- -GT-TCCCAT GAAGG-ATTT monodelphis TATACTTT-A TTGTCATCT- TTCTGGT--- -GC-TCCTGT GAAGA-ATTT opossum GATACTTT-A TTGTCATCT- TTCTGGT--- -GC-TCCCAT GAAGA-ATTT platypus ---------- ---------- ---------- ---------- ---------- chicken -CCTTTTT-A TTTTCTTCA- TTTTGAC--- -AT-TCCGAT ACAAAAACTG fugu ------TC-A TTTTCTCCA- CATTAAC--- -CTTTCCAAT GATGA-TGTT tetra ------TCCG TTTTCCCTG- CGTTCAC--- -CTTTCTGTC GCTGT-TGTT human CAAAGGGG-- AACCAAAGGT TTATA---TT TATAAAG-TT TATAATCATT chimp CAAAGGGG-- AACCAAAGGT TTATA---TT TATAAAG-TT TATAATCATT gorilla CAAAGGGG-- AACCAAAGGT TTATA---TT TATAAAG-TT TATAATCATT orangutan CAAAGGGG-- AACCAAAGGT TTATA---TT TATAAAG-TT TATAATCATT gibbon CAAAGAGG-- AACCAAAGGt ttata---tt tataaaa-tt tataatCATT colobus_monkey CAAAGGGG-- AATCAAAGGT TTATA---TT TATAAAG-TT TATAATCATT vervet CAAAGGGG-- AATCAAAGGT TTATA---TT TATAAAG-TT TATAATCATT baboon CAAAGGGG-- AATCAAAGGT TTATA---TT TATAAAG-TT TATAATCATT macaque CAAAGGGA-- AATCAAAGGT TTATA---TT TATAAAG-TT TATAATCATT dusky_titi CAAAGGGG-- AATCAAAAGT TTATG---TT TATAAAG-TT TATAATCATT owl_monkey CAAAGGGG-- AATCAAAGGT TTATG---TT TATAAAG-TT TATAATCATT squirrel_monkey CAAAGGGG-- AATCAAAGGT TTATG---TT TATAAAG-TT TATAATCATT marmoset CAAAGGGG-- AATCAAAGGT TTATG---TT TATAAAG-TT TATAATCATT galago CAAAGAGG-- AATCCACGGT TTATC---TT CGTAAAG-TT TATAATCATT mouse_lemur CAAAGAAG-- AATCAAAGGT TTATC---TT TATAAAA-TT TATAATCATT lemur CAAAGAGG-- AATCAAAGGT TTATC---TT CATAAAA-TT TATAATCATT rabbit CCAAGTGG-- AATTAAAGGT TTATG---TT TGTAAGG-TT TATAATCATT st_squirrel CAAAGTGG-- AATCAAAGGT TTATG---TT TATAAAG-TT TATAATCATT guinea_pig TTAAGTGG-- AATCAAAGGT TTATC---TT TATAAAG-TT TATAATCATT rat CAAAGTAG-- AATCAAAGGT TTATC---TT TATAAAG-TT TATAATCATT mouse ---------- ---------- ---------- ---------- ---------- hedgehog CAAAGTGG-- AATCAAAGGT TTATG---TT TATAAAG-TT TATAATCATT shrew CAAAGTGG-- AATCAAAGGT TTATG---TT TATAAGC-TT TATAATCATT rfbat CCAAGTGG-- AATCAGAGGT TTATG---TT TATAAAG-TT TATAATCACT cpbat ---------- ---------- ---------- ---------- ---------- cat CAAAGTGG-- AATCAAAGGT TTATG---TT TATAAAG-TT TATAATCATT clouded_leopard CAAAGTGG-- AATCAAAGGT TTATG---TT TATAAAG-TT TATAATCATT ferret CAAAGTGG-- AATCAGAGGT TTATG---TT TATAAAG-TT TATAATCATT dog CAAAGTGG-- AATCAGAGGT TTATG---TT TATAAAG-TT TATAATCATT pig CAAAGTGG-- AATCaaaaat ttata---tt tataaag-tt tataatCATT muntjak_indian CAAAGTGG-- AATCAAAGGT TTATG---TT TATAGAG-TT TATATTCGTT sheep CAAAGTGG-- AATCAAAGGT TT-TG---TT TATAGAG-TT TATATTCATT cow CAAAGTGG-- AATCAAAGGT TTATG---TT TATAGAG-TT TATATTCATT horse ---------- ---------- ---------- ---------- ---------- armadillo TAAAGTGG-- AATCAAAGGT TTATG---TT TATGAAG-TT TATAACCATT elephant CAAAGTGG-- AATCAAGGAT TTATG---TT TATAAAG-TT TGTAATCGTT tenrec CAAGGTGG-- AATCAAGGGT TTATA---TT TACAAAG-TT TGTAATCATT wallaby CAAAGGGC-C AGTAAGAGCT TTATG---TT TCTAAAGCTC TCTAATTATT monodelphis CAAAGGGG-T AAGAAGATCT TTATG---TT TATAAAGCTC T--AATCATT opossum CAAAGGGGGC AAGAAGATAT TTATG---TT TATAAAGCTC TCTAATTATT platypus ---------- ---------- ---------- ---------- ---------- chicken CCAAGCAA-- ACTCTGAAGT TTACA---TT TATGAAG-GC TGTAATCATT fugu TAAA--AA-- AAAAAAAGGC TCTTGGACTC CAGCAAG-AT AAGATCCCTC tetra AAAA--AA-- AATAAAAGGC TCTTGGACTC TGGTGAA-AT AAAATCCCTC human CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- chimp CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- gorilla CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- orangutan CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- gibbon CCGCAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- colobus_monkey CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- vervet CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- baboon CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- macaque CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- dusky_titi CCACAAAGTT CAAGATA-TT TGGCAGT--G CTT-----GG G-AAACTTA- owl_monkey CCACAAAGTT CAAGATA-TT TGGCAGT--G CTT-----GG G-AAACTTA- squirrel_monkey CCACAAAGTT CAAGATA-TT TGGCAGT--G CTT-----GG G-AAACTTA- marmoset CCACAAAGTT CAAGATA-TT TGGCAGT--G CTT-----GG --AAACTTA- galago CCACA----- -AAGATG-TT TGGCAGT--G CTT-----GA G-AAACTTA- mouse_lemur CCGCAAAGTT CAAGATG-TT TGGCAGT--G CTT-----GG G-AAACTTA- lemur CCACAAAGTT CAAGATG-TT TGGCAGT--G CTC-----GG GGAAACTTA- rabbit CCACAAAGTT CAAGATG-TT TGGCAGT--G CTT-----GG G-AAACTTA- st_squirrel CCACAAAGTT CAAGAAG-TT TGGCAGT--G CTT-----GG G-AAACTTC- guinea_pig CCACAAAGTT CAAGACA-TT TGGCAGT--G CTT-----GG G-AAACTTA- rat CCACAAAGTT CAAGATG-TT TGGCAGT--G CTT------A G-AGACTTA- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CCACAAAGTT CAAGATA-TT TGGCAGG--G CTG-----GG G-AAACTTA- shrew CCACAAAGTT CAAACAG-TT TGGCAAT--G TCT-----GG A-AAACTGA- rfbat CCAGAAAGTT CAAGACG-TT TGGCAGT--G CTA-----GG G-AAGCTTG- cpbat ---------- ---------- ---------- ---------- ---------- cat CC-CAAAGTT CAAGACGTTT TGGCAGT--G CTT-----GG G-AAATTCA- clouded_leopard CC-CAAAGTT CAAGACGTTT TGGCAGT--G CTT-----GG G-AAATTCA- ferret CCACAAAGTT CAAGACG-TT TGGCAGT--G CTT-----GG GAAAACTTA- dog CTACAAAGTT CAAGCCG-TT TGGCAGT--G CTT-----GG G-AAACTTA- pig CCACAAAGCT CAAGACG-TT TGGCAGT--G CTC-----AG G-AAACTTA- muntjak_indian CCACAAAGTT CAAGATA-TT TGGCAGT--G CTA-----GG GAAAATTTG- sheep CCACAAAGTT CAAGATA-TT TGGCAGT--G CTA-----GG GAAAACTTG- cow CCACAAAGTT CAAGATA-TT TGGCAGT--G CTA-----GG GAAAACTTG- horse ---------- ---------- ---------- ---------- ---------- armadillo CCACAAAGGT CAAGACG-TT TGGCAGT--G CTT-----GG G-AAACTTA- elephant CCACAAAGTT CGAGATG-TT TGGCAGT--G CTGTGCTTGG G-AAACTTA- tenrec CCACAAAGTT CAAGATA-TT TGGCAGT--G CTG-----GG G-AACCTTAC wallaby CCAGTAAGTG CAAGAAG-TT TGGCAGA--A CTT-----GG AAAAACTTA- monodelphis CCACAAAGTT CAAGAAG-TT TGGCAGA--A CTT-----GG AAAAACTTA- opossum CTGCAAAGTT CATGAAG-TT TGGCAGA--A TTT-----GG AAAAACTTA- platypus ---------- ---------- ---------- ---------- ---------- chicken CCATGAAGTT CAAGAAA-TC TGGCAGT--G ATC-----TG G-AAAACTG- fugu CCCCAAAGT- --------TT TGGCAAGCAG CAA-----GA A-CAAAGTT- tetra CCCCACAGA- --------TT TGGCAAGCAG CAA-----GA A-CAACGTT- human AA-------- AACAGTAAT- AAAAGGTTAC TGCGAGGAAT TCAAAGCTGC chimp AA-------- AACAGTAAT- AAAAGGTTAC TGCGAGGAAT TCAAAGCTGC gorilla AA-------- AACAGTAAT- AAAAGGTTAC TGCGAGGAAT TCAAAGCTGC orangutan AA-------- AACAGTAAT- AAAAGGTTAC TGAGAGGAAT TCAAAGCTGC gibbon AA-------- AACAGTAAT- AAAAGGTTAC CGCGAGGAAT TCAAAGCTGC colobus_monkey AA-------- AACAGTAAT- AAAAGGTTAC TGCGAGGAAT TCAAAGCTGC vervet AA-------- AACAGTAAT- AAAAGGTTAC TGCGGGGAAT TCAAAGCTGC baboon AA-------- AACAGTAAT- AAAAGGTTAC TGCGGGGAAT TCAAAGCTGC macaque AA-------- AACAGTAAT- AAAAGGTTAC TGCGGGGAAT TCAAAGCTGC dusky_titi AA-------- AACAGTAAT- AAAAGGTTAC TGCGAGGAAT TCAAAGCTGC owl_monkey AA-------- AACAGTAAT- AAAAGGTTAC TGCGAGGAAT TCAAAGCTGC squirrel_monkey AA-------- AACAGTAAT- AAAAGGTTAC TGCGAGGAAT TCAAAGCTGC marmoset AA-------- AACAGTAAT- AAAAGGTTAC TGCGAGGAAT TCAAAGCTGC galago AA-------- AACAGTAAT- AAAAGGTTAC CAGGAGGAAT CCAAAGCTGC mouse_lemur AA-------- AACAGTAAT- AAAAGGTTAC CAGGAGGAAT TCAA-GATGC lemur AA-------- AACAGTAAT- AAAAGGTTAC CAGGAGGAAT TCAAAGCTGC rabbit AA-------- AAGAGTAAT- AAAAGGTTTC CATGAGGAAT TCAAAGCTGC st_squirrel AA-------- AACAGCAAT- AAAAGGTTAC CACGAGGAAT TCAAAGCTGC guinea_pig AA-------- AACAGTAAT- AAAAGGCTAC CATGAGGAAT TCAAAGCTGC rat AA-------- AACGGTAAT- AAAATGTTAC CATGAGGAAT TCAAAGCTGC mouse ---------- ---------- ---------- ---------- ---------- hedgehog GA-------- AAGAGTAAT- AAAAGGTTGC TGTGAGGAAT TCAAAGCTGC shrew AAGGAAAAAA AAAAGTACT- GAAAGGTTAC CACGAGGAAT TTGAAGCTGC rfbat AA-------- AAGAGTAAT- AAAAGGTTAG CATGAGGAAT TCAAAGCTGC cpbat ---------- ---------- ---------- ---------- ---------- cat AA-------- AGGAGTAATA AAAAGGTTAC CAGGAGGAAT TCAAAGCTGC clouded_leopard AA-------- AGGAGTAATA AAAAGGTTAC CATGAGGAAT TCAAAGCTGC ferret AA-------- AAGAGTAAT- AAAAGGTTAC CATGTGGAAT TCAAAGCTGC dog AA-------- AAGAGTAAT- AAAAGGTTAC CACGAGGAAT CCAGAGCTGC pig AA-------- AAGAGTAAT- AAAAGATTGC CATGAGGAAT TCAAAACTGC muntjak_indian AA-------- AAGAGTAAC- AAAAGATTAC CATGAGGAAT TCAAAGCTGC sheep AA-------- AAGAGTAAC- AAAAGATTAC CATGAGGAAT TCAAAGCTGC cow AA-------- AAGAGTAAC- AAAAGATTAC CATGAGGAAT TCAAAGCTGC horse ---------- ---------- ---------- ---------- ---------- armadillo AA-------- AATGGCAAT- AAAAGGTTAC CGTGAGGAAT TCAAAGTTTC elephant AA-------- AACGGTAAT- AAAAGGTTAC TGTGAGAAAT TCAAAGCTGC tenrec AA-------- AAAAGTAAT- AAAAGGTTAC TAGGAGGCAT CGAAAGCTGC wallaby AA-------- AGTGGTAAT- AAAAGGTTAG CAACAGGAAT TCAGAGCGAC monodelphis AA-------- AGTGGCAAT- AAAAGGTTAG CAGCAAGAAT TACAAGCAAC opossum AA-------- AGTGGTAAT- AAAAGGTTAA CAGCAAGAAT TCCAAGCAAC platypus ---------- ---------- ---------- ---------- ---------- chicken AG-------- GA-GGTAAT- AAAAGGTTAC CAGCAGGAAT GCAGAGCTGC fugu TA-------- AGAGCCTGT- -AAATATCTG TGGCAGGAAT GTGAGGCGGC tetra TC-------- AGGGCCTGT- -AAATATCAG TGGCAGGAAT GCGAAGCGAC human CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACT chimp CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACT gorilla CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACT orangutan CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACT gibbon CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACT colobus_monkey CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACGCT vervet CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACT baboon CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACT macaque CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACT dusky_titi CTTGTATGGT AATTTTGGAA ACACCAACCT GG-------- AATGCACACA owl_monkey CTTGTATGGT AATTTTGGAA ACACCAACCT GG-------- AATGCACACT squirrel_monkey CTTGTATGGT AATTTTGGAA ACACCAACCT GG-------- AATGGACACT marmoset CTTGTATGGT AATTTTGGAA ACACCAACCT GG-------- AATGCACACT galago CTTGTATGGT AATTTTGAAA ATACCAACCT AA-------- AATGCACACC mouse_lemur CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGTACACC lemur CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCGCACC rabbit CTTGTATGGT AATTTGGAAA ACACCAACCT GG-------- AACACATACT st_squirrel CTTGTATGGT AATTTTGAAA ACACCAGCCT GGGATCCTGC AATGCACACT guinea_pig CTTGTATGGT AATTTTGTAA ACACCAACCT GG-------- AATGCACACT rat CTTGTATGGT AATGTTACAG AAACTAACCT GG-------- AATGAACAGT mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTTGTATGGT AATTTTGAAG ACACCAACTC AG-------- AGTGCACACT shrew CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCGCA-- rfbat CTTGTATGGC AGTTCTGAAA CTACCAACCT GG-------- AATGCATGCC cpbat ---------- ---------- ---------- ---------- ---------- cat CTTGTATGGT AATTCTGAGA ACACCAGCCT GG-------- AATGCACACT clouded_leopard CTTGTATGGT AATTCTGAGA ACACCAGCCT GG-------- AATGCACACT ferret CTTGTATGGC AATTTTGAAA A--CCAACCT GG-------- AATGCACACT dog CTTGTATGGT AATTTTGAAA ACACCAACCC GG-------- AATGCACACT pig CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- CATGCACACT muntjak_indian CTTGTATGGT AACTTTGAAA AC-CCAACCT GG-------- AATGCACAGA sheep CTTGTATGGT AACTTTGAAA AC-CCAACCT GG-------- AATGCACACT cow CTTGTATGGT AACTTTGAAA AC-CCAACCT GG-------- AATGCACACT horse ---------- ---------- ---------- ---------- ---------- armadillo CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATTCACACT elephant CTTGTATGGT AATTTTGAAA ACACCAACCT GG-------- AATGCACACC tenrec CTTGTATGGT AATTTTGAAA ACACCAGCCT GG-------- AGTACACACG wallaby CTTGTATGGT AATTTTGAAA ATACTAACCT GG-------- AATGCACACT monodelphis CTTGTATGGT AATTTTGGAA ACACTAACCT GG-------- AATGCACGCT opossum CTTGTATGGT AATTTTGAAA ACACTAACCT GG-------- AATGCACGCT platypus ---------- ---------- ---------- ---------- ---------- chicken CTTGTATGGT AGTTTTGAGA AACCTGACGT GG-------- ATGGCACACG fugu CTTGTATGGT CAT------- ---------- ---------- ---------- tetra CTTGTATGGT CAT------- ---------- ---------- ---------- human CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtaca chimp CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtaca gorilla CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtaca orangutan CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtaca gibbon CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtaca colobus_monkey CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtata vervet CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtata baboon CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtata macaque CTGTGGGGTT TCCTTATGAG TCAaaaaaca ---------- --ttagtata dusky_titi GTGTGGGGTT TCCTTATGAG TCAaaaaata ---------- --ttaataca owl_monkey GTGTGGGGTT TCCTTATGAG TCAaaaaata ---------- --ttagcaca squirrel_monkey GTGTGGGGTT TCCTTATGAG TCAaaaaata ---------- --ttagcaca marmoset GTGTGGGGTT TCCTTATGAG TCAaaaaata ---------- --ttagcacg galago GCGTGGGGTT TCCTCATGAG TCAaaaaatc ---------- --tgagtatt mouse_lemur GTGTGGGGTT TCCTTATGAA TCAaaaaatt ---------- --taagt--- lemur GTGTGGGGTT TCCTTATGAA TCA------- ---------- ---------- rabbit GTG-GGGGTT TCCTCATGAA TCA------- ---------- ---------- st_squirrel GTGTGGGGTT TCCTTATGAA TCA------- ---------- ---------- guinea_pig CTGTGGGGTT TCCTTATGAA TCAgaaaagt ---------- --ttaaaatg rat GTGTGGGGTT TCCTAATGAA TCA------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog GTGTGGGGTT TCCTTATGAA TCA------- ---------- ---------- shrew GCTTGGGGTT TCCTTATGAA TCAGGACATA CTATTCAAAA AATCAGTATC rfbat GCGTGGGGTT TCCTTATGAA TCAggaaatt c--------- --ttagtact cpbat ---------- ---------- ---------- ---------- ---------- cat GTGTGGGGTT TCCGTATGAA TCA------- ---------- ---------- clouded_leopard GTGTGGGGTT TCCGTATGAA TCA------- ---------- ---------- ferret GTGTGGGGTT TCCGTATGAA TCA------- ---------- ---------- dog GTGTGGGGTT TCCGCATGAA TCA------- ---------- ---------- pig GTGTGGGGTT TCCTTATGAA TCAggaaata c--------- --ttagttct muntjak_indian GTGTGGGGTT TCCTTATGAA TCAagaaatt t--------- --ttagttct sheep GTGTGGGGTT TCCTTATGAA TCAggaaatt t--------- --ttagttct cow GTGTGGGGTT TCCTTATGAA TCA------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo GCGTGGGGTT TCCTTATGAA TCA------- ---------- ---------- elephant ATGTGGGGTT TCCTTATGAA TCAAAAAATC ---------- --TTAGTTTT tenrec GTGAGTGGTT TCTTTATGAG TCA------- ---------- ---------- wallaby ATGTGGGGTT TCCTAATGAA TCA------- ---------- ---------- monodelphis ATGTGGGGTT TCCTAATGAA TTA------- ---------- ---------- opossum ATGTGGGGTT TCCTAATGAA TTA------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ATGT------ ----GCAAAG GCGAAAAATC TGCCTTCTTT TTTTATTCTG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- ---------- ---------- ------tttt tgccaat--t chimp ---------- ---------- ---------- ------tttt tgccaat--t gorilla ---------- ---------- ---------- -----ttttt tgccaat--t orangutan ---------- ---------- ---------- ------tttt tgcaaat--t gibbon ---------- ---------- ---------- ------tttt tgaaaat--t colobus_monkey ---------- ---------- ---------- ------tttt tgcaaat--t vervet ---------- ---------- ---------- ------tttt tgcaaat--t baboon ---------- ---------- ---------- ------tttt tgcaaat--t macaque ---------- ---------- ---------- ------tttt tgcaaat--t dusky_titi ---------- ---------- ---------- ------tttt tgcaaat--t owl_monkey ---------- ---------- ---------- -------tat tgcaaat--t squirrel_monkey ---------- ---------- ---------- -------ttt tgcaaat--t marmoset ---------- ---------- ---------- -------ttt tgcaaat--t galago ---------- ---------- ---------- -------ttt tccaact--t mouse_lemur ---------- ---------- ---------- ---------- ----act--t lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ------tttt tgcagct--t rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ------ATAG GACAAATAAA rfbat ---------- ---------- ---------- ------gttt taccact--t cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ------tttt ggcaact--t muntjak_indian ---------- ---------- ---------- ------tttt ggcaact--t sheep ---------- ---------- ---------- ------tttt ggaaact--t cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- -----ttttt tacaaat--t elephant TTTTTTTTTT T--------- ---------- -----Ttttt tgcaagt--t tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- -CGTCTGGTT TCAAACTCTG ATGGTTTTTC TGCA-----G fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ttctgtaagt ttgaagttat ttgaaaataa aaaGTT-AAA AAAA----TA chimp ttctgtaagt ttgaagttat ttgaaaataa aaaGTT-AAA AAAA----TA gorilla ttctgtaagt ttgaagttat ttgaaaataa aaaGTT-AAA AAAA----TA orangutan ttctgtaagt ttgaagttat ttgaaaacaa aaaGTT-AAA AAAA----TA gibbon ttctgtaagt ttgaagttat ttgaaaataa aaaGTT-AAA AAAA----TA colobus_monkey ttctgtaagt ttgaatttat ttgaaaataa aaaGTAAAAA AAAA----TA vervet ttctgtaagt ttgaagttat ttgaaaataa aaaGTTAAAA AAAA----TA baboon ttctgtaagt ttgaagttat ttgaaaataa aaaGTTAAAA AAAA----TA macaque ttctgtaagt ttgaagtcat ttgaaaataa aaaGTTAAAA AAAA----TA dusky_titi ttccataagt ttggagttat ttgaaaataa TATATT--AA AAAA----TA owl_monkey ttctgtaagt ttggagttat ttgaaaataa TATGTT--AA AAAA----TA squirrel_monkey ttctgtaagt ttggagttac ttgaaaataa TATGTT--AA AAAA----TA marmoset ttctgtaagt ttggaattat tcgaaaatGA TATGTT--AA AAAA----TA galago ttctgcaagt ttgaaagtgt atcaaaat-- --------aa aaaG----TA mouse_lemur ttctgtaagt ttgaaagt-- ----aCAC-- --------AA AAAG----TA lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ttctgt--gt ttgatgtaat atcaaactaa aaagttaaaa gaAA----TA rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew TTCTGTACAT TTGAAATTAT TTAAAAATAA CAT--T--GA GAAA----TG rfbat tcctatacat ttgcaattat ttcaaaataa CACA-T--TA AAAA----AA cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ttctgtaagt atgaaattat ttcaaaataa aaCATT--TA AAAA------ muntjak_indian ttgtgtaaat ttaaaattat ttcaaactaa aaCA-T--TA AAAAAAAGTA sheep gtgtgtaaat ttaaaactat ttcaaactaa aacatt--ta aaaaAAATTA cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ttctgtaagt ttgaagttat ttaaagataa aaaGTT--AA AAAA----AA elephant ttcggtaagt ttgaaattat ttcaaaataa aaaGTC--AA AAAA----AA tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken TTGAGCGAAT TCGAATCTTT TCTTA----- ----CT--AA GCAG----TA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATTCAATAAA ACTGA-CAGA CTC-AAAATG TTTTGCtaaa ataaatataa chimp ATTCAATAAA ACTGA-CAGA CTC-AAAATG TTTTGCtaaa ataaatataa gorilla ATTCAATAAA ACTGA-CAGA CTC-AAAATG TTTTGCtaaa ataaatataa orangutan ATTCAATAAA ACTGA-CAGA CTC-AAAATG TTTTGCtaaa ataaatataa gibbon ATTCAATGAA ACTGA-CAGA CTC-AAAATG TTTTGCtaaa ataaatataa colobus_monkey ATTCAATAAA AGTGA-CAGA CTC-AAAATG TTTTGCTAAA ATAAATATCA vervet ATTCAATAAA AGTGA-CAGA CTC-AAAATG TTTTGCTAAA ATAAATACCA baboon ATTCAATAAA AGTGA-CAGA CTC-AAAATG TTTTGCTAAA ATAAATACCA macaque ATTCAATAAA AGTGA-CAGA CTC-AAAATG TTTTGCTAAA ATAAATACCA dusky_titi ACTTAGTAAA AGTGA-CAGA CTC-CAAATG TTTTGCTAAA ATAAATATTA owl_monkey ACTTAGTAAA AGTGA-CAGA CTC-CAAATG TTTTGCTAAA ATAAATATTA squirrel_monkey ACGTAGTAAA AGTGA-CAGA CTC-CAAATG TTTTGCTAAA ATAAATATTA marmoset ACTTAGTAAA AGTGA-CAGA CTC-CAAATG TTTTGCTAAA ATAAATATT- galago ACTCAGTAAA AATGAGCAGA CTC--AAATG TTTGGTTGCA ATAAATACTA mouse_lemur ACTCAATAAA AATGAACAGA CTCAAAAATA TTTTTCTGAA ATAAATATTA lemur -----ATAAA AATGAACAGA CTC-AAAATA TTTTGCTGAA ATAAATATTA rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel -----ATAAA AGCGAATGAA CTC-CAAATG TTTTGCTGAA ATAAATATTA guinea_pig A-ACAGTAAA AGTGAACAGT CTC-AAAATG TTTTACAGAA ATAAATGTTA rat -----ATAAA AATGAACAGT CTC-AAAGTG TTTTGTTGAA ATAAATATTA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew TTAC-ATAAA AATGA----A CTC-AAAATA CTTTGCTGAA ATAAATATTA rfbat TAACAATAAA AATGAACAGA CTC-AAAATA TTTTGCTGAA ACAAA---TA cpbat ---------- ---------- ---------- ---------- ---------- cat -----A---- --TGAACAGG CTC-AAAATA TTTTGCTGAA ATAAATATTA clouded_leopard -----A---- --TGAACAGG CTC-AAAATA TTTTGCTGAA ATAAATATTA ferret -----ACAAA AATGAACAGG CTT-AAAATA TTTTGCTGAA ATAAAAATTA dog -----ACAAA ATTGAACCGG CTC-AAAATA TCTTGCTGAA ATAAATATTA pig --CCGATAAA AATGAACAGG CTC-AAAACA TTTTGCCGAA ATAAATATTA muntjak_indian ATTCAATAAA AATGAACAGG CTG-AAAGTA TTTTACTGAA ATAAATATTA sheep ATTCAATAAA AGTGAACAGG CTC-AAAGTA TTTTACCGAA ATAAATATTA cow -----ATAAA AGTGAACAGG CTC-AAAGTA TTTTACCGAA ATAAATATTA horse ---------- ---------- ---------- ---------- ---------- armadillo A---AATGAA AATGGACAGA CTC-ATAATA TTTTTCTCAA CTAAATATTA elephant AATCAATAAA GATGGAGAGG CTC-AAAATA TTTTGCTGAA ATAAATACTA tenrec -----ATAAA AATGAACAGA CTA-AAAATG TTTTG----- ATAAATATCC wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ATTGAATAAC GTTG------ -TT-AAGTTG CTTCT----- ----ATTTTA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ttttaatCAT GTGTACCC-A GG-CAATTTC AACTTTTAAC AAAAA-TATG chimp ttttaatCTT GTGTACCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG gorilla ttttaatCTT GTGTACCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG orangutan ttttaatCTT GTGTACCC-A GG-CAATTTC AAATTTTAAT AAAAA-TATG gibbon ttttaatCTT GAGTACCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG colobus_monkey TCTCAATCTT GTGTACCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG vervet TCTCAATCTT GTGTTCCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG baboon TCTCAATCTT GTGTACCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG macaque TCTCAATCTT GTGTTCCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG dusky_titi TTTCAATCTT GTGTACCC-A GG-AAATTTC AACTTTTAAT AAAAA-TATG owl_monkey TTTCAATCTT GTGTACCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG squirrel_monkey TTTCAATCTT GTGTACCC-A GG-CAATTTC AACTTTTAAT AAAAA-TACG marmoset --TCAATCTT GTGTACCC-A GG-CAATTTC AACTTTTAAT AAAAA-TATG galago TCTCAATATT GTGTACAC-T GA-CAGTTTT GACTTTTAAT AAAAG-TATG mouse_lemur TCTCAATCTT GTGTACAC-A GG-CAGTTTT AGCTTTTAAT AAAAG-TATG lemur TCTCAAACTT GTGTACAT-A GG-CAGTTTC AACTTTTAAT AAAAG-TATG rabbit ---------- ---------- ---------- -------AAT AAAAG-TATG st_squirrel TCTCAATCTT GTGTACAT-A GG-CAGTGTC AGCTTTTAAT AAAAG-TATG guinea_pig TCTCAATCTT GTATACAT-A AG-CAGCTTC AACTTTTAAT ACAAG-TATG rat TCACAATCTT GTGTACAT-A GG-CAGTTTC CCTTTTT--- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- -------TGT AGAAA-TATG shrew TCTTAATCTT GTGTACATAA GG-CAGTTTC AAATTTTAAT AGCAA-TATG rfbat TCTCAGTC-T GTGTCCACAA GG-CAGTTTC AAGTTTTTAT AGAAG-TGTG cpbat ---------- ---------- ---------- ---------- ---------- cat TTTCAATCTT GTGTACATAA AA-CAGTTTC AACTTTTAAA AAAAG-TATG clouded_leopard TTTCAATCTT GTGTACATAA GG-CAGTTTC ACCTTTTaaa aaaaaatatG ferret TCTCAATCTT GTGTACATAA GG-CAGTTTC AATTTTTACT AGAAG-TATG dog TCTCAATCTT GTGGACATAA GG-CCGTTTC AACATTTAAT AGAAA-TATG pig TCTCAATATT TTGTACATAA AG-CAGTTTC AACTTTT--- ---------- muntjak_indian TCTCAATTTT GTGTACACAA GG-CAGTTTC AACTTTTAAT AGAAA-TATG sheep TCTCAATTTT GTATACATAA GG-CAGTTTC AACTTTTAAT AGAAA-TATG cow TCTCAATTTT GTGTACATAA GG-CAGTTTC AACTTTTAAA AGAAA-TATG horse ---------- ---------- ---------- ---------- ---------- armadillo CTTCAATCTT GTTTACAT-A AGTCGGTTTC AACTTTTAGT AAAAG-TATG elephant TCTCAATCTT GTGTACCT-G AA-CAGTTTC GCCTTTTaat aaaaG-TATG tenrec TCTC-CTCGT GTGTACAT-A AG-CAGTTTC AGCTTTT--- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken TCTTTCTGAT GTGTGCCCAA AT-AAAGCTT AGCATCT--- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TAGGCCAGTG ---------G TTTC-TTCAG ACAAAAGTAG TCTTCACATT chimp TAGGCCAGTG ---------G TTTC-TTCAG ACAAAAGTAG TCTTCACATT gorilla TAGGCCAGTG ---------G TTTC-TTCAG GCAAAAGCAG TCTTCACATT orangutan TAGGCCAGTG ---------G TTTC-TTCAG ACAAAAGCAG TCTTCACATT gibbon TAGGCCAGTG ---------A TTTC-TTCAG ACAAAAGCAG TCTTCACATT colobus_monkey TAGGCCAGTG ---------G TTTC-TTCAG ACAACAGCAG TCTTCACATT vervet TAGGCCAGTG ---------G TTTC-TTCAG ACAAAAGCAG TCTTCACATT baboon TAGGCCAGTG ---------G TTTC-TTCAG ACAAAAGCAG TCTTCACATT macaque TAGGCCAGTG ---------G TTTC-TTCAG ACAAAAGCAG TCTTCACATT dusky_titi TAGGCCAGTG ---------G TTTC-TTCAG ACAAAAGCAG TCTTC----- owl_monkey TAGG-CAGTG ---------G TTTC-TTCAG ACAAAAGCAG TCCTCACATT squirrel_monkey TAGG-CAGTG ---------G TTTC-TTCAG A--AAAGCAG TCTTCACATT marmoset TAGG-CAGTG ---------G TTTC-TTCAG ACAAAAGCAG TCTTCACATT galago TAAGCCAGTG TTTTTTTTTT TTTT-TTCAG ACAAAAACAG TCTTCACATT mouse_lemur TAGACCAGTG ---------G TTTC-TTCAA ACAAAAGCAG TCTTCACATT lemur TAGGCCAGTG ---------G TTTC-TTCAG ACAAAAGCAG TCTTCACATT rabbit TAGGCCAGTG ---------A TTTC-TTCAG ACAAAAGCAA TCTTCACATT st_squirrel TAGGCCAGTG ---------G TTTC-TTCAG AGGAAAGCAA TCTTCACATT guinea_pig TAAGTCAATG ---------A TTTC-CTCAG AGGAAAGCTG TCTTCACATT rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TAGGCCACTG ---------A TTTC-TTCAG AAGAAAGTTG TCTTCACATT shrew AAGGCCAGTG ---------G TTTC-TTCAG AAGAAAACTG TCCTCACATT rfbat TAGGCCAGTG ---------G TTTC-TTCAG AGGAAAGCAG TCTTCACATT cpbat ---------- ---------- ---------- ---------- ---------- cat TAGGCCAGTG -----GTTTT TTTC-TTCAG AAGAAAGCAG CTTTCACATT clouded_leopard TAGGCCAGTG ------TTTT TTTC-TTGAG AAGAAAGCAG CTTTCACATT ferret TAGGCCAGTG ---------G TTTC-TTCAA AAGAAAGCAG TCTTCACATT dog TAGGCCAGTG ---------G TTTC-TTCAG AAGAAAGCAG CCTTCACATT pig ---------- ---------- ---------- ---------- ---------- muntjak_indian TAGGCCAGTG ---------G TTTG-TTCAG AAGAAAGCTG TCTTCATACT sheep TAGGCCAGTG ---------G TTTA--TCAG AAGAAAGCTG TCTTCATACT cow TAGGCCAGTG ---------G TTTG-TTTAG AAGAAAGCTA TCTTCATACT horse ---------- ---------- ---------- ---------- ---------- armadillo TAGGTCAATG ---------G TTTCTTTTAG ACAAAAGCA- TCTTCACATT elephant TAGGCCAGTG ---------C TTTC-TTCAA ACGAGAGCAG TCTTCAAATT tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------G AAAACTCCAT ATTTCACACT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---CCAGAAA CTCATGGGGA GGTTGTTG-- AAAGAACAAG ATTGTCCTTT chimp ---CCAGAAA CTCATGGGGA GGTTGTTG-- AAAGAACAAG ATTGTCCTTT gorilla ---CCAGAAA CTCATGGGGA GGTTGTTG-- AAAGAACAAG -----CCTTT orangutan ---CCAGAAA CTCATGGGGA GGTTGTTG-- AAAGAACAAG ATTGTCCTTT gibbon ---CCAGAAA CTCATGGGGG GTTTGTTG-- AAAGAACAAG ATTGTCCTTT colobus_monkey ---CCAGAAA CTCAGGGGGA GGTTGTTG-- AAAGAACAAG ---------- vervet ---CCAGAAA CTCAGGGGGA GGTTGTTG-- AAAGAACAAG ---------- baboon ---CCAGAAA CTCAGGGGGA GGTTGTTG-- AAAGAACAAG ---------- macaque ---CCAGAAA CTCAGGGGGA GGTTGTTG-- AAAGAACAAG ---------- dusky_titi ---------A CTTATGAGGA GGTTGTTG-- GAAGAACAAG ATTGTTCTTT owl_monkey ---CCAGAAA CTCACAAGGA GGTTGTTG-- GAAGGACAAG ATTGTTCTTT squirrel_monkey ---CCAGAAA CTCACGAGGA GGTTGTTG-- GAAGGACAAG ATTGTTCTTT marmoset ---CCAGAAA CTCACGAGGA GGTCGTTG-- GAAGGACA-- ATTGTTCTTT galago ---CCAGAAA GTAATGGGGA AGTCATTG-- AAAGAATAAG ATTGT--TTT mouse_lemur ---CCAGAAA CTCAAGGGGA GGTCATTG-- AAAGAGCAAA ATTGTTCTTT lemur ---CCAGAAA CTCAAGGGGA GGTCGTTG-- AAAGAGCAAA ATTGTTCTTT rabbit ---CCAGAAA CTCATGGGGA GAGAGTAG-- AAAGAACAAG ATTGTTCTTT st_squirrel ---CCAGAAA CTCTTGGGAA GGTCACTG-- AAAGAACAAG ATTGTTCTTT guinea_pig ---CCAGACA CTCATGGGGA GGTCACTG-- AAAGAACAAG ATTGTT-TTT rat ---------- ---------- ---------- ---------- ATTGTTCCTT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---CCAAAAA CTCATGGAGA GGTTGTTG-A AAAGAACAAG TTTGTTCTTT shrew ---CCAGGAA CTCACAGAGA GGTTGTTG-A AAAGAACAAG ATTGTTCTTT rfbat ---CCAGAAT CTCATGGGGA GGTCGTTG-A AAAGAACAAG ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---CCAGAAA CTCTTGGGGA GGTCATTG-A AAAGAACAAG ATTGTTCTTT clouded_leopard ---CCAGAAA CTCTTGGGGA GGTCATTG-A AAAGAACAAG ATTGTTCTTT ferret ---CCAGAAA CTCACAGGGA GGTCACTG-A AAAGAACAAG ---------- dog ---CCAGAAA CTCATGGGGA GGTCATTG-A AAAGAACAAG ATTGTTCTTT pig ---------- ---------- ---------- ---------- AATGTTCTTT muntjak_indian ---CCAGAAA CTCAGGGGGA GGTCGCTGAA AAAGAACAAG ---------- sheep ---CAAGAAA CTCAGGGGGA GGTCGCTG-A AAAGAACAAG ATTGTTCTTT cow ---CTAGAAA CTCAGCGGGA GGTCGCTG-A AAAGAACAAG ATTGTTCTTT horse ---------- ---------- ---------- ---------- ---------- armadillo ---CCAGAAA CTCTTGGGGA GGTTGTTG-A AAAGAACAAG ATTTCTCTTC elephant ---CCAGAAA CTCAAGGGGA GATTGTTG-A AAAGAACAAG ATTGTTCTTT tenrec ---------- ---------- ---------- ---------- GTTGTTCTTG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken TGCCAAAAAG CTCCTTGTGT GGTCTTTA-G AACTTCCGAA ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GTTTAGCTTT CATCTTTCTC AGAGTTT--- GTAATTT--T TTGTTGTCTT chimp GTTTAGCTTT CATCTTTCTC AGAGTTT--- Gtaattt--t ttattGTCTT gorilla GTTTAGCTTT CATCTTTCTC AGAGTTT--- GAAATTT--T TTGTTGTCTT orangutan GTTCAGCCTT CATCTTTCTC AGAGTTC--- GAAATTT--T TTGTTGTCTT gibbon GTTTAGCTTT CATCTTTCTC AGAGTTT--- Gaaattt--t ttgttgtctt colobus_monkey ---------- ---------- ---------- -aaattt--t ---ttgtctt vervet ---------- ---------- ---------- -AAATTT--T TTGTTGTCTT baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- -AAATTT--T TTGTTGTCTT dusky_titi GTCTAGCTTT CATCTTTCTC ACAGTTT--- GAGTTTT--T TTGTTGTCTT owl_monkey GTTTAGCTTT CATCTTTCTC ACAGTTC--- GAATTTT--T TTGTTGTCTT squirrel_monkey GTTTAGCTTT CATCTTTCTC ACAGTTT--- GAGATTT--T T--TTGTCTT marmoset GTTTAGCTTT CATCTTTCTC ACAGTTT--- GAATTTT--T T--TTGTCTT galago CTTTAGCTTT CATCTTTCTC AGAGTTG--- G--------- ---------- mouse_lemur GTTTAGCTTT CATCT----- ---------- ----ttc--t tttttgcctt lemur GTTTAGCTTT CATCT----- ---------- ----TTC--T TTTTTGCCTT rabbit GTTTAGCTTT CATCTTTCTC AGAGTTT--- GGAATTT--T CTT------- st_squirrel GTTTAGCTTT CATCTTTCAC AGAGTTT--- G--------- ---------- guinea_pig GTGTGATTTT TACCTTTCAC ACTCTTT--- AGAGTTT--T GTTTGTTGCC rat GTTTAGCTCT AACCTTTCAC ACGGTTT--- G--------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog GTTTAGCTTT CAATTTTCAC AGAGTTT--- G--------- ---------- shrew GTTTGGCTTT CATCTCTCTG AGAGTTT--- G--------- ---------- rfbat ---------- ---------- ---------- -GAATTTTCT TTGTTACCTT cpbat ---------- ---------- ---------- ---------- ---------- cat GTTTAGGCTT CATCTTTCTC AGAGTTT--- GACATTTTCT TTGTTACCTT clouded_leopard GTTTAGGCTT CATCTTTCTC AGAATTT--- GACATTTTCT TTGTTACCTT ferret ---------- -----TTCTC AGAGTTT--- GAAGTTTTCT TTGTTACCTT dog GTTTAGCCTT CATCTTTCTC AGAGTTT--- GAAATTTTCT TTGTTACCTT pig GTTTAGTTTT CATCTTTCTC AGAGTTTGAA G--------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep GTTTAGCTTT CATCTTTCT- -GAGTTT--- GGATTTTCCT CTGTTACCTT cow GTTTAGCTTT CATCTTTCT- -GAGTTT--- GGATTTTCCT TTGTTATCTT horse ---------- ---------- ---------- ---------- ---------- armadillo ATTTAGTTTT CATCTCTCTG ATAGTTT--- G--------- ---------- elephant GTTTGGCTTC CATGTTTCTC ATAATTT--- GAGTTTTTAT TTGTTGCCAA tenrec GCTTAGCTTT CGTCTTTCTC AGAGTTT--- GAGCTTTTCT CTGCTGCCTT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- -TGATTTTCT TT-------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAAAAATGAT TTTAG----- ---------- ---------- ---------- chimp AAAAAATGAT TTTAG----- ---------- ---------- ---------- gorilla AAAAAATGAT TTTAG----- ---------- ---------- ---------- orangutan AAAAAATGAT TTCAG----- ---------- ---------- ---------- gibbon aaaaaatgat tttag----- ---------- ---------- ---------- colobus_monkey aaaaaataat tttaG----- ---------- ---------- ---------- vervet AAAAAACAAT TTTAG----- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AAAAAAT-AT TTTAG----- ---------- ---------- ---------- dusky_titi AAAAAATTAT TTTAG----- ---------- ---------- ---------- owl_monkey AAAAAATGAT TTTAG----- ---------- ---------- ---------- squirrel_monkey AAAAAATGAT TTTAG----- ---------- ---------- ---------- marmoset AAAAAATGA- TTTAT----- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur -aaaaatgat ttggg----- ---------- ---------- ---------- lemur -AAAAATGAT TTGGG----- ---------- ---------- ---------- rabbit AAAAAATGAT TGTAG----- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig TGAAAATGAT TTTAG----- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat -AAAAAGGAC TCTTG----- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat -AAAAATGAT CATAG----- ---------- ---------- ---------- clouded_leopard -AAAAATGAT CATAG----- ---------- ---------- ---------- ferret -AAAAAGGAT CTTAG----- ---------- ---------- ---------- dog -AAAAATGAT CTTAGTAAAa aataaataaa taaataaata aataaataaa pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep -AAACATGAT AGTAG----- ---------- ---------- ---------- cow -AAACATGAT TGTAG----- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant -AAAAATTAT TTTAG----- ---------- ---------- ---------- tenrec TAAAGATGAC TGTCA----- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- ---------- ---------- ---------- ---------- chimp ---------- ---------- ---------- ---------- ---------- gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ---------- ---------- ---------- ---------- ---------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---------- dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog taaataaata aataaaATGA TCTTAGTaaa aaaaaaaaaa aaaaaaaaaa pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- --ACATCAGA AAAAAGAAAG T-ACCTTCCT T--ATATATG chimp ---------- --ACATCAGA AAAAAGAAAG T-ACCTTCCT T--ATATATG gorilla ---------- --ACATCAGA AAAAAGAAAG T-ACCTTCCT T--ATATATG orangutan ---------- --ACATCAGA AAAAAGAAAG T-ACCTTCCT T--ATATATG gibbon ---------- --acATCAGA AAAAAGAAAG T-ACCTTCCT T--ATGTATG colobus_monkey ---------- --ACATCAGA ATAAAGAAAG T-ACCTTCCT T--ATATATG vervet ---------- --ACATCAGA ATAAAGAAAG T-ACCTTCCT T--ATGTATG baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- --ACATCAGA ATAAAGAAAG T-ACCTTCCT T--ATATATG dusky_titi ---------- --ACG---AA AAAAAGAAAT T-ACCTTCCT T--ACATATG owl_monkey ---------- --ACG----A AAAAAGAAAT T-ACCTTCCT T--ACATATG squirrel_monkey ---------- --GCG----- AAAAAAAAAT T-TCCTTCCT T--ACATATG marmoset ---------- --ACG----- --AAAAAAGT T-TCCTTCCT T--ACATATG galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- --gcATCAGA AAAGAGAAAG T-ACCGTCCT T--ATATATG lemur ---------- --GCATCAGA AAAGAGAAAG T-ACCTTCCT T--ATACATA rabbit ---------- --GCATCAGG AAAGAGAAAG T-ACTTTCCC T--ATATATG st_squirrel ---------- ---------- ---------- ---------- ------taat guinea_pig ---------- --GTATCATA AAACAAAATA T-ATATTCCT TTAATACATG rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ------TATG rfbat ---------- --GCatcaga aaagaggaag t-ttcttcct t--ataTAGG cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- --GCatcaga aaagagaagg t-actttcct t--acaTATG clouded_leopard ---------- --GCATCAGA AAAGAGAAGG T-ACCTCCCT T--ACATATG ferret ---------- --GCagcaga aaagagaaag a-accatcct t--ataAATG dog aaaaGATCTC AGGCatcaga aaagagaaag t-acctacct t--ataTATG pig ---------- ---------- ---------- ---------- ------TAAG muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- --ACATCAGA AAAGAGAAAG TAACCTTCCT T--ATATATG cow ---------- --ACATCAGA AAAGAGAAAG TAACCTTTCT T--ATATATG horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ------TACA elephant ---------- --GCatcaga aaagagaaag t-actttcct t--ataTATG tenrec ---------- --AC------ ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC chimp GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC gorilla GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC orangutan GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC gibbon GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC colobus_monkey GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC vervet GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC baboon ---------- ---------- ---------- ---------- ---------- macaque GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC dusky_titi GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC owl_monkey GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC squirrel_monkey GGTTATAAAG CTTTAGAATT TTGCATTT-C CATTT----- TATA--ATAC marmoset GATTATAAAG CTTTAGAATT TTGCATTT-C CATTTTATCA TATA--ATAC galago ---------- ---------- ---------- ---------- ---------- mouse_lemur GATTTTAAAG CTATAAAAAT TTGCATTT-C TATCTTACTA TATATAATCC lemur GATTATAAAG CTTTAAAAAT TTGCATTT-C CATCTTATCA TATA--ATCC rabbit GACTATAAAG CTTTAAAAAC TTGCAGCT-C CACATCATCA AATA--ATAC st_squirrel gatcagaaaa ttttaaaa-- ---------- ---------- ---------- guinea_pig GATTATAAAG CTTTAAAAAT TTACATTT-T CATTT----- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew AATTATAAAG CTATAAAATT TTGTGCTT-C TGTTTTATTA GACA--ATAA rfbat GATTATAAAG CTTTAAAAAT GTGCATCT-T CATTTTATTA GACA--ATAT cpbat ---------- ---------- ---------- ---------- ---------- cat GATTATAAAG CTTTAAAAGT TTGCATTT-C CACTTTATTA TATA--ATAC clouded_leopard GATTATAAAG CTTTAAAAGT TTGCATTT-C CACTTTATTA TATA--ATAC ferret GATTATAAAG CTTTAAAATG TTCCATTT-C CATTTTATTA TATA--ATGC dog GATTATGAAG CTTTAAAATT TTGCATTT-C CATTT-ATTA CATA--ATAC pig GATTATAAGG CTTTAAAAAT TTATATTC-C CATTTTACTA TATA--ATAC muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep GATTATAAGG CTTT------ ---------- TATTTTATTA TATA--ATAC cow GATTATAAGG CTTT------ ---------- TATTTTATTA TATA--ATAC horse ---------- ---------- ---------- ---------- ---------- armadillo GAATATAAAC CTTAAAAAAT GGACAGTT-C ATTTTTATCA TATA--ATAT elephant GATTATAAAA CTTAATAAAT CGGCAGTTCC CTTTTTATCA TATA--ACAC tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human T---AAAAAT TCAATATTAT CATAGTTGAC TGCT--TGAA TAAATTTATT chimp T---AAAAAT TCAATATTAT CATAGTTGAC TGCT--TGAA TAA--TTATT gorilla T---AAAAAT TCAATATTAT CATAGTTGAC TGCT--TGAA TAA--TTATT orangutan T--AAAAAAT TCAATATTAT CGTAGTTGAC TGCT--CGAA TAA--TTATT gibbon T---AAAAAT TCAATATTAT CATAGTTGAC TGCT--TGAA TAA--TTATT colobus_monkey T---AAAAAT TCAATATTAT CATATTTGAC TGCC--CGAA TAA--TTAAT vervet T---AAAAAT TCAATATTAT CATACTTGAA TGCT--CAAA TAA--TTAAT baboon ---------- ---------- ---------- ---------- ---------- macaque T---AAAAAT TCAATATTAT CATAGTTGAC TGCT--CAAA TAA--TTAAT dusky_titi T--AAAAAAT TCAATATTAT CATAGTTGAC TACT--TGAA CAA--TTTAT owl_monkey T--AAAAAAT TCAATATTAT CATAGTTGAC TACT--TGAA CAA--TTTAT squirrel_monkey T---AAAAAT TC---ATTAT CATAGTTGAC TACT--TGAA CAA--TTTAT marmoset TAAAAAAAAT TCAATATTAT CATAGTTGAC TACT--TGAA CAA--TTTAT galago ---------- ---------- ---------- ---------- ---------- mouse_lemur T---AAAAAT TCAATATTAT GATAGTTGAC TACT--TGAA T-A--TTTAT lemur T---AAAAAT TCAATATTAT GATAGTTGAC TACT--TGAA T-A--TTTAT rabbit T---AAAAAT TCAATGTTAT GATAGTTGAT TACT--TGAA C-A-----TT st_squirrel ---------A TCAATATTAT GAT------- ---------- --------GT guinea_pig ---------T TCAATATTAT GAGAGTTAAC AACT--TGAA C-A-----TT rat ---------- ---------- ---------- ---------- --------TT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- --------AT shrew T---AAAATT TTAA------ ---------- ---------- ---------- rfbat C--AAAAAAT TCAGTGTTAT GGTAACTGAC CACT-T-GAA TAA--TTA-- cpbat ---------- ---------- ---------- ---------- ---------- cat T---AAAAAT TCA------- ---------- ---------- ---------- clouded_leopard T---AAAAAT TCA------- ---------- ---------- ---------- ferret T---AAAAAT TCA------- ---------- ---------- ---------- dog T---AAAAAt tta------- ---------- ---------- ---------- pig T----AAAAT TCA--ATTAT GATAATTGAC tattt----- --------AT muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep T---AAAAAT TCA--ATTAT GATAATTCAC TTTT---G-- --------AT cow T---AAAAA- TCA--ATTAT GATAATTCAC TTTT---G-- --------AC horse ---------- ---------- ---------- ---------- ---------- armadillo G---AAAAAT TCAATATTAT GATAGATGAC TACT--TAAA TGA--TTA-G elephant T---AAAAAT TCAATATTAT GACAGTTGAC TATT--TGAA TAA--TTA-T tenrec ---------- ---------- ---------- ---------- -----TTA-T wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTTTAAGTT TTAGAGCTGA AAG--T---- TTAACA---A GTATTATTTA chimp TTTTTAAGTT TTAGAGCTGA AAG--T---- TTAACA---A GTATTATT-A gorilla TTTTTAAGTT TTAGAGCTGA AAG--T---- TTAACA---A GTATTATT-A orangutan TTTTTAAGTT TTAGAGCTGA AAG--T---- TTAACA---A GTATTATT-A gibbon TTTTTAAGTT TTAGAGCTGA AAG--T---- TTAACA---A GTAGTATT-A colobus_monkey TTTTTAAGTT TTAGAGCTGA AAA--T---- TTAACA---A G---TATT-A vervet TTTTTAAGTT TTAGAGCTGA AAG--T---- TTAACA---A GTATTATT-A baboon ---------- ---------- ---------- ---------- ---------- macaque TTTTTAAGTT TTAGAGCTGA AAG--T---- TTAACA---A GTATTATT-A dusky_titi TTTTTAAGTT TTAGAACTGA AAG--TTTAC TTAACA---A GTATTATT-A owl_monkey TTTTTAAGTT TTAGAACTGA AAG--TCTAC TTAACA---A GTATTATT-A squirrel_monkey TTTTTAAGTT TAAGAACTGA AAG--TCTAC TTAACA---A GTATTATT-A marmoset TTTTTAAGTT TAAAAACTGA AAG--TATAC TTAACA---A GTATTATT-A galago ---------- ---------- ---------- ---------- ---------- mouse_lemur TTTTAAAGTT TTAGAACTGA AAT--TTTAT TTAACG---A GTACTATT-A lemur TTTTAAAGTT TTAAAACTGA AAT--TTTAT TTAACA---A GTAGTATT-- rabbit TTTTTAAGTT TTAGAACTAA AAG--TTTAT TTAACA---A GTATTATT-- st_squirrel ATTTCAGTGC TTAGAAATAT AA-------- ---------- ---------- guinea_pig TCCTGAGTGT CGAGGAATAT AAG--TATAT TTAACA---G GTGTTGTT-- rat ATTTTATCAC TTAGAGGTAT AAGGCTATAT TTAACA---T TTATTCTT-- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTTTTCAGTC GTAAACTTGA A-A--T---- TTAACA---A ATA-TATT-A shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- --A--T---- TT-------- ---------A cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig TTTTT-AGTT TTAGAACTGA AAG--T---- CTAACA---A GTATTATT-A muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TTTTTTAGTT TTGGAACTGA AAA--T---- CTAAAA---A GCATTATT-A cow TTTTT-AGTT TTGGAACTGA AAA--T---- CTAAAA---A GTATTATT-A horse ---------- ---------- ---------- ---------- ---------- armadillo ATTTTCAGTT TTAGTACTAA AAA--TGTAC TTAACA---A GTATTTTT-A elephant TTTTTCAGAT ATAGAATTGA AAG--CTTAT TTAACAAGTA TTATTTTT-A tenrec TTTTTCAGCT ATTGAGCTGA AAA--CTTAT TTAACA---A TTATTTTC-A wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- --G--TACAT GT-------- ---------A platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GGAAAGATGT AAAGAACATC ---------- --------TT TTTgtctggg chimp GGAAAGATGT AAAGAACATC ---------- --------TT TTTgtctggg gorilla GGAAAGATGT AAAGAACATC ---------- --------TT TTTgtctggg orangutan GGAAAGATGT AAATAACATC ---------- --------TT TTTgcctggg gibbon GGAAAGGTGT AAAGAACATC ---------- --------TT TTTgcctgtg colobus_monkey GGAAAGATGT AAAGAACATC -----TTA-- -T---TTATT TTTgcctggg vervet GGAAAGATGT AAAGAA---- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque GGAAAGATGT AAAGAACATC -----TTA-- -TTTGTTATT TTTgcctggg dusky_titi GGAAAGATAA GAAGAACATC ---------- -TTGTTTATT TTTgcctggc owl_monkey GGAAAGATAA GAAGAACAGC ---------- -TTGTTTATT TTTgcctggc squirrel_monkey GGAAAGATAA GAAGAACATC ---------- -TGGTTTATT TTTgcctggc marmoset GGAAAGATAA GAAGAACATC ---------- -TGCTTTATT TTTgcctggc galago ---------- ------CATC --TCCTGA-- -TTTATTATT TTTgtttggc mouse_lemur GGAAGTATGT GAAGAACATC GAGTCTTA-- -TTTATTATT TTTgtctgac lemur GGAAATATGT GAAGAACATC -----TTA-- -TTTATTATT TTTgtctggc rabbit ------GATG TGAAGACTTC -----TTA-- -TTTGTTATT TTTgtctggc st_squirrel ---------- ------CATC -----TTA-- -TTTGTTACT TTTgtctggc guinea_pig ------GTGT TGAGAA---- ---------- -TTTGTTATT TTTgcttggc rat ------ATGT GAAGAATGTC -----TTAGA CTCTGTCACT TTTggctggc mouse ---------- ---------- ---------- ---------- ---------- hedgehog GGAAAGATGT GTGTGG---- ---------- ---------- ---gactgga shrew ---------- ------CATC -----TTA-- -------GTT TTTggttggc rfbat GGAAAGATCT GAAGAACATC -----TTA-- -TTTCTTATT TTTggctggc cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---gaccagc clouded_leopard ---------- ---------- ---------- ---------- ---gaccagc ferret ---------- ---------- ---------- ---------- ---gtctgac dog ---------- ---------- ---------- ---------- ---gtctggc pig GGAAAGATGT GAAGAA---- ---------- ---------- ---gtctcgc muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep GGAA-GATGT GAAGAA---- ---------- ---------- ---gtctggc cow GGAAAGATGT GAAGAA---- ---------- ---------- ---gtctggc horse ---------- ---------- ---------- ---------- ---------- armadillo GGTAGGGTGT GAAGAACATC ---------- -TTGTTATTT TTTgtctggc elephant GGAAAGATGT GAAGAAAATT ---------- -T--GTTATT TTTgtctggc tenrec GGAAAAGTGT GAGGAATGTT ---------- -TTGGTTATT TTTatctggc wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum GAGATCATGT AATTAT---- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ttct----tg cacttgttta ataaatattt gccgaaagaC TCAGACCTGG chimp ttct----tg cacttgttta ataaatattt gccgaatgaC TCAGACCTGG gorilla ttct----tg cacttgttta ataaatattt gccgaatgaC TCAGACCTGG orangutan ttct----tg cagttgttta ataaatattt accgaatgaC TCAGACCTGG gibbon ttct----tg cagttgttta ataaatattt gccgaatgaC TCAGACCTGG colobus_monkey ttct----tg cagttattta ataaatattt gccgaatgaC TCAGTTCTGG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ttct----tg cagttattta ataaatattt gctgaatgaC TCAGTCCTGG dusky_titi ttct----tg ca---cttta ataaatattt gccgaatgaT TCAGACCTGG owl_monkey ttct----tg cagttgttta ataaatattt gccgaatgaT TCAGGCCCGG squirrel_monkey ttct----tg cagttgttta ataaatattt gccgaatgaT TCAGACCTGG marmoset ttct----tg cagttgttta ataaatattt gccgaatgaT TCAGACCTGG galago ttct----tg cagttgttta gtaaatattt gctcagtgGC TCAGACGTGG mouse_lemur ttct----tg cagttgttta gtaaatattt gctgaatgaT TCAGACCTGG lemur ttct----tg cagttgttta gtaaatattt gctgaatgaT TCAGACCTGG rabbit tgct----tg cagttgctca ataaatattt gtcaaatgaT TCAGACAAGG st_squirrel ttct----tg cagctgctta ataaatattt gttgaatgaT TCAGACCTCA guinea_pig ttct----tg cagttgctta ataaatattt tttgaatgat tcatACTCCA rat ttct----tc cagttgttca gtaaatatta gttgactgag tCAGACTTCA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ttct----tg cagttgctca ataaatattt gctgaatgaa tCAGACCTGG shrew ttctagtatg cagttactca ataaatattt gctgaatgaa tCAGACCTGG rfbat ttct----tg cagttgctca ataaatattt gctgaatgaT TCAGACCT-- cpbat ---------- ---------- ---------- ---------- ---------- cat ttct----tc cagttgctca ataaatattt gctgaatgaT TCAGACCTGG clouded_leopard ttct----tc cagttgctca ataaatattt gctgaatgaT TCAGACCTGG ferret ttct----tg cagttgctca ataaatattt gctgaatgaT TCAGATGTAG dog ttct----tg cagctgctca ataaatattt gctgaatgaT TCAGACGTGG pig ttct----tg cagatgctca ataaatattt gctgaatgaT TCAGACCTGG muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ttct----tg cagttgctca ataaatattt gctgaatgaT TCAGACCTGG cow ttct----tg cagttgctca ataaatattc gctgaatgaT TCAGACCTGG horse ---------- ---------- ---------- ---------- ---------- armadillo ttct----tg cagttactca acaaatattt gctgaatgaC TCAGACCTGG elephant ttct----tg tggttgctta ataaatattt gcttaatgat tCAAACCTGG tenrec ttgt----tg cagtggctta ataaatattt gctgaatgaT TCAAATCTAG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGCAGACCAC CTATTTTACT TTAACATAAA TTAATTGCCT GGCAAGAGC- chimp AGCAGACCAC CTATTTTACT TTAACATAAA TTAATTGCCT GGCAAGAGC- gorilla AGCAGACCAC C--------- ---------- ---------- ---------- orangutan AGCAGACCAC C--------- ---------- ---------- ---------- gibbon AGCAGACCAC CTATTTTACT TTAACATAAA TTTATTGCCT GGCAAGAGC- colobus_monkey AGCAGACCAC CTATTTTACT TTAACATAAA TTTATTGCCT GGCAAGAGC- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AGCAGACCAC CTATTTTACT TTAACATAAA TTTATTGCCT GGCAAGAGC- dusky_titi AGCAGACCAC CTATTTTACT TTAACATAAA TTTATTGCCT GGCAAAAGC- owl_monkey AGCAGACCAC CTATTTTACT TTAACATAAA TGTATTGCCT GGCAAGAGC- squirrel_monkey AGCAGACCAC CTATTTTACT TTAACATAAA TTTATTGCCT GGCAAGAGC- marmoset AGCAGACCAC CTATTTTACT TTAACATGAA TTTATTGCCT GGCAAAAGC- galago AGCAGACCAC CGATTTGACT TTAACTTAAA TTGATTGT-- ----AAAGC- mouse_lemur AGCGGACCAC CTATTTTACT TTAACTTAAA TTTATTACCT GGCAAAAGC- lemur AGCAGACCAC CTATTTTACT TTGACTTAAA TTTATTACCT GGCAAGAGC- rabbit AGCAGACCAC C--------- ---------A CTTTCTGCCT GGCAAGAGC- st_squirrel AGCAGACCAC CTATTTTACT TGAAACTGAA TTTATTGACT GGCAAGAGC- guinea_pig AGCAGACCAC CCATTTCATT TTGAGCTTAA TTTGTTGCCT GGCAAAAGC- rat AGAAGACCAC CTATTCAAGA TTGAATTTGA TTTATTGCCT AGCAAGAGA- mouse ---------- ---------- ---------- ---------- ---------- hedgehog AGCAGACCAC TTATTTAACT TCAGTCTAAA TATATTGCCT GGAAAGAAG- shrew AGCAGACCAC CTATTTAACT T------AAA TTTATTGGTT GGCAAAAGC- rfbat ----GACTCC TTATTGTACT TGAACTTAAG TTTATTGCCT GGCAAGAAC- cpbat ---------- ---------- ---------- ---------- ---------- cat AGCAGACCAC CTATTTTACT TTAACTTAAA TTCATTGCCT GGCAAGAAC- clouded_leopard AGCAGACCAC CTATTTTACT TTAACTTAAA TTTATTGCCT GGCAAGAAC- ferret AGCAGACCAC CTATTTTACT TTAACTTAAA TTCATCGCCT GGCAAGAAC- dog AGCAGACCAC CTATTTTACT TTAACTTAAA TTTATTGCCT GGCAAGAAC- pig AATAGACCAC C-ATATTACT TTAACTTAAA TTTATTGCCT GGCAAGAAC- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep AGCAGACCAC C---TTTACT TTAACTTAGA TTTATTGCCT GGCAAGAAC- cow AGCAGACCAC CTATTTTACT TTAACTTAGA TTTATTGCCT GGCAAGAAC- horse ---------- ---------- ---------- ---------- ---------- armadillo GGCAGACCAC CTACTCTACC TTAACTTAAA TTGATTGCCT GGCAAGAGC- elephant AGCAGACCAC Ctattttaat ttaaatt--- -ttatTGCCT GGCAAGACC- tenrec ---------- -TATTTTATT TTAACTTAAA TTTATTGCCT GGCAAGACC- wallaby ---------- ---------- ---------- -----AGCCT GGCAGACTTC monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- -----AGCCT GGCAAACTTC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -CTGTGGAAC TTCAAATTCA CACTTCAGGA AAATTTCATT TT--CCCTCA chimp -CTGTGGAAC TTCAAATTCA CACTTCAGGA AAATTTCATT TT--CCCTCA gorilla ---------- ---------- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon -TTGTGGAAC TTCAAATTCA CACTTCAGGA AAATTTCATT TT-CCCCTCA colobus_monkey -CTGTGGAAC TTCAAATTCA CACTTTAGGA AAATTTCATT TT-CCCCTCA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque -CTGTGGAAC TTCAAATTCA CACTTTAGGA AAATTTCATT TT-CCCCTCA dusky_titi -TGGTGGAAC TTGAAATTTA CACTTTAGGA AAATTTCATG TT-CCCCTCA owl_monkey -CTGTGGAAC TTCAAATTCA CACTTCAGGA AAATGTTATT TT-CCCCTCA squirrel_monkey -CTGTGGAAC TTCAAATTCA CACTTTAGGA AAATTTCATT TT-CCCCTAA marmoset -CTGTGGAAC TTCAAATTCA CACTTCAGGA AAATTTCATT TT-CCCCTCA galago -CTGTGGAAC TTTGAAGTCA CACTTCAAGA AAATTTCATT TC-CTCCTCC mouse_lemur -CTGTGGAAC TTTGAATTCA CACTTTAAGA AAATTTCATT TC-CCCCTCA lemur -CTGTGGAAC TTTGAATTCA CAGTTCCAGA AAATTTCATT TC-CCCATCA rabbit -CTGTGGAAT TTTGAATTCA CACTTTAGGA AATTTCATTT TC-CTCCTCC st_squirrel -CTGTGGA-- ----AATTCA CACTTTAGGA AGATTTCATT TT-ACTCTTG guinea_pig -CTGTGGAAT TTTGAATTCA CGTTTTAGGG AAATGTCACT TT-TCCTTCA rat -CAGTAAAAT TTTGAACTCA CACATT---- ---------T TT-CCCCTCA mouse ---------- ---------- ---------- ---------- ---------- hedgehog -TTTTGGAAT TTTGGATTCA TAGTTTAGGA AATTTTCATT TT-CCTTTCA shrew -CTGTGGAAT TTTGAATTCA CATGCTAGGA AAATGCCATT TTCCCCCTCA rfbat -CTGTGGAAT TTTGAGCTCA TGCTTTAGGA AAATTTTGTT TT-CCCCTCA cpbat ---------- ---------- ---------- ---------- ---------- cat -CTGTGGAAT TTTGAATTCA CGCTTTAGGA AAATTTCATT TT-CTCCTCC clouded_leopard -CTGTGGAAT TTTGAATTCA CGCTTTAGGA AAATTTCATT TT-CTCCTCC ferret -CTGTGGAAT TTTGAATTCA CGCTTTAGGA AAATTTCATT TT-CTCCTCC dog -CTGTGGAAT TTTGAATTCA TGCTTTAGGA AAATTTCATT TT-CTCCTCC pig -CTGTGGAAT TTCGAATTCA CGCTTTAGGA AAATTTCATT TT-CCCCTCA muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep -CTGTGGAAT TTTGAATTCA CGCTTTAGGA AAATTTCATT TT-CCTCTCA cow -CTGTGGAAT TTTGAATTCA CGCTTTAGGA AAATTTCATT TT-CCCCTCA horse ---------- ---------- ---------- ---------- ---------- armadillo -CAGTGGAAT TTTGAATTCA TGCTTGAGGA AAATTTCATT TT-CTCCTCA elephant -CTGTGGAAT TTTGAATTCA CGCTTTAGGA AAATTTCATT TT-CCTCTCA tenrec -CTGTGGAAT TTTGAATTCA TGTTTCAGGA AAACTTCATT TT-CCCCTCA wallaby ACTGTGGAAT TTGAAATCTA TGCCTCAGTA AACTTTCCTT TT-CCCTGAA monodelphis ---------- ---------- ---------- ---------- ---------- opossum TCTCTGGAAT TCATAATCCA TCCCTTGGTG AACTTTCCTT TT-CCCCCAG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TATTAATTGT GATGTCAgac -------taa a-----gtga taaattgttg chimp TATTAATTGT GATGTCAgac -------taa a-----gtga taaattgttg gorilla ---------- -------gac -------taa a-----gtga taaattgttg orangutan ---------- -------gac -------taa a-----gtga taaattgttg gibbon TGTTAATTGT GATGTCAgac -------taa a-----gtga taaattgttg colobus_monkey TATGAATTGT GATGTCAgac -------taa a-----gtga taaattgttg vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TATTAATTGT GATGTCAgac -------taa a-----gtga taaattgttg dusky_titi TATTAATTGT GATGTCAggc -------taa a-----gtga taaattgttg owl_monkey TATTAATTGT GATGTCAgac -------taa a-----gtga taaattgttg squirrel_monkey TATTAATTGT GATGTCAgac -------taa a-----gtga taaattgtcg marmoset TATTAATTGT GATGTCA--- ---------- ---------- --------cg galago TATTAATTGT GATGTCAgct -------taa accaaagtga taaat---tg mouse_lemur TATTAATTGT GATGTCAaac -------taa agtaaagtga taaattggtg lemur TATTAATTGT GATGTCAaac -------taa agtaatgtga taaattggtg rabbit TATTAATTGT GATGTCAgac -------taa aataaagtga taaa-ctgtg st_squirrel TATTAATTGT GATGCCAtac -------tag aatCAAGTGA TAAATCTGTT guinea_pig TATTAATTGT GATGTCAgac -------cca agataagtga ga---ttggt rat CATCAATTAT GATGTCA--- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CATTAGTTGT AATGTCA--- ---------- ---------- ---------- shrew TGTTAATTCG GATGTCAGAC TGTTCAGTAA G-----CTGA CGAGTTGATG rfbat TATTAATTGT GATGTCA--- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat TATTAATTGT GACATCA--- ---------- ---------- ---------- clouded_leopard TATTAATTGT GACATCA--- ---------- ---------- ---------- ferret TATTAATTGT GAAATCA--- ---------- ---------- ---------- dog TATTAATTGT GATGTCA--- ---------- ---------- ---------- pig TATTAATTGT GATGTCA--- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TATTAATTAT GATGTCA--- ---------- ---------- ---------- cow TATTAATTAT GATGTCA--- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo TGTTAATTGT GATGTCAgac -------taa gataagctga taaattggtg elephant TATTAATTGT GAAGTCA--- ---------- ---------- ---------- tenrec CATTAACTGT GAAGTCA--- ---------- ---------- ---------- wallaby CACTAGTAGT GATGTCA--- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum TATCAGTGGT GATGTCA--- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human gaagagaaat ttgagaaaag tcacatt-aC -----TATTT GAAAAGGTTA chimp gaagagaaat ttgagaaaag tcacatt-aC -----TATTT GAAAAGGTTA gorilla gaagagaaat ttgagaaaag tcacatt-aC -----TATTT GAAAAGGTTA orangutan gaagagaaat ttgagaaaag tcacatt-ac -----tattt gaaaaggtta gibbon gaagagaaat ttgagaaaag tcacatt-aC -----TATTT GAAAATGCT- colobus_monkey gacgagaaat ttgagaaaag tcacatt-aC -----TATTT GAAAAGGTTA vervet ---------- ---------- ---------C -----TATTT GAAAAGGTTA baboon ---------- ---------- ---------- ---------- ---------- macaque gaagagaaat ttgagaaaag tcacatt-aC -----TATTT GAAAAGGTTA dusky_titi gaagagaaat ttgagaaaag tcacatt-ac -----tattt gaaaaagtta owl_monkey gaagagaaat ttgagaaaag tcacatt-ac -----tattt gaaaaggtta squirrel_monkey gaagagaaat ttgagaaaag tcacatt-aT -----TATTT gaaaaggtta marmoset gAAGAGAAAT TTGAGAAAAG TCACATT-AC -----TATTT GAAAAGGTTA galago gaagagaaat ttgggaagag tcgcatgaac -----tattt taaaaggtca mouse_lemur gaagagaaat ttgagaaaag tcgcatg-ac -----tattt taaaaggtta lemur gaagagaaat ttgagaaaag tcgcagg-ac -----tattt taaaaggtta rabbit gaagagaaat ttgagaaaag tcaaatt-Ac -----tattt aaaaaggtta st_squirrel GAAGAGAAAT TTTTTAAAAG TCAAATT-Aa -----aattt aaaaagatca guinea_pig gaa-aaAAAT TGAAGAAAAA CCAAATT-AA -----CTTTT AAAATGCCTA rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------C -----TTT-T TAAATG-ATA shrew GAAAAGAAAT TTGAGGAAGG CTAAATC-A- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------C ---------T AAAAAG-TTT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------c -----tat-t aaaaaggtta ferret ---------- ---------- ---------c -----tat-t aaaaaggtta dog ---------- ---------- ---------c -----tat-t aaaaaggtta pig ---------- ---------- ---------c -----tat-t aaaaagatta muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------c -----tat-t aaaatg-tta cow ---------- ---------- ---------c -----tat-t aaaatg-tta horse ---------- ---------- ---------- ---------- ---------- armadillo gaagaggaat ttgagaaaat tcaaatt-ac -----tattt aaaaaggtta elephant ---------- ---------- ---------c -----tattt aaaaaggtca tenrec ---------- ---------- ---------C -----TATTT TAAAAGGTCA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------a tggagca-ta taaacgttta platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAGAATAC-- ---AGGGA-A TTAAA---GC AGTTTACTTC CAAAAT--AA chimp AAGAATAC-- ---AGGGA-A TTAAA---GC AGTTTACTTC CAAGAT--AA gorilla AAGAATAC-- ---AGGGA-A TTAAA---GC AGTTTACTTC CAAAAT--AA orangutan aagaatac-- ---aggga-a ttaaa---gc agTTTACTTC CAAAAT--AA gibbon ---AATAC-- ---AGGGA-A TTAAA---GC AATTTACTTC CAAAAT--AA colobus_monkey AAGAATAC-- ---AGGGA-A TTAAA---GC AGTTTACTTC CAAAAT--AA vervet AAGAATAC-- ---AGGGA-A TTAAA---GC AGTTTACTTC CAAAAT--AA baboon ---------- ---------- ---------- ---------- ---------- macaque AAGAATAC-- ---AGGGA-A TTAAA---GC AGTTTACTTC CAAAAT--AA dusky_titi aagaatactt tacatgga-a ttaaa---gc agTTTACTTC CAAAAT--AA owl_monkey aagaatac-- ---aggga-a ttaaa---gc agTTTACTTC CAAAAT--AA squirrel_monkey aagaacac-- ---aggga-a ttaaa---ac agTTTACTTC CAAAAT--AA marmoset AAGAATACTT TACAGGGA-A TTGAA---GC AGTTTACTTC CAAAAT--AA galago aagaacgcag gg-aggga-a tgaag---gc agTTTACTTC CAAAAT--AA mouse_lemur aaggatat-- ---aggga-a tgaag---gc agTTTACTTC CAAAAT--AA lemur aaggatat-- ---aggga-a tgaag---gc agTTTACTTT CAAAAT--AA rabbit agggttat-- ---aggaa-a tgaag---gc agTTTACTTC AAAAAT--AA st_squirrel aatAATAT-- ---AGGAA-A TAAAG---GC AGTTTATTTT CAAAAT--AA guinea_pig AAATATAT-- ---CGAGA-A TGAAG----- -GTTTACTTT CAAAAT--AA rat ---------- ---------- ---------- --TTTACTCT CACAGT--AA mouse ---------- ---------- ---------- ---------- ---------- hedgehog GAGGTTAT-- ---AGGG--- ---------C AGTTTATTTC TAAAAT--AA shrew -----TAT-- ---AGAGA-A TGGAA----C ATTTTATTTC AAAAAT--AA rfbat ---------- ---------- ---------- --T-TCTTTC CAAAAT--AA cpbat AAAGTTTT-- ---AGAGA-A AAAAAG--GC AGTCTGCTTC CAAGTT--AA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard aaggctat-- ---agcaa-a agaag---gc agTTTACTTC CAAAAT--AA ferret aaggttat-- ---aggga-a tgaaa---gc agTT-----C CAAAAT--AA dog aaggttat-- ---aggga-a tgaag---gc agTTTACTTC CAAAAT--AA pig aaggttat-- ---aggga-a tgaaggcagc agTTTACTTC CAAAAT--AA muntjak_indian ---------- ---------- ---------- --ATTTCTTC CAAAAT--AA sheep aaggttat-- ---aggga-a tgaag---gc agTTTTCTTC CAAAAT--AA cow aaggttat-- ---aggga-a tgaag---gc agTTTTCTTC CAAAAT--AA horse ---------- ---------- ---------- ---------- ---------- armadillo aaggttat-- ---aggga-a tgaag---gc agTTACTATC AAAA-T--AA elephant aaggttat-- ---aggga-a tgaag---gc agTTTACTTC CAAA-T--AA tenrec AAGGTGAT-- ---AGGGA-A TGAAG---GC AGTCTAATTC CAAA-T--AA wallaby ---------- ---------- ---------- --GTTACTTT TCAAATCACA monodelphis ---------- ---------- ---------- ---------- ---------- opossum aggaatac-- ---aaggata tgaag---ac agTTTACTTT TCAAATCACA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTCCTTTT- ---AGGACAA TA----TCAG AAAGT-GAAT CCTTTGCG-- chimp TTTCCTTTT- ---AGGACAA TA----TCAG AAAGT-GAAT CCTTTGCG-- gorilla TTTCCTTTT- ---AGGACAA TA----TCAG AAAGT-GAAT CCTTTGCG-- orangutan TTTCCTTTT- ---AGGACAA TA----TCAG AAAGT-GAAT CCTTTGCT-- gibbon TTTCCTTTT- ---AGGACAA TA----TCAG AAAGT-GAAT CCTTTGCT-- colobus_monkey TTTCCTTTT- ---AGGACAA TA----TCAG AAAGT-GAAT CCTTTTCT-- vervet TTTCCTTTT- ---AGGACAA TA----TCAG AAAGT-GAAT CCTTTTCT-- baboon ---------- ---------- ---------- ---------- ---------- macaque TTTCCTTTT- ---AGGACAA TA----TCAG AAAGT-GAAT CCTTTTCT-- dusky_titi TTTCCTTTT- ---AGGAAGA TA----TCAG AGAGT-GAAT CCTTTGCT-- owl_monkey TTTCCTTTT- ---AGGAAGA TA----TCAG AGAGT-GAAT TCTTTGCT-- squirrel_monkey TTTCCTTTT- ---AGGAAGA TA----TCAG AGAGT-GAAT CCTTTGCT-- marmoset TTTCCTTTT- ---AGGAAGA TA----TCAG AGAGT-GAAT CCTTTGCT-- galago TTTCCTTTT- ---AGGAAGA TA----TCAG AAAGT-GAAT CCTTTCCA-- mouse_lemur TTTCCTTTT- ---AGGAAGA TA----TCAG AAAGT-GAAT TCTTTTCT-- lemur TTTCCTTTT- ---AGGAAGA TG----TCAG AAAGT-GAAT CCTTTTCT-- rabbit TTTCCTTTT- ---AGGAAGA TA----TCAG AAAGT-GCAT CCTTTGCT-- st_squirrel TTTCCTTTT- ---AGGAAAA TA----TCAT AAAGG-AAAT CCTTTGCT-- guinea_pig TTTCCGTTT- ---AGGAAGA TA----CAAG AAAAT-GAAT CCTTTTTC-- rat ATTTCTTTT- ---GGAAAGA TATCTTCCTA AAAGT-GAAT CCTTTGCT-- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTTCCTTCT- ---AGAAAGA TA----TCAG AAAAT-GAAT CCTTTGCTGC shrew TTTCCTTTT- ---AGGAAGA TA----TCAT AAAGT-ATAT CCTTGGGT-- rfbat TTTCATTTT- ---AGGAAGA TA----TCAG AAAGT-GATG TCTTTGCT-- cpbat TTTCCGTTT- ---AGGAAGA CA----TCAG AAAGT-GAAT TCTTTGCT-- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TTTCCTTTT- ---AGGAAGG TA----TCAG AAAGT-GAAT CCTTTGCT-- ferret TTTCCTTTT- ---ACAAAGA TA----TCAG AAAGTTGAAT CCTTTGCT-- dog TTTCCTTTT- ---AGGAAGA TA----TCAG AAAGT-GAAT CCTTTGCT-- pig TTTCCTTTT- ---AGGAAAA TA----TCAG AAAGT-GAAT CTTTTGCC-- muntjak_indian TTTCCTTTT- ---AGGAAGA TA----TCAG A--------- ---------- sheep TTTCCTTTT- ---AGGAAGA TA----TCAG A--------- ---------- cow TTTCCTTTT- ---AGGAAGA TA----TCAG A--------- ---------- horse ---------- ---------- ---------- -AAGT-GAAT CCCTTTCT-- armadillo TTTCTGTTT- ---AGGAAGA TA----TCAG AAAGT-GAAT CCTTTGCT-- elephant TTTCCTTTT- ---AGGAATC TA----ACAG AAAAT-GAAT CCTCTGCT-- tenrec TTTTCTTTG- ---AGGAAAA TA----TCAG AAAGT-GAAT CCTTTGCT-- wallaby TTTTTTTTT- -TCAGGAAAA TA----CCAT Gtggt-gctc attctact-- monodelphis ---------- ---------- ---------- ---------- ---------- opossum TTTCTTTTTC CTCAGGAAAA TA----CCAT GTAAT-GAGC ATTCTATA-- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- -TAGT--TAT TCTTAGCT-- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human --TATTTGCA TTAGGCTGAT TCATTCATTA CCTGAAATCT A-TTCTGCTT chimp --TATTTGCA TTAGGCTGAT TCATTCATTA CCTGAAATCT A-TTCTGCTT gorilla --TATTTGCA TTAGGCCGAT TCATTCATTA CCTGAAATCT A-TTCTGCTT orangutan --TATTTGCA TTAGGCTGAT TCATTCATAA CCTGAAATCT A-TTCTGCTT gibbon --TATTTGCA TTAGGCTGAT TCATTCATTA CCTGAAATCT A-TTCTGCTT colobus_monkey --TATTTGCA TTAGGCCGAT TCATTCATTA CCTGAAACCT A-TTCTGCTT vervet --TATTTGCA TCAGGCTGAT TCGTTCATTA CCTGAAATCT A-TTCTGCTT baboon ---------- ---------- ---------- ---------- ---------- macaque --TATTTGCA TCAGGCTGAT TCGTTCATTA CCTGAAATCT A-TTCTGCTT dusky_titi --TATTTGCA TTAGGCTGAT TC------TA CCTGAAATCT A-TTCTGCTT owl_monkey --TATTTACA TTAGGCTGAT TCATTCGTTA CCTGAAATCT A-TTCTGCTT squirrel_monkey --TATTTGCA TTAGGCTGAT TCATTCATTA CCTGAAATCT A-TTCTGCTT marmoset --CATTTGCA TTAGGCTGAT TCATTCGTTA CCTGAAATCT A-TTCTGCTT galago --CATTTGCA TCAGGCTGAT TCATTCATGA CCTGAAATCT A-TTCTGTTT mouse_lemur --TATTTGCA TCAGGCTGAA TCATTCACGA CCCGAGATCT A-TTCTGCTT lemur --TATTTGCA TCAGGCTGAT TCATTCATGA CCTGAAATCT C-TTCTGCTT rabbit --TATCTGCA CCAGGCTGAT TCACGCATGA CCCGAAATCT G-TTTTGCTT st_squirrel --TATTTGCA TTAAGCTGAT TCATTCATGA CCTGAAATCC A-TTTTTCTT guinea_pig --TATTTGCA TTAGGCTCAT TCCTTCACGA CCTGAAATCC A-TTTTGATT rat --TATTTGCA TCAGTCTGAT TCATTCATGA TCTGAAATGC A-TTTTGCCT mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTTATTTGCA TTCATTTGAT TCATTCATGA CCTAAAATCC A-TTTTGCCT shrew --CATTTGCA TTAGGCTGAT TTATTCATGA CAATAAATCA A-TTTTGTTT rfbat --TATTTGCA TTAGGCTGAT TCACTCATGT CTTGAAATCC A-TTCTGCTT cpbat --TATTTGCA TTATGTTGAT TCATTCATAA CTTGAAATCC A-TTTTGCTT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard --TATTTGCA TTAGGCCGAT TCATTCCTGA CTTGAAGTCC A-TTTTGCTT ferret --TATTTGCA TTAGGCTGAC TCATTCATGA CTTGAAGTCC A-TTTTGCTT dog --TATTTGCA TTAGGCTGAT TCATTCATGA CTTGAAGTCC A-TTTTGCTT pig --TACTTTCA TTAGGCTGAT TCGTTCATGA CTTGAAATCT A-TTTTGCTT muntjak_indian ---ATTTTCA TTAGGCTGAT TCATTCATGA CTTGAAATCC A-TATTGCTT sheep ---ATTTTCA TTAGGCTGAT TCATTCATGA CTTGAAATCC A-TATTGCTT cow ---ATTTTCA TTAGGCTGAT TCATTCGTGA CCGGAAATCC A-TATTGCTT horse --TATTTGCA TTAGGCTGAT TCATTCATGA CTTAAAACCC A-TTTTGCTT armadillo --TATTAACA TTAGGCTGAT TCATTCCTAG CCTGAGATCC A-TTTTACTT elephant --TATTCGCA TTAGGCTGAT TGATTCATAA CCTGAAATCC A-TTTTGCTT tenrec --TATTTGCC TCAGGCTGCT CCATTCACGA CCTG-AATTC A-TTTTGCTT wallaby --tATTTGCA TC----AGAT TCATTCATGG C-TGAAACCA A-TTTTGTCT monodelphis ---------- ---------- ---------- ---------- ---------- opossum --TTTTTGCA TCAAGTAGAT CCATTCATGA T-TGAAATCT A-TTAGATTT platypus ---------- ---------- ---------- ---------- ---------- chicken --TATTTGTA TGAGACTCTC TGA-----AA TATGAAATCT ACCCTTACTT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATATTAAAAT GGCTTTCGGC AGAGGGTGAA AAA----CCC TG-CCGGCAA chimp ATATTAAAAT GGCTTTCGGC AGAGGGTGAA AAA----CCC TG-CCGGCAA gorilla ATATTAAAAT GGCTTTCGGC AGAGGGTGAA AAA----CCC TG-CCGGCAA orangutan ATATTAAAAT GGCTTTCGGC AGAGGGTGAA AAA----CCC TG-CCGGCAA gibbon ATATTAAAAT GGCTTTCGGC AGAGGGTGAA AAA----CCC TG-CCGGCAA colobus_monkey ATATTAAAAT GGCTTTGGGC AGAGGGTGAA AAA----CCC TA-CCGGCAA vervet ATATTAAAAT GGCCTTCGGC AGAGGGTGAA AAA----CCC TG-CCGGCAA baboon ---------- ---------- ---------- ---------- ---------- macaque ATATTAAAAT GGCCTTCGGC AGAGGGTGAA AAA----CCC TG-CCGGCAA dusky_titi ATATTAAAAT GGCTTTCGGC AGAGGGTGAA AAA----CCC TG-CTGGCAG owl_monkey ATATTAAAAT GGCTTTTGGC AGAGGGTGAA AAA----CCC TG-CCGGCAG squirrel_monkey ATATTAAAAT GGCTTTTGGC AGAGGGTGAA AAA----CCC TG-CCGGCAG marmoset ATGTTAAAAT GGCTTTTGGC AGAGGGTAAA AAA----CCC TG-CCGGCAG galago ATATTTAAAT GGTTTTCTAC AGAGGGTAAA AAA----TCC TG-CCGGCAA mouse_lemur ATATTAAAAT GTTTTTTTGC AGAGGGTGAA AAA----TCC TG-CAGGCAA lemur ATATTAAAAT GGTTTTCTGC AGAGGGTGAA AAA----TCC TG-CAGGCTA rabbit GTATTAAAAT AGTTTTCTGC AGAG--TGAA AAA----TCC TGCCTGGCCA st_squirrel ATAT-----T AGTTTTCTGC AGAGGATGAA AAA----TCC -G-TTGGCAA guinea_pig ATATTAAAAT AGTTTTTCAC CAAGTATGAA AAA----TCC TG-CTGGCAA rat ATATTAAAAT AGTTTTCTTC GAGGATGAAA AAA----GCC TG-CTGGCAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog ATATTAAAAC AGCTGTCTGC AGAGGGTGAA AAA----TCC TG-CTGGCAA shrew ATATTAAAAT GGATTTTTGT AGATGGTTAA AAA----TGC CG-CCTGCTA rfbat ATATTAAAAT AGTTTTCTGC AGAGGATAAA GAA----TCC TG-CCGGAAA cpbat ATGTTAAAAT AGTTTTCTGC AGAGGATGAA GAA----TCC TG-CTGGAAA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ATATTAAAAT GTTTTTCTGC AGAGGGTGAA AAA----TCC TG-CCGGCAA ferret ATATTAAAAT GGTTTTCTGC AGAGGGTGAA AAA----TCC TG-CTGGCAA dog ATATTAAAAT GGTTTTCTGC AGAGGGTGAA AAA----TCC TG-CCGGCAA pig ATATTGAAAT GGTTTTCTGC AGAGCGT-AA AAA----TCC TG-CCGGATT muntjak_indian ATATTGAAAT GATTTTCTGC AGAGGGT-AA AAA----TCC TG-CCGGCAA sheep ATATTGAAAT GATTTTCTGC AGAAAGT-AA AAA----TCC TG-CCGGCAA cow ATATTTTAAT GATTTTCTGC AGAGGGT-AA AAA----TTC TG-CCGGCAA horse ATACTAAAAT GGTTTTCTGC AGAGGGTGAA AAA----TCC TG-CCGGCAA armadillo CTATTAAAAT GGTTTTTTGC AAAGG-GGGA AAA----TCC TA-CTGGCAA elephant ATATTTAAAT GGTTTCCTGC AAAGGAAGAA AAA----TTT TG-CTAGCAA tenrec GTATTTAAAT GGTTTTCTGC AGAGGAAGGA AAA----TCC TG-CTAGCAA wallaby ATATGAAAAT GGTTTTCAGG CAAAGGGGAA AAATAGATCC TG-CAGACTA monodelphis ---------- ---------- ---------- ---------- ---------- opossum ATATTAAAAT ACTTTTCAGA AAAGGGAAAA AAAAAGGTCC TA-CAGATTA platypus ---------- ---------- ---------- ---------- ---------- chicken ATATTTAAAT AG-------- ---------- -------TTC TT-CAGTCTA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TC------A- GAGCATTCTG TGACATTCAA GTCTGCCCAG AGTACAG-AT chimp TC------A- GAGCATTCTG TGACATTCAA GTCTGCCCAG AGTACAG-AT gorilla TC------A- GAGCATTCTG AGACATTCAA GTCTGCCCAG AGTACAG-AT orangutan TC------A- GAGCATTCTG TGACATTCAA GTCTGCCCAG AGTACAG-AT gibbon TC------A- GAGTATTCTG TGACATTCAA GTCTGCCCAG AGTACAG-AT colobus_monkey TC------A- GAGCATTCTG TGACATTCAG GTCTGCCCAG AGTACAG-AT vervet TC------A- GAGCATTCTG TGACATTCAG GTCTGCCCAG AGTACAG-AT baboon ---------- ---------- ---------- ---------- ---------- macaque TC------A- GAGCATTCTG TGACATTCAG GTCTGCCCAG AGTACAG-AT dusky_titi TC------A- GAGGATTCTG TGACATTCAA GTCGGCCCAG AGTACAG-AT owl_monkey TC------A- GAGGATTCTG TGACATTCAA GTCGGCCCAG AGTACAG-AT squirrel_monkey TC------A- GAGGATTCTG TGACATTCAA GTCGGCCCAG AGTACAG-AT marmoset TC------A- GGGGATTCTA TGATATTCAA ATCGGCCCAG AGTACAG-AT galago TC------A- GAGGATTCTG TGACATTCAA GTTTGCCCAG AGCACAG-GT mouse_lemur TC------A- GAGGATTCCG TGACATTCAA GTCTGCCCAG AGTACAG-GT lemur TC------A- GAGGATTCCG TGACATTCAA GTCTGCCCAG AGTACAA-GT rabbit TC------A- GAGGGTCCTG TGACATTCAG GTCTGCCCAG AGTACAG-AT st_squirrel TC------A- GAGGATACTG TGACATTCAA GTCTGCCCAG AGTACAG-CT guinea_pig TT------A- GCAGATCCTG TGACATTCAA GTCTGCCCAG AGTACAG-AT rat TC------A- GAGGCTTGTG TGACATTCAA GTCTACCCAG AGTACAG-AT mouse ---------- ---------- ---------- ---------- ---------- hedgehog TC------AA GAGGATTGTG TGACATTCAA GTCTGCCCTG AGTACAG-AT shrew TC------A- GAGAATTGTG TGACATTCAG GTCTACCCAG TGTACAG-AT rfbat TC------A- GAGGACTGTG TGACATTCAA GTCTGCCCCG ACTACAG-AT cpbat TC------A- G--GATTGTG TGACATTCAA GTCTGCACAG AGTACAG-AT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TC------A- GAGGACTGTG TGACATTCAA GTCTGCCCAG AG-------T ferret TC------A- GAGAATTGTG TGACATTCAA GTCTGCCCAG AGTACAGGAT dog TC------A- GAGGATTGTG TGACATTCAA TTCTGCCCAG AGTACAG-AT pig TTGTTTTCA- GAGGATTGTG TGACATTAGA GTCTGCTCAG AGTACAG-AT muntjak_indian TT------A- GAGGATTGTG TGACATTCAA GTCTGCCTAG AGCACAG-AT sheep TT------A- GAGGACTGTG TGACATTCAA GTCTGCCCAG AGTACAG-AT cow TT------A- GAGGATTGTG TGACATTCAA GTCTGCCCAG AGTACAG-AT horse TC------A- GAGGACTGTG TGACATTCAA GTCTGCCCAG AGTACAG-AT armadillo TC------A- CAGGATTGTG TGACATTCAA GTCTGCCCAT AGTACAG-AT elephant TC------A- AAGGATCGTG TGACATTCAA GGCTGCCCAG AGTACAG-AT tenrec TC------A- AAGGATCATG TGATAGT-AA GTCTGCCCAG AGTACAG-AT wallaby TC------A- GAGGGTGATG TGGCACACAG ATATGTTCGG AATAAAG-TT monodelphis ---------- ---------- ---------- ---------- ---------- opossum TC------A- CAGGACAATG TAGCATGTGG ATAGGTTCAG AAAATAG-TT platypus ---------- ---------- ---------- ---------- ---------- chicken AC------T- G-GGATAATG TAACACGCAG CTATAGCCCG TG-ATAG-TT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTGCATTGTT C-ACTAACCT TCCTGTGCCA AAAA------ ---------- chimp TTGCATTGTT C-ACTAACCT TCCTGTGCCA AAAA------ ---------- gorilla TTGCATTGTT C-ACTAACCT TCCTGTGCCA AAAA------ ---------- orangutan TTGCATTGTT C-ACTAACCT TCCTGTGCCA AAAA------ ---------- gibbon TTGCATTGTT C-ACTAACCT TCCTGTGCCA AAAA------ ---------- colobus_monkey TTGCATTGTT C-ACTAACCT TTCTGTGCCA AAAA------ ---------- vervet TTGCATTGTT C-ACTAACCT TTCTGTGCCA AAAA------ ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TTGCATTGTT C-ACTAACCT TTCTGTGCCA AAAA------ ---------- dusky_titi TTGCATTGTT C-GCTAACCT TCCTGTGCCA AAAA------ ---------- owl_monkey TTGCATTGTT C-GCTAACCT TCCTGTGCCA AAAA------ ---------- squirrel_monkey TTGCATTGTT C-GCTAACCT TCCTGTGCCA AAAA------ ---------- marmoset TTGCATTGTT C-GCTAACCT TCCTGTGCCA AAAA------ ---------- galago TGGTATTGTC CTGCTAACTT TCCTACGCCA AAAA------ ---------- mouse_lemur TTGCATTGTT CTGCTAACTT TCCTTTGCCA AAAA------ ---------- lemur TTGCATTGTT CTGCTAACTT TCCTTTGCCA AAAA------ ---------- rabbit CTGCATTGTC CTGTTAACTT CCCTGTGCCA AAAA------ ---------- st_squirrel TTGCATTGTT CTGCTAACTT TCCTATGCCA AAAA------ ---------- guinea_pig TTGCATTGTT CTGCTAACTT TCCTATGCCA AAAA------ ---------- rat TTGCATTGTC CTGCTAACTT TCCTGTGCCA AAAA------ ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTGCATTGTT CTGCTAACTT TCCTATGCCA AGAA------ ---------- shrew TTGCATTGTT CTGCTAGCTC TTCTATGCCA AGAA------ ---------- rfbat TTGCATTGTT CTGCTAACTT TCCTGTGCCA AAAG------ ---------- cpbat TTGCATTGTT CTGCTAACTT TCCTATGCCA AAAA------ ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TTGCATTGTT CTGCTAACTT TACTATGCCA AAAA------ ---------- ferret TTGCATTGTT CTGCTAAATT TACTATGCCA AAAA------ ---------- dog TTGCATTGTT CTGCTAACTT TACTATGCCA AAAA------ ---------- pig TTGCATTGTT CTGCTAACTT GTCTGTGCCA AAAA------ ---------- muntjak_indian TTGCATTGTT CTGCTAACTT TCATATGCCA AAAA------ ---------- sheep TTGCATTGTT CTGCTAACTT TCCTATGCCA AAAA------ ---------- cow TTTCATTGTT CTACTAACTT TCCTATGCCA AAAA------ ---------- horse TTGCATTGTT CTGCTAACTT TCCTATGCCA AAAA------ ---------- armadillo TTGCATTGTT CTGCTAACTT TCCTATGCCA AAAA------ ---------- elephant TTGCATTGTC CTGTTAACTT TCCTATGCCA AAAA------ ---------- tenrec TCACATTGTC TCACTACCTT GTCTATGCCA GAAA------ ---------- wallaby TTGCATTGTT CTGCTAACTT TGCTATGCCA AAAT------ ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum TTGTATTGTT CTGTTAACTT TGCTATGCCA AAAT------ ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken CTGCATTGTT CTTTTAACTG CGTGATGCCA AAAAATAATA ATAATAAAGA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT chimp -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT gorilla -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT orangutan -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT gibbon -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT colobus_monkey -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT vervet -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT baboon ---------- ---------- ---------- ---------- ---------- macaque -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT dusky_titi -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT owl_monkey -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT squirrel_monkey -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT marmoset -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT galago -CACTCAGTC GCTCCCTTTC CCCAGCCTCT AAGGTCACAA GACAGACAGT mouse_lemur -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT lemur -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT rabbit -CACTCAGTT GTTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT st_squirrel -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT guinea_pig -CACTCAGTT GTTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT rat -CACTCAGTC GCTCCCTTTC ACCAACCTCT AAGGTCACAA GACAGACAGT mouse ---------- ---------- ---------- ---------- ---------- hedgehog -CACTCAGTT GTTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT shrew -CACTCAGTC ACTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT rfbat -CACTCAGTT GCTCCCTTTC ACCAGCTTCT AAGGTCATAA GACAGACAGT cpbat -CACTCAGCT GCTCCATTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard -CACTCAGTT GCTCCCTTTC ACCAGCG-TT AAGGTCACAA GACAGACAGT ferret -CACTCAGTT GCTCCCTTTC ACCAGCCTTT AAGGTCACAA GACAGACAGT dog -CACTCAGTT GCTCCCTTTC ACCAGCATTT AAGGTCACAA GACAGACAGT pig -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCATAA GACAGACAGT muntjak_indian -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCATAA GACAGACAGT sheep -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCATAA GACAGACAGT cow -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCATAA GACAGACAGT horse -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT armadillo -CACTCAGTT GCTCTCTTTC ACCAGCCTCT AAGGTCATAA GACAGACAGT elephant -CACTCAGTT GCTCCCTTTC ACCAGCCTCT AAGGTCACAA GACAGACAGT tenrec -CAGGCAGTT GCTCCCTTTC ACGAGCCTCT AAGGTCACAA AACAGACAGT wallaby -CACTCAGTT GTTCCCTTTC ACCAGCCTGT AAGGTCACA- ---AGACAGT monodelphis ---------- ---------- ---------- ---------- ---------- opossum -CACTCAGTT GTTCCCTTTC ACCAGCCTGT AAGGTCACA- ---AGACAGT platypus ---------- ---------- ---------- ---------- ---------- chicken GAAATGCTTT GTTCCCTTTC ACTGGCCTAG AAGGTCACAA AACAGACAGT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCG---- chimp TCTTTCTTGA TTACTC---A AACAAATACA CATCTGATTC AGAGCG---- gorilla TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCG---- orangutan TCTTTCTTGA TTACTC---A AACAAATACA TGTCTGATTC AGAGCG---- gibbon TCTTTCTTGA TTACTC---A AACAAATACA CGCCTGATTC AGAGCG---- colobus_monkey TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCA---- vervet TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCG---- baboon ---------- ---------- ---------- ---------- ---------- macaque TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCG---- dusky_titi TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCA---- owl_monkey TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCA---- squirrel_monkey TCTTTCTTGA TTACTC---A AACAAATACA CATCTGATTC AGAGCA---- marmoset TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCA---- galago TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCT---- mouse_lemur TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCA---- lemur TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGCA---- rabbit TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGGG---- st_squirrel TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGTG---- guinea_pig TCTTTCTTGA TTACTC---A AACAAATACA CGCCTGATTC AGAGGG---- rat TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGGA---- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TCTTTCTTGA TTACTC---A AACAAATACA TGTCTGATTC AGAGCA---- shrew TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGTA---- rfbat TCTTTCTTGA TTACTC---A AACAAATACA TGTCTGATTC AGAGGG---- cpbat TCTTTCTTGA TTACTC---A AACAAATACA TGTCTGATTC AGAGGG---- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGTG---- ferret TCTTTCGTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGTG---- dog TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGTG---- pig TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGGG---- muntjak_indian TCTTTCTTGA TTACTC---A AACAAATACA TGTCTGATTC AGAGGG---- sheep TCTTTCTTGA TTACTC---A AACAAATACA TGTCTGATTC AGAGGG---- cow TCTTTCTTGA TTACTC---A AACAAATACA TGTCTGATTC AGAGGG---- horse TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGAG---- armadillo TCCTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGGCGTGG elephant TCCTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGGG---- tenrec TCTTTCTTGA TTACTC---A AACAAATACA CGTCTGATTC AGAGGAG--- wallaby TCCTTCTTGA TTACTC---A AACAAACACC AGTCTGATTC ACAGAG---- monodelphis ---------- ---------- ---------- ---------- ---------- opossum TCCTTCTTGA TTACTC---A AACAAACACT AGTCTGATTC ACAGAG---- platypus ---------- ---------- ---------- ---------- ---------- chicken TCCTTCTTGA TTACACTCTA AATAAATAAA AGCCTGATTC ACAGAG---- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human --------GG G-AAA-AAAG AGTTGCCAAC AGTCAAG-GC TTAGAAAGGC chimp --------GG G-AAA-AAAG AGTTGCCAAC AGTCAAG-GC TTAGAAAGGC gorilla --------GG G-AAA-AAAG AGTTGCCAAC GGTCAAG-GC TTAGAAAGGC orangutan --------GG G-AAA-AAAG AGTTGCCAAC AGTCAAG-GC TTAGAAAGGC gibbon --------GG G-AAA-AAAG AGTTGCCAAC AGTCAAG-GC TTAGAAAGGC colobus_monkey --------GG G-AAA-AAAG AGTTGCCAAC AGTCAAG-GC TTAGAAAGGC vervet --------GG GAAAA-AAAG AGTTGCCAAC AGTCAAG-GC TTAGAAAGGC baboon ---------- ---------- ---------- ---------- ---------- macaque --------GG G-AAA-AAAG AGTTGCCAAC AGTCAAG-GC TTAGAAAGGC dusky_titi --------GG G-AAA-AGAG AGTTGCCAAC AGTCAAA-GC TTGGAAAGGC owl_monkey --------GG G-AAA-ACAG AGTTGCCAAC AGTCAAA-GC TTGGAAAGGC squirrel_monkey --------GG G-AAA-ACAG AGTTGCCAAC AGTCAAA-GC TTGGAAAGGC marmoset --------GG G-AAA-ACAG AGTTGCCAAC AGTCAAA-GC TTGGAAAGGC galago --------GG G-AAG-AGAG AGTTGCCAAC AGTCAACTGC CTAGGAAGGG mouse_lemur --------GG G-AAG-AGAG AGTTGCCAAC AGTCAAC-GC TTAGGAAGGG lemur --------GG G-AAG-AGAG AGTTGCCAAC AGTCAAC-GC TTAGGAAGGG rabbit --------GG A-AAA--GAG AGTTGCCAAC AGTCGAC-GC TTAGGAAGGG st_squirrel --------GG G-AAA-AGAG AGTTGCCAAC AGTCAAT-GC TTAGGAAGGG guinea_pig --------GG G-AAA---AG AGTTGCCAAC CGTCGAC-GT TTAGGAAGGG rat --------GG G-AAA---AG AGTTGCCAAC AGTCAAT-GC TTAGGAAGGG mouse ---------- ---------- ---------- ---------- ---------- hedgehog --------GG G--AA-AGAC AGTTGCCAAC AGTCAAT-GC TTAGGAAAGG shrew --------GG GGAAA-AGAG AGTTGCCAGA AGTCAAA-GC TTAGGAAAGG rfbat --------GG G-AAA-AGAG AGCTGCCAAC AGTGAAC-GC TTAGGAAGGG cpbat --------GA G-AAA-AGGG AGCCGCCAAC AGTCAAC-GC TAAGGAAGGG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard --------GG G-AAA-AGAG AGTTGCCAAC AGTCAAT-GC TTAGGAAGGG ferret --------GG A-AAA-AGAG AGTTGCCAAC AGTCAAA-GC CTAGGAGGGG dog --------GG G-AAA-AGAG AGTTGCCAAC AGTCAAT-GC TTAGGAAGGG pig --------GG G-AAA-AGAA AGTTGCCAAC AGTCAAC-AT TTAGGAAGGG muntjak_indian --------GG G-AAA-AAAG AGTTGCCAAC AGTCAAC-GC TTAGGAAGGG sheep --------GG G-AAA-AGAG AGTTGCCAAC AGTCAAT-GC TTAGGAAGGG cow --------GG G---A-AGAG AGTTGCCAAC AGTCAAC-GC TTAGGAAGGG horse --------GG G-AAA-AGAG AGTTGCCAAC AGTCAGT-GC TTAGGAAGGG armadillo GGGAAGGGGG G-GGG-GGGG AGTTGCCAAC AGCCAAA-GC TTAGGAAGGG elephant --------AA G-AAA-AGAG AGTTGCCAAC AGTCAAT-GC TTAGGAAGGG tenrec -----GTTGG G-GGT-GGGG AGCTGCAAAC AGTCAAC-AC TTAGAAAGGG wallaby --------GG G-AAACAAGG ATTTGCCAAC AGTCAAA-CC CTATGAAGGC monodelphis ---------- ---------- ---------- ---------- ---------- opossum --------GG G-AAACAAGG ATTTGCCAAC AGTCAAG-CC CTATGAAGGG platypus ---------- ---------- ---------- ---------- ---------- chicken --------GC G-AAACAATC ATCTGCCAAC TGCCAAA-CC CTATAAAGGG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAC CACATCCATG chimp CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAC CACATCCATG gorilla CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAC CACATCCATG orangutan CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAC CACATCCATG gibbon CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAC CACATCCATG colobus_monkey CAGGGCTGCT TGTAC-TTAG AAGCCAGCCT GATGAATCAC CACATCCATG vervet CAGGGCTGCT TGTAC-TTAG AAGCCAGCCT GATGAATCAC CACATCCATG baboon ---------- ---------- ---------- ---------- ---------- macaque CAGGGCTGCT TGTAC-TTAG AAGCCAGCCT GATGAATCAC CACATCCATG dusky_titi CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAT CACATCCATG owl_monkey CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAT CACATCCATG squirrel_monkey CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAT CACATCCATG marmoset CAGGGCTGCT TGCAC-TTAG AAGCCAGCCT GATGAATCAT CACATCCATG galago CAAGGCTGCT TTCGCTTTTT AAGCCAACCT GATGAATCAT CACATCCATG mouse_lemur CAAGGCTGCT TTCGCTTTTT AAGCCAACCC GATGAATCAC CATATCCATG lemur CAAGGCTGCT TTCGCTTTTT AAGCCAACCC GATGAATCAC CATATCCATG rabbit CAGGGCTGCT TTCGCTTTTT AAGCCAACCT GATGAATCAC CACTTGCATG st_squirrel CAAGGTTGCT TTCACTTTAT AAGCCAACCT GATGAATCAC CACATCCATG guinea_pig CAAGGCTGCT TTCACTTTAT AAGCCAACCT GATGAATCAC CACGTCCATG rat CAAGGCTGCC TTTGCTTTAT AAGCCAGCCT GATGAATCAC CACGTCCATG mouse ---------- ---------- ---------- ---------- ---------- hedgehog CAAGGCTGCT TTCATTTTGT AAGCCAAACT GATGAGTCAC CACATCCATG shrew CAAAGCTGCT TTCACTTTTT AAGCCAACCT GATGAATCAC CACATCCATG rfbat CAAGGCTGCT TTCACTTTAT AAGCCAACAT GATGAATCAC CACATCCATG cpbat CAAGGCTGCT TTCACTTTTT AAGCCAAACT GATGAATCAC CACATCCATG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CAAGGCTGCT TTTGCTTTTT AAGCCAACCT GATGAATCAC CACATCCATG ferret CAAGGCTGCT TTCGCTTTTT AAGCCAACCT GATGAATCAC CACATCCATG dog CAAGGCTGCT TTCGCTTTTT AAGCCAACCT GATGAATCAC TGCATCCATG pig CAAGGCTGCT TTCGCTTTTT AAGCCAACCT GATGAATCAT CACATCCATG muntjak_indian CAAGGCTGCT TTCGCTTTTT AAGCCAACCT GATGAATCAC CACATCCATG sheep CAAGGCTGCT TTCGCTTTTT AAGCCAACCT GATGAATCAC CACATCCATG cow CAAGGCTGCT TTCGCTTTTT AAGCCAACCT GATGAATCAC CACGTCCATG horse CAAGGCTGCT TTCGCTTTTG AAGCCAACCT GATGAATCAC CACCTCCATG armadillo CAAGGCTGCT TTCACTTTAT AAGCCAACCT GATGAATCAC CACATCCATG elephant CAAGGCCGCT TTCAATTTTT AAGCCAACCT GATGAATCAC CACATCCATG tenrec CAAGGCTGCT TTCGATTTTT AAGCCAACCT GATGAATCAT CACATCCATG wallaby TAAGCCTGCT TTCACTTTTT GAGCCAACCT GATGACTCAC CACCCCTCTG monodelphis ---------- ---------- ---------- ---------- ---------- opossum TAAATCTGCT TTCACTTTTT GAGCCAACCT GATGACTCAC AACCCCGATG platypus ---------- ---------- ---------- ---------- ---------- chicken TAAATCTGCT TTTACTTTGT GAGCCAGAGC GATGAGTCAC CGAGGCTATG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ACTAAT---T GTGGGG---- TTCAAGTGTG CCCAGTTATA ctatgatgaa chimp ACTAAT---T GTGGGG---- TTCAAGTGTG CCCAGTTATA ctatgatgaa gorilla ACTAAT---T GTGGGG---- TTCAAGTGTG CCCAGTTATA ctatgatgaa orangutan ACTAAT---T GTGGGG---- TTGAAGTGTG CTCAGTTATA ctatgacgaa gibbon ACTAAT---T GTGGGG---- TTCAAGTGTG CCCAGTTATA ctatgatgaa colobus_monkey ACTAAT---C GTGGGG---- TTCAAGTATG CCCAGTTATA ctatgagtaa vervet ACTAAT---C ATGGGG---- TTCAAGTATG CCCAGTTATA ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TCTAAT---C GTGGGG---- TTCAAGTATG CCCAGTTATA ctatgattaa dusky_titi ACTAAT---T GTTGGG---- TTCAAGTGTG CCCAGTTACG ---------- owl_monkey ACTAAT---T GTTGGG---- TTCAAGTGTG CCCAGTTACA ---------- squirrel_monkey ACTAAT---T GTTGGG---- TTCAAGTGTG CCCAGTTACA ---------- marmoset ACTAAT---T GTTGGG---- TTCAAGTGTG CCCAGTTACA ---------- galago ACTAAT---T GTGGCA---- TTAAAATGTG CCCAGTTATA ---------- mouse_lemur ACTAAT---T GTGGCA---- TTAAAATGTG CCCAGTTATA ---------- lemur ACTAAT---T GTGGCA---- TTAAAATGTG CCCAGTTATA ---------- rabbit ACTAAT---T GTGGTG---- CTAAAATATG CCCAGTAATA ---------- st_squirrel ACTAAT---T GTGGTA---- TTAAAATTTG CCCAGTAATA ---------- guinea_pig ACTAAT---G CTGGTG---- TTCAAATGTG CCTGGTAATG ---------- rat ACTAAT---T GTGGTG---- TTAAAATGTG CCCAGGAATA ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ACTAAT---T GTGGTG---- TTAAAATGTG CCCAGTAATA ---------- shrew ACTAAT---T GTGGTG---- TTAAAATGTG CCCAGTAGTA ---------- rfbat ACTAAT---C GTGGTG---- TTAAAATATG CCTAGTAATA ctataatgaa cpbat ACGAAT---T GGGGTG---- TTAAAATGTG CCCAGTAATA ctataatgaa cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ACTAAT---T GTGGTG---- TTAAAATGTG CCCAGTAATA ---------- ferret ACTAAT---T GTAGTG---- TTAAAATGTG CCCTGTAATA ---------- dog ACTAAT---T GTGGTG---- TTAAAATGTG TCCAGTAATA atatgatgaa pig ACTAAT---T GTGGTA---- TTAAAAGGTG CCCAGTAATA ---------- muntjak_indian ACTAAT---T GTGGTA---- TTAAAATGTA CCCAGTAATA ---------- sheep ACTAAT---T GTGGTA---- TTAAAATGTA CCCAGTAATA ---------- cow ACTAAT---T GTGGGA---- TTAAAATGTA CCCAGTAATA ---------- horse ACTAAT---T GTGGTG---- TTAAAATGTG CCCAGTAATA ---------- armadillo ACTAAT---T GTTGTG---T TAAAAATGTG CCCAGTAACA ---------- elephant ACTAAT---T GTGGGG---- TGAAAATATG CCCAGTGATA ---------- tenrec ACTAAT---C GTGGTG---- CGAAAATGTG CCCAGTAAGA ---------- wallaby ACTAAC---T GTGGTGAGCA TTAAAATGTA CCCAATTACA ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ACTAAC---T GTGGTAAGCA TTAAAATGTA CCCAATTACA ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ACTAATACCA GCAAGA---- ATTAAATGTA CCCACCAAAA ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human atttagttaa aaatc----- --aaaacaaa aagataacta g-aaaaaaac chimp atttagttaa aaatc----- --aaaacaaa aagataacta g-aaaaaaac gorilla atttagttaa aaatc----- --aaaacaaa aagataacta g-aaaaaaac orangutan atttagttaa aaatc----- --aaaacaaa aagataacta g--aaaaaac gibbon atttagttaa aaatc----- --aaaacaaa aagataacta g-aaaaaaac colobus_monkey atgtagttaa aaatc----- --aaaacaaa aagataacta gaaaaaaaac vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque atgtagttaa aaatc----- --aaaactaa aagataactc ggaaaaaaac dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat attttgctaa aaattcaaaa aaaaaaaaaa aagaaaacta g-aaaaa--- cpbat attttgctaa atttc----- --acaacaaa aagatattta g-aaaaa--- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog attttgttaa aaatcaaaac aa-------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human acagtatgtt tagaagaaaa ccacaactaa ataacccatg agccaaagat chimp acagtatgtt tagaagaaaa ccacaactaa ataacccatg agccaaagat gorilla acagtatgtt tagaagaaaa ccacaactaa ataacccatg agccaaagat orangutan acagtacgtt tggaagaaaa ccacaactaa ataacccatg agccaaagat gibbon acagtatatt tggaaggaaa ccacaactaa ataacccatg agccaaagat colobus_monkey acaatatgtt tggaagaaaa tcacaactaa atcatccatg agccaaagat vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque acaata--tt tggaagaaaa tcacaactaa ataacccata agccaaagat dusky_titi ---------- ---------- ---------- ---------- ---------- owl_monkey ---------- ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---------- galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat --catatgct tggaagaaaa ccacctctaa ataacccatg ggtcaaagat cpbat attatatggt tggcaggaaa tcacttctaa ataacccatg ggttaaagat cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human aaaatcataa TCCAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT chimp aaaatcataa TCTAAAAGCA ATTTTGTGAG ----GCAGA- CAGAATTCCT gorilla aaaatcataa TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT orangutan aaaatcataa TC--AAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT gibbon aaaatcataa TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT colobus_monkey aaaatcataa -CTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT vervet ----TCATAA TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT baboon ---------- ---------- ---------- ---------- ---------- macaque aaaatcataa TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT dusky_titi ---------- TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT owl_monkey ---------- TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT squirrel_monkey ---------- TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT marmoset ---------- TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT galago ---------- TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT mouse_lemur ---------- TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT lemur ---------- TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT rabbit ---------- TCT-AAAGCA AGTTTATGAG ----ACATA- CAG--TCCCT st_squirrel ---------- TCTAAAAGCA ACTTTATAAG ----GCAGA- CAGGATTCCT guinea_pig ---------- TCTAAAAGCA ACTTTATGAG ----GCAGG- CAGGATTCCT rat ---------- TCTAAAAGCA ACTTTATGAG ----GCCGA- CAGAATTCCT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- TCTGAAAGCA ACTTTATGAG ----ACAGA- CAGGACTCCT shrew ---------- TCTAAATGTT ACTTTATGAG ----GCAGA- CAGGATCCCT rfbat aaaattataa ---------A ACTTCATGAG ----GCAGA- CAGGATTCCT cpbat aaaatcataa TTTAACCATA ACTTTATGAG ----GCAAA- TAGGATTCCT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- TCTAAAAGCA ACTTT--GAG ----GCAGA- CAAGATTCCT ferret ---------- TCTAAAAGCA ACTTTT-GAG ----GCAGA- CAGAATTCCT dog ---------- TCTACAAGCA ACTTTTAGAG ----GCAGA- CAAGATTCCT pig ---------- TCTAAAAGCA ATTTTATGAG ----GCAGA- CAGAATTCCT muntjak_indian ---------- TATGAAAGCA ATTTTATAAG ----GCAGA- AAGGATTCCT sheep ---------- TCTAAAAGCA ACTTTATAAG ----GCAGA- AAGGATTCCT cow ---------- TCTAAAAACA ACTTTATAAG ----GCAGA- CAGGATTCCT horse ---------- TCTAAAAGCA ACTTTATGAG ----ACAGA- CAGGATTCCT armadillo ---------- TCTAAAAGCA ACTT--CGAG ----TCAGA- CAGATTTCCT elephant ---------- TCTAAAAGCA ACTTTATAAG ----GCAGA- TAGAATCCCT tenrec ---------- TCTAAGTCCA ACTTTATGAG ----GCAGA- CAGG-TTCCT wallaby ---------- ATTCAAAGCA ACTTTGTGAG ----ATTGAC CAAGATTCCT monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ATGAAAACCA ACTTTGTAAG ACTAACTGAT CAAGAATCCT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- TGCAAAAGCA CGTCCCAGTA ----CCAGT- TGGGATTACT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT chimp TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT gorilla TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT orangutan TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGCAGGGA GTACAAATAT gibbon TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT colobus_monkey TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT vervet TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT baboon ---------- ---------- ---------- ---------- ---------- macaque TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT dusky_titi TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT owl_monkey TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT squirrel_monkey TTGGGAC--- ---ATCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT marmoset TTGGGAC--- ---TTCACAT TAAGCTATTT TCAGTATGGA GTACAAATAT galago TTGGGGC--- ---TTC-TAT TAAGCTATTT TCAGTAGGGA GTACAAATAT mouse_lemur TTAGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT lemur TTAGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT rabbit TTGGGAA--- ---CTCATAT TAAGCTATTT TCAGAAGGGA GTAAAAATAT st_squirrel TTGGGAA--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT guinea_pig TTGGGAC--- ---TTCATAT CAAGCTATTT TCAGTAGGGA GCACAAATAT rat TTGGGAC--- ---TTGATAT TAAACTATTT TCAGTAGGGA G--CAAATAT mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAATAT shrew TTGGGAC--- ---TTCAAAT CAAGCTATTT TCAGTAGAGA GTACAAATAT rfbat CTGGGACCTC ATGTTCATGT TAAGCTATTT TCAGCAAGGA GCACAAATAT cpbat TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTAGGGA GTACAAACAT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TTGGGAC--- ---TTCATAT CAAGCTATTT TCAGTTAGGA GTACAAATAT ferret TTGGGAC--- ---TTCATAT CAAGCTATTT TCAGTAAGGA GTACAAATAC dog TTGGGAC--- ---TTCATAT CAAGCTATTT TCAGTAAGGA GTACAAATAT pig TTGGGAC--- ---TTCACAT TAAGCTCTTC TCAGTAGGGA ATACAAATAT muntjak_indian TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTA-GGA GTACAAATAT sheep TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTA-GGA GTACAAATAT cow TTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTA-GGA GTACAAATAT horse TTGGGAC--- ---TTCATAG TAAGCTATTT TCAGTAGGGA GTACAAATAT armadillo CTGGGAC--- ---TTCATAT TAAGCTATTT TCAGTTGTAA GTACAAATAC elephant TCGGGAC--- ---TTCATAT TAGACTATTT TCAGTTGGGA GTACAAATAT tenrec GTGGGAC--- ---CTCATAT TAGGCTATTT TCAGTTGGGA GCACAAATAT wallaby TTAGGAC--- ---TTCATAT TAATA----A CCAG------ -----ATAAT monodelphis ---------- ---------- ---------- ---------- ---------- opossum CCAGGAC--- ---TTTATAT TAAGATATTT CCAT------ -----ATAAT platypus ---------- ---------- ---------- ---------- ---------- chicken CAATGGA--- ---CTAAAAT GTACAACTGA GCAATGCAGA GAACACATCT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTGTT--GA AAATGCTAAG AAA---CGCC TTTAAAACAT TTCCTAATAG chimp TTTGTT--GA AAATGCTAAG AAA---CGCC TTTAAAACAT TTCCTAATAG gorilla TTTGTT--GA AAATGCTAAG AAA---CGCC TTTAAAACAT TTCCTAATAG orangutan TTTGTT--GA AAATGCCAAG AAA---CGCC TTTAAAACAT TTCCTAATAG gibbon TTTGTT--GA AAATGCTAAG AAA---CGCC TTTAAAACAT TTCCTAATAG colobus_monkey TTTGTT--GA AAATGCTAAG AAA---CGCC TTTAAAACAT TTCCTAATAG vervet TTTGTT--GA AAATGCTAAG AAA---CTCC TTTAAAACAT TTCCTAATAG baboon ---------- ---------- ---------- ---------- ---------- macaque TTTGTT--GA AAATGCTAAG AAA---CTCC TTTAAAACAT TTCCTAATAG dusky_titi TTTGTT--GA AAATGCTAAG AAA---TGCC TTT-AAACAT TTCCTAATAA owl_monkey TTTGTT--GA AAATGCTAAG AAA---CGCC TTTAAAACAT TTCCTAATAG squirrel_monkey TTTTTTTTGA AAATGCTAAG AAA---CGCC TTTAAAACAT TTCCTAATAG marmoset TTTGTT--GA AAATGCTAAG AAA---CGCC TTTAAAACAT TTCCTAATAG galago TTTGTT--CA AAATGCTAAG AAA---CGCC TTTAAAACAT CTCCTAATAG mouse_lemur TTTCTT--CA AAATGCTAAG AAA---CGCC TTTAAAACAT CTCCTAATAG lemur TTTGTT--CA AAATGCTAAG AAA---CGCC TTTAAAACAT CTCCTAATAG rabbit TTTGGT--CA AAATGCTAAG AAA---CGCC TTTAAAACAT CTCCTAATAT st_squirrel TTTGTT--CA AAATGCTAAG AAA---CGCC TTTAAAACAT CTCCTAATAG guinea_pig TTTCTT--CA AAATGCTAAG AAA---CGCC TTTAAAACAT CTCCTAATAG rat TTTGTT--CA AAATACTAAG AAA---CGCT TTTGAAACAT CTCCTAATAG mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTTGTT--CA AAATGCTAAG --------TT GTTAAAACAT CTCCTAATAA shrew TTTGTT--AA AAATG-TAAG --------TT GTTAAAACAT CTCCTAATAA rfbat TTTGTT--CA AAATGCTAAG AAA---CGCC ATTAAAACAT CTCCTAATAG cpbat TTTGTT--TA AAATGCTAAG AAA---CACA GTTAAAACAT TTCCTAATAG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TTTGTT--CA AAATACTAAG AAA---CGCA GTTAAAACAT CTCCTAATAG ferret TTTGTT--CA AAATACTAAG ATA---CGAC ATTAAAACAT CTCCTAATAG dog TTTGTT--CA AAATACTAAG AAA---CGCC GTTAAAACAT CTCCTAATAG pig TTTGTT--CA AAATGCTAAG AAACGCCGCC GTTAAAACAT CTCCTAATAG muntjak_indian TTTGTT--CA AAATGCTAAG AAA---CGAC CTTAAAACAT CTCCTAATAG sheep TTTGTT--CA AAATGCTAAG AAA---CGCC CTTAAAACAT CTCCTAATAG cow TTTGTT--CA AAATGCTAAG AAA---CGCC CTTAAAACAT CTCCTAATAG horse TTTGTT--CA AAATGCTAAG AAA---CGTC GTTAAAACAT CTCCTAATAG armadillo TTTGTT--CA AAATGCTAAG AAC---AGAC TTTAAAACAT CTCCTAATAG elephant TTTGTT--CA AAATGCTAAG AAA---CACA TTTAAAACAT CTCCTAATAG tenrec TTTGTT--CA AAATGCTAAG AGA---CGCA TTTAAAACAT CTCCTAATAG wallaby TTGGTT--TA CTTTTTTTAA AAC------- ---AAACAAT CTCAG----- monodelphis ---------- ---------- ---------- ---------- ---------- opossum TTTGTT--TA AAACTTTAAA AAT------- ---AAACAAT CTCAGAAAAC platypus ---------- ---------- ---------- ---------- ---------- chicken TTGGCT--AA AGCTTTTAAG ATA---GGTT GTTA------ -TCATTATGG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GG-------T CAT-AGTGGC TTGTTGTAAA GAAC-AGAAA CCAATTTGCC chimp GG-------T CAT-AGTGGC CTGTTGTAAA GAAC-AGAAA CCAATTTGCC gorilla GG-------T CAT-AGTGGC TTGTGGTAAA GAAC-AGAAA CCAATTTGCC orangutan GG-------T CAC-AGTGGC CTGCTGTAAA GAAG-AGAAA CCAATTTGCC gibbon GG-------T CAT-AGTGGC TTGCTGTAAA GAAC-AGAAA CTAATTTGCC colobus_monkey GG-------T CAT-AGTGGC TTGCTGTAAA GAAC-AGAAA TCAATTTGCC vervet GG-------T CAT-AGTGGC TTGTTGTAAA GAAC-AGAAA TCAATTCGCC baboon ---------- ---------- ---------- ---------- ---------- macaque GG-------T CAT-AGTGGC TTGTTGTAAA GAAA-AGAAA TCAATTTGCC dusky_titi GG-------T CAC-TGTGGC TTGTTGTAAA GACC-AGAAA CCAATTTGCC owl_monkey GG-------T CAT-TGTGGC TTGTCGTAAA GACC-AGAAA CCAATTTGCC squirrel_monkey GG-------T CAT-TGTGGC TTAT---AAA GACC-AGAAA CCAATTTGCC marmoset GG-------T CAT-TGTGGC TTGTTGTAAA GACC-AGAAA CCAATTTGCC galago GG-------T CAT-AGTGGT CTGTTACAAA GACC-AGAAA CCAACTTGCC mouse_lemur GG-------T CATAAGTGGC CTGGTGTAAA GAAC-GGAAA CCAATTTGCC lemur GG-------T TATAAGTGGC CTGTTGTAAA GAAC-AGAAA CCAATTTGCC rabbit GG-------T CATAAGTGGT CTGTTGAAAA AAGC-AGAAA GCAAATTGCC st_squirrel GG-------T CATACATGGC CTGTTGAAAA GAAA-AGAAA CCCTATTGCT guinea_pig GG-------T CATACATGGT CTGTTGAAAA GAAC-AGAAA CCATTTTGCC rat GG-------T CATACATGGC CTATTGAAAA CCAC-AGAAG TCAGTTTGCC mouse ---------- ---------- ---------- ---------- ---------- hedgehog GG-------T TATAAATGGT TTGTTGA--- -AAC-AGAAA CCAATTTGTT shrew GG-------T CATAAATGTT TTCTTAA--- -AAT-ATAAA CTAATTTGTC rfbat GG-------T CATGAATGGC CTGTTAAAAC GAAC-AGAAA CCAATTTGCT cpbat GG-------T CATGAA---- --------AT GAAC-AAAAA CCAATTTGTC cat ---------- ---------- ---------- ---------- ---------- clouded_leopard GG-------T TATAAAAGG- CTGTTGAAAA GAAC-AGAAA TGAATTTTCC ferret GG-------T CATAAATGGC CTGTT----- GAGC-AGAAA CTAATTTTGC dog GG-------T CATAAACGGC CTGTCGGAAA GAAC-AGAAA TGAATTTTCC pig GG-------T CATGAATGGC ATGTTGAAAA GAAT-AGAAA CTAGTTTGCC muntjak_indian GG-------T CATAAATGGC CTGTTGAAAC AAAC-AGAAA CCAATTCGTC sheep GG-------T CATAAATGGC CTGTTGAAAT AAAC-AGAAA CCAATTTGTC cow GG-------T CATAAATGGC CTGCTGAAAC AAAC-ATAAA CCAATTTGTC horse GG-------T CATAAGTGGC TTGTTGAAAT GAAC-AGAAA CCAATTTGCC armadillo GG-------T CATAAATGGC CTGTTGAAAA GAAC-AGAAA CCAATTTGCC elephant GG-------T CATAAATGGC CTGTTGAAAA GAAC-AGAAA GCAATTTGCC tenrec GG-------T TATAAATGGC CTATTGAAAA GAAC-AGAAA CCAATTTGCC wallaby ---------T CATAAAGGGC ACCTTATAAA ATTCTGGCAA CCCACATGCT monodelphis ---------- ---------- ---------- ---------- ---------- opossum TA------CT TCTAAATAGT CCCCTGTAAA AGTTTAGCAA TCCATAATTT platypus ---------- ---------- ---------- ---------- ---------- chicken AAACAGCCAT CATGCTCAGT GTTGTGTGAT CAGT-ATTAC CTAAGCTGAC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG chimp CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG gorilla CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG orangutan CC-A-Taaga gcagtaacag atggtcaAGA ATTTGTACCA CTATTTT-GG gibbon CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG colobus_monkey CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG vervet CC-A-T---- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG dusky_titi CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTC-GG owl_monkey CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG squirrel_monkey CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG marmoset CC-A-Taaga gcagtaacag atggtcaAGA ACTTGTACCA CTATTTT-GG galago CCTA-TAAGA GTAATAACAG ATGGTAAAGA ACTTATACCA CAATTTT--T mouse_lemur CCTA-Taaga gtagtaacag atggtcaAGA ACTTATACCA CTATTTT-GG lemur CCTA-Taaga gtagtaacag atggtcaGGA ACTTATACCA CTATTTT-GG rabbit CC-TATAAGA GCTCTAACAG ATGGTCAGGA ACTTATACCA CTCTTTT-GG st_squirrel CT-A-TAAAA GCACTAACAG ATGGTAAAGA ACTTATACCA CTATTTT-GG guinea_pig CC-T-Caaaa gtgctaacag atggtcaAGA ATTTGTACCA GTCCTTT-AG rat CC-T--aaaa gcactgacag atggtcGATA ACTTGCACT- GCTAGTT-GG mouse ---------- ---------- ---------- ---------- ---------- hedgehog CCTA-TTAAA GCTTTAACAG ATGGCCAACA GCTTATCCTG TTATTTT-GG shrew CATA-TAAAA GTTCTAACAG ATGGTCAACA ACTTACACAA CTATTTT-AG rfbat CCTC-Taaga acactcacag atggtcacca atttgtacCA CTATTTT-GG cpbat CTTC-Taaga acactgatag aggatcaACA ACTTATACCA TTATTTG-GG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CTTA-Taaga gcactaacag atggtcaACA ACTTATACCA CTATTTT-GG ferret TCTA-T---- ---------- ---------- ---------- ---------- dog CCTA-Caaga gcactaacag atggtcaACA ACTTATACCA CTATTTT-GG pig CATA-Aaaga atagtaacag gtggtcaACA ACTTATATCA CTGCTTT-GA muntjak_indian CCCA-Taaga acactaacag atggtcaACA ATTTATACCA CTCTTTT-GG sheep CTTA-Taaga acactaacag gtggtcaACA GTTTACACCA CTCTTTT-GG cow CCTA-Taaga acactaacag gtggtcaACA ATTTACACCA CTCTTAT-GG horse CCTA-Tcaga gtactaacag atggttaACA ATTTATATCA CTATTTT-GT armadillo CCTA-Taaaa gcactaacaa atggtcaaca agTTACACCA CTATTTT-GT elephant CCTA-TAAGA GCACTAACAG ATGGTCAA-- --------CC CTATTTT-GG tenrec TCCA-TACCA CCGCTAACAG ATGGTCAAAA GCTTATACCA CAATTTTCGT wallaby ACCG-TGAAA TAATAAGTAG A-----AAGA GCTTATACTA CTGCTTT-GT monodelphis ---------- ---------- ---------- ---------- ---------- opossum ACTA-TAGAA GAATAAGCAG AG---TATAA ATCCATATTA TTGTTTC-GG platypus ---------- ---------- ---------- ---------- ---------- chicken GTGA-C---- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -TTTTTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AACTT chimp -TTTTTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AACTT gorilla -TTTTTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AACTT orangutan -TTTTTC--- -------TTA TTAAGATGGC TAGATTTCAG -----AACTT gibbon -TTTTTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AACTT colobus_monkey -TTTTTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AACTT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque -TTTTTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AACTT dusky_titi -TTTCTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AACTT owl_monkey -TTTCTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AACTT squirrel_monkey -TTTCTC--- -------GTA TTAAAGTGGC TAGATTTCAG -----AACTT marmoset -TTTCTC--- -------TTA TTAAAATGGC TAGATTTCAG -----AGCTT galago -TTT------ --------TA TTAAAATGGC TACATTTCAG -----AACTT mouse_lemur -TCT------ --------TA TTAAAACGGC TAAATTTCAG -----AACTT lemur -TTTTTC--- -------ATA TTAAAACAGC TAAATTTCAG -----AACTT rabbit -TTTCTC--- -------TTA TTAAAACAGC TAGATTTCAG A----AATTT st_squirrel -ATTTTC--- -------TTA TTAAAATGGC TAGCTTTCAG AATCTAGCTT guinea_pig -ATTTTC--- -------TTA TTAAAATGGC TAGATTTCAG AATCCAGCTT rat -ATTTTC--- -------TTA TTAAAATGGC TAGATTTCAG AATCTAGCTT mouse ---------- ---------- ---------- ---------- ---------- hedgehog -TTTTTC--- -------TTA TTGAAGTTTT CTTATT-CAG A----AACTT shrew -TTTTTC--- -------TTA TTAAAACAGC TAGATTTCAG A----AACTT rfbat -CTTTTC--- -------TTA TTACAACAGC TAGATTTCAA A----AACTT cpbat -CTTTTC--- -------TCA TTAAAACAGC TAGATTTCAT T----AACTT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard -TTTTTC--- -------TTA CTAAAACAGC TAGATTTCAG A----AATTT ferret ---------- ---------- ---------- ---------- ---------- dog -GTTTTC--- -------TTA CTAAAACAGC TAGATTTCAG A----AATTT pig -Cttttaaaa aaaaaaatta --aaaCTAGC TAGATTTCAG A----AACCT muntjak_indian -CCTT----- -------TTA --AAAACAGC TAGATTTCAG A----AACTT sheep -CCTT----- -------TTA --AATACAGG TAGGTTTCAG A----AACTT cow -CCTT----- -------TTA --AAAACAGC TAGGTTTCAG A----AACTA horse -TTTTCTC-- -------TTA TTAAAACAGC TAGATTTCAG A----AACTT armadillo -TTTTGC--- -------TTA TCAAAATAGC TAGATTTCAG G----AACTT elephant -TTTTTC--- -------TTA TTAAATCGGC TAGATTTCAG A----AACTT tenrec -TTTTTC--- -------CTG TTAAATCAGC TTGACTTCAC A----AACTT wallaby GTTTTAT--- -------CCA ACAAAAAA-T CAACTA---- -----AACTT monodelphis -TTTTAC--- -------CCA ATAAAAAAAT CAACTA---- -----AACTT opossum GTTTTTC--- -------TCC ATAAAAAAGT CAGTTA---- -----ATATT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC chimp CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC gorilla CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC orangutan CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC gibbon CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC colobus_monkey CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC dusky_titi CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC owl_monkey CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC squirrel_monkey CTTGGC-AAG CTTC------ ---------- ---------T ATTCAAATGC marmoset CTTGGC-AAG CTGC------ ---------- ---------T ATTCAAATGC galago CTTGGCAAAG CCGC------ ---------- ---------T ATTCAACTGC mouse_lemur CTTGGC-AAG CTGC------ ---------- ---------T ACTCAACTGC lemur CTTGGC-AAG CTGC------ ---------- ---------T ACTCAACTGC rabbit CTTGGC-ACA CTGC------ ---------- ---------T GTTCAACTGC st_squirrel CCTGCC-AAG CTGC------ ---------- ---------T TTTCAACTGC guinea_pig ACTGGC-AAG CTGC------ ---------- ---------T TTTCAACTGC rat CTTGGC-AAG GTGC------ ---------- ---------T TTTCAAC--- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTTGGC-AAG ATAC------ ---------- ---------C ATTTAATTGC shrew CTTGGC-CAT TTGC------ ---------- ---------T ATTCAACTGC rfbat CTTGGC-AAG CTGT------ ---------- ---------T ATTCAACTGC cpbat CTTGGC-AAG CTGA------ ---------- ---------T ATTCAACTGT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TTGG------ ---------- ---------- ---------- ---CAACTGC ferret ---------- ---------- ---------- ---------- ---------- dog CTTGGC-AAG CTGC------ ---------- ---------T ATTCAACTGC pig CTTGGC-AAG CTGC------ ---------- ---------T ATTCAGCTGT muntjak_indian CTTGGC-AAA CTGC------ ---------- ---------T AGTCAACAGC sheep CTTGGC-AAA CTGC------ ---------- ---------T AGTCAACTGC cow CTTGGC-AAA CTGC------ ---------- ---------T AGTCAACTGC horse CTTGGC-AAG CTGC------ ---------- ---------T GTTCAACTAC armadillo CTTAGC-ACA CTGC------ ---------- ---------T ATTCAACTGC elephant CTTGGC-AAG CTGC------ ---------- ---------T AGTTAACTGC tenrec CTTGGC-AAG CTGC------ ---------- ---------T ATTTAACTGC wallaby TTTTAG-AAA TTATGTACAA AATAAAGTAC AAAACCCAGT ATTCAGCCAT monodelphis TTTAAG-AAA TTAT------ ---------- ---------T AT-------- opossum CTTAAC-AAA CTAA------ ---------- ---------T ATTCAGACAT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaat chimp AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaat gorilla AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaat orangutan AGAAATGCAT CTGCCTAG-A AACTCAAAAA TAAACATGTT Tttttggaat gibbon AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaat colobus_monkey AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAGCATGTT Tttttggaat vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaat dusky_titi AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaat owl_monkey AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaag squirrel_monkey AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaag marmoset AGAAATGCAT CTGCTTAG-A AACTCAAAAA TAAACATGTT Tttttggaat galago AGAAATGCAT CTGCTCAG-A AACTCAAAAA TAAACATGTT T----GAATT mouse_lemur -AAAATGCAT CTGCTCAG-A AACTCAAAAA TAAACATATT T----ggact lemur AAAAATGCAT CTGCTCAG-A AACTCAAAAA TAAACATATT T----ggact rabbit AAAAATATAT CTGCTCAG-A AGCCCCAAAA TAAACATGCT T--------- st_squirrel AGAAATGCAT CTGCTCAG-A AACCCAAAAA TAAACTTGCT Tttttggatt guinea_pig AGAAATGCAT CTGCTCAG-A AACCCAAAAA TAAACATGCT T--------- rat ------GCAT CTGCTC---A AACCCCAAAA TAAACATGCT TTTTTAGATT mouse ---------- ---------- ---------- ---------- ---------- hedgehog AGGAATGCAT GAGCTTAG-A AACCCTGAAA TAAATGTGTG T--------- shrew AGAAATGCCT CAGTTTAG-T AATCCCAAAA TAAACATGTT T---TGGGGA rfbat AGAAAGGCAT CTGCTCAG-A AACCCCAAAA TCATCATGTT Tttttatatt cpbat AGAAAAATAT CTGCTCAG-A AACATAAAAA TAAGCATGTT Tttttgtatt cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AGAAATGCAT CTGCTCAG-A AACCCAAAAA TAAACATGTT T--------- ferret ---------- ---------- ---------- ---------- ---------- dog AGAAATGCAT CTGCTCAG-A AACCCAAAAA TAAACATGTT T--------- pig AGAAATGCAT CTACTCAG-A AACCCCAAAA TAAACA--TT T--------- muntjak_indian AGAAATATAT CTGCTTAG-A AACCCCAAAA TAAACATGTT T--------- sheep AGAAATGTAC CTGCTCAG-A AACCCCAAAA TAAACATGTT T--------- cow AGAAATGTAT CTGCTCAG-A AACCCCAAAA TAAACATGTT T--------- horse AGAAATGCAT CTGCTCAG-A AATCCAAAAA TAAACG--TT T--------- armadillo AGAAATGCAT CTGTTCAG-A AACCCTCAAA TAAATGTGTT Tttttggatt elephant AGAAATGCAT CTGCTCAG-A AACCCTAAAA TAAACATGTT Tttttggatt tenrec AGAAATGCAT CTGTTCAG-A AACCCCAAAA TAAACACAGT Tttttggatt wallaby AAACATTCAT GTTCTTAGTA AATTCTAATT TAGAAATATT Tcattggacc monodelphis ---------- ---------- ---------- ---------- ---------- opossum AAACATTCAA GTTTTTAGTA AAATCTAATT TAGAAATGAT Ccatcagact platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human tcaaatgggt cttacaaaac ttttggataa ttcaagtgta aactaatcag chimp tcaaatgggt cttacaaaac ttttggataa ttcaagtgta aactaatcag gorilla tcaaatgggt cttacaaaac ttttggataa ttcaagtgta aactaatcag orangutan tcaaatgggt cttacaaaac ttttggataa ttcaagtgta aactaatcag gibbon tcaaatgagt cttacaaaac ttttggataa ttcaagtgta aattaatcag colobus_monkey tcaaatgggt cttacaaaac ttttggataa ttcaagtgta aactaatcag vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque tcaaatgggt cttacaaaac ttttggataa ttcaagtgta aactaatcag dusky_titi tcaaatggtt cttacaaaac ttttggataa ttcaagtgca aactaatcag owl_monkey tcaaatggtt cttacaaaac ttttggataa ttcaagtgca aactaatcag squirrel_monkey tcaaatgatt cttacaaaac ttttggataa ttcaagtgca aactaatcag marmoset tcaaatggtt cttacgaaac ttctggataa ttcaagtgca aactaatcag galago tcaaatggtt cttacaaaac ttttggataa ttcaagtgca aactaaccag mouse_lemur ttaaatg-tt cttacaaaac tt------aa ttcaagtgca aactaaccag lemur ttaaatggtt cttacaaaac ttctggataa ttcaagtgca aactaaccag rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ccaaatattt tttacaaaat ttttggataa tt-aaatgaa aactaaccag guinea_pig ---------- ---------- ---------- ---------- ---------- rat TT-CATGGTT CTTGCAAAAC TTTTGGATAT TTCAAGTGCA AGCTAACTGG mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew GGAAATGGTC GAGACAAAA- ---------- ---------- --TTAATAAG rfbat tcaaatggtt cttacaaaac ttttggataa ttcaagtgca agctaatcag cpbat tcaaatggtc cttaaaaaac tttttggtaa ttcaagtgca aactaatcag cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo tcagatggtt ctttcaaaac ttttggataa tccaagtgtg aactaatgag elephant tcagatgatt cttacaaaaa ttttggataa tttaagggca aactaatcag tenrec tcatatggtt cttacaaaac ttttggaaaa ttgaagggca aactaatcag wallaby tcaaataact cttacaaaac ttttggatga attaagtaca aaataatgag monodelphis ---------- ---------- ---------- ---------- ---------- opossum tcaaaaagct cttacaaaac ttttgggtga attaagtgca aagtaat--- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human aaacacat-- ---gggattg aattcccttt gaga-tttac aatc-agggt chimp aaacacat-- ---gggattg aattcccttt gaga-tttac aatc-agggt gorilla aaacacat-- ---gggattg aattcccttt gaga-tttac aatc-agggt orangutan aaacacat-- ---gggattg gattcccttt gaga-tttac aatc-agggt gibbon aaacacat-- ---gggattg aattcccttt gaga-tttac aatc-agggt colobus_monkey aaacacat-- ---gggattg aattcccttt gaga-tttac aatc-agggt vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque aaacacat-- ---gggattg aattcccttt gaga-tttac aatc-agggt dusky_titi aaacatgt-- ---ggaactg aattcccttt gaga-tttac aatc-agggt owl_monkey aaacacgt-- ---ggaactg aattcccttt gaga-tttac aatc-agggt squirrel_monkey aaacacgt-- ---ggaactg aattcccttt gaga-tttac aatc-agggt marmoset aaacacgt-- ---ggaactg aattcccttt gaga-tttac aatc-agggt galago aaacacat-- ---gggattg aattcccttt gaGA-ATTAT AATG-AGGGT mouse_lemur aaacacat-- ---gggattg aattcccttt gaga-attac aatc-agggt lemur aaacacat-- ---gggattg gattcccttt gaga-attac aatc-agggt rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel aaacacat-- ---ggaattg aattcccttt gagattttat aatc-agggt guinea_pig ---------- ---------- ---------- ---------- ---------- rat AAACACAT-- ---GGGGTTG ACTTCTGTTT AAGA-TTTAT AGTC-AGGGT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew AAGCACATTC AAATGGATTG AATTCCTTTT GAAA-CGTGC AGTC-TGAAA rfbat aaacacat-- ---gggactg aattcccttt gaga-tttat aatc-agggt cpbat aagcacat-- ---gtgactt aattcccttt gaga-tttac aatc-agggt cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo aaacacat-- ---gggattg aattcccttt gaga-t-TAC TATC-AGGGT elephant aaacacat-- ---gggattg aattccctct gaga-tatat aatc-agggt tenrec aaacacat-- ---gggattg aattccctct gagg-tttac aatc-agggt wallaby gaacacat-- ---ggg-ttg aatttccctt gaga-tttaa aatctagggg monodelphis ---------- ---------- ---------- ---------- ---------- opossum gaatacat-- ---gga-ttg aatttccctt tagg-ttcaa aatctaggtg platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human gaaa------ --ggacttgg caaactAAAT CAGCAGGATT TGGTAGCTGC chimp gaaa------ --ggacttgg caaactAAAT CAGCAGGATT TGGTAGCTGC gorilla gaaa------ --ggacttgg caaactAAAT CAGCAGGATT TGGTAGCTGC orangutan gaaa------ --ggacttgg caaactAAAT CAGCAGGATT TGGTAGCTGC gibbon gaaa------ --ggacttgg caaactAAAT CAGCAGGATT TGGTAGCTGC colobus_monkey gaaa------ --ggacttgg caaaCTAAAT CAGCAGGATT TGGTAGCTGC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque gaaa------ --ggacttgg caaaCTAAAT CAGCAGGATT TGGTAGCTGC dusky_titi gaaa------ --ggacttgg caaactAAAT CAGCAGGATT TGGTAGCTGC owl_monkey gaaa------ --ggacttgg caaactaaat cagcaggatt tggtagttgc squirrel_monkey gaaa------ --ggacttgg caaactAAAT CAGCAGGATT TGGTAGCTAC marmoset gaaa------ --ggactggg caaactAAAT CAGCAGGATT TGGTAGCTGC galago GAAAGGATTT GGGGATTTGG CAAACTGAAT CAGTAGAAAT GGGTAGCTGC mouse_lemur gaaa------ --ggacttgg caaactaaat cagcagaatt gggtagctgc lemur gaaa------ --ggacttgg caaactAAAT CAGCAGAATT GGGTAGCTGC rabbit ---------- ---------- ------AAAT CAGCAGGATT CAGGAGCTGC st_squirrel taaa------ --ggacatgg caaactAAAT TGGCAGGATG CAGTAACCAC guinea_pig ---------- ---------- ---------- ---------- ---------- rat GAAA------ --GGGCATGG CAAACTAAAA T-GCAGGATT TGGTAACTGC mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ------AAAT CAGCAGTATT TGACAGTTGC shrew GATA------ --TACATTGG AAAGGTAGAT CAGCAGGATT CTGCAGTTGC rfbat gaaa------ --gggcttgg caaactAATT CAGCAGGATT TGGTAGCTGC cpbat gaaa------ --ggacttgg caaGTCAAAT CAGCAGGATT TGGTAGCTGT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ------AAAT CAGCAGGATT TGGTAGCTGC ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ------AAAT CAGCAGGATT TTGTAGCTGC pig ---------- ---------- ------AAA- CAGCAGGATT TGGTATCTGC muntjak_indian ---------- ---------- ------AAAT CAGCAGGATT TGGTAGCTGC sheep ---------- ---------- ------aaat CAGCAGGATT TGGTAGCTGT cow ---------- ---------- ------AAAT CATCAGGATT TGGTAGCTGC horse ---------- ---------- ------AAAT CAGCAGGATT TGGTAGCTGC armadillo AAAA------ --GTACTTGA CAAACTAAAT CAGCAGGATT TGGTAGTTGC elephant gaaa------ --ggacctgg caaactaaat cagcaggatt tagtagctgc tenrec gaaa------ --ggacttgg aaaaa-AAAT CAGCAGGATT TAGCTGCTGC wallaby gaaa------ --atgctgga gaagct---- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum gaaa------ --gttctgga gatact---- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTGACTTTGG GAATCAAAGA TGAATTAATT AGGGTTAAAT TTATTCCTTA chimp TTGACTTTGG GAATCAAAGA TGAATTAATT AGGGTTAAAT TTATTCCTTA gorilla TTGACTTTGG GAATCAAAGA TGAATTAATT AGGGTTAAAT TTATTCCTTA orangutan TTGACTTTGG GAATCAAAGA TGAATTAA-- ----TTAAAT TTATTCCTTA gibbon TTGACTTTGG GAATCAAAGA TGAATTAATT AGAGTTAAAT TTACTCCTTA colobus_monkey TTGACTTTGG CAATCAAAGA TGAATTAA-- ----TTAAAT TTATTCCTTA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TTGACTTTGG GAATCAAAGA TGAATTAATT AGAGTTAAAT TTATTCCTTA dusky_titi TTAACTTTGG GAATCAAAGA TGAATTAATT AGAGTTAAAT TTATTCCTTA owl_monkey ttgactttag gAATCAAAGA TGAATTAATT ACAGTTAAAT TTATTCCTTA squirrel_monkey TTGACTTTGG GAATCAAAGA TGAATTAATT AGAGTTAAAT TTATTCCTTA marmoset TTGACTTTGG GAATCAAAGA TGAATT---- ---------T TTATTCCTTA galago TTGATTTTGG AAATTGAGGA TGAATTAATT -GAGTTAAAT TTAGTCTTTA mouse_lemur ttgactttgg gAATCAAAGA TGAATTAACT -GAGTTAAAT TTATTTCTAA lemur TTGACTTTGG GAATCAAAGA TGAATTAATC -GAGTTAAAT TGATTCCTTA rabbit CTGGCTTTGG GAATCAAGGA TGAATT---- ---------T TTATCTCTTA st_squirrel TTAATTTTGG GAATCAACAA TGAATTAATT -GAATTAAAT TTTTCTCTTA guinea_pig ---------- ---------- ---------- ---------T TAATCTTTTA rat ------TTGG GAAATGATAA TGAATTaatt -gaattaaaT TTATCTCTTA mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTCACTTTAG AAATCATAGA ---------- ---------A TCATACCCTC shrew -TAACTTGAG AACT------ ------AATT TGAATTAAAT TTATCCTTTT rfbat TTGACTTTGG GAATCAAAGA TGAATT---- ---------T TTATTCTTTA cpbat TTGACTTTAG AA--CCAAAA TAAATT---- ---------T TTATTCCTTA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TTGACTTTGG AAATCAAAGG TGAATT---- ---------T TTAGCCCTTA ferret ---------- ---------- ---------- ---------- ---------- dog TTGGCTTTGG AAATCAAAGA TGAATT---- ---------T TTATCCCTTA pig TTGACTTTGG GAATCAAAAA TGAATA---- ---------T TTATTCCTTA muntjak_indian TTGACTTTGG GAATCAAAGG TG-ATT---- ---------T TTATTCTTTA sheep TTGACTTTGG GAATCAACGG TGAATT---- ---------T TTATTCCTTA cow TTGACTTTGG GAATCTAAGG TGAATT---- ---------T TTATTCCTTA horse TTGACTTTGG GAATCAAAGA TAAATT---- ---------T TTATTCCTTA armadillo TTGGATTTGG AAATCAAAGA TGAATTAATT TTAATTCAAT TTATCCATCA elephant ttggattggg gactcaaaga tTAATTAATT TTAATTAAAT TTATCCTTTA tenrec TTGGTTTTGA GACTCAACAA TTAACTAATT TGATTTCAAT TTATCCTTTC wallaby ---------- ---------- ----TT---- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTTCTCCAAA AA-------- chimp AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTTCTCCAAA AA-------- gorilla AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTTCTCCAAA AA-------- orangutan AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTTCTCCAAA AA-------- gibbon AAGCCAAAGA T-AAAA---- --T-AATTTT CTTCTCCAAA AA-------- colobus_monkey AAGCCAAAGA T-AAAA---- --T-AATTTT CTTCTCCAAA AA-------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTTCTCCAAA AA-------- dusky_titi AAGACAAAGA T-AAAATAA- TTT-AATTTT CTTTTCCAAA AA-------- owl_monkey AAGATGAAGA T-AAAA---- --T-AATTTT CTTTTCCAAA AA-------- squirrel_monkey AAGACAAAGA T-AAAATAA- TTT-AATTTT CTTTTCCAAA AA-------- marmoset AAGACAAAGA T-AAAATAA- TTT-AATTTT CTTTTCCAAA AA-------- galago AAGCCATAGA T-AAAATAA- TTT-CATTTT CTTTTCTCAA AA-------- mouse_lemur AAGGCATAGA T-AAAATAA- TTT-AATTTT CTTCTCTGAA AA-------- lemur AAGCCATAGA T-AAAATAA- TTT-AATTTT CTTCTCTGAA AA-------- rabbit -AGCCAAAGA T-AAAATAA- TTT-AATCT- --TCTCTAAA AA-------- st_squirrel GAGACAAGCA T-AAAATAA- TTT-ATTTT- ----TCTGAA AA-------- guinea_pig GAAGCAAAGA T-AAAGTAG- TTT-aatttg cttttctgaa aa-------- rat GAGCCAAAGA TAAAAGAAA- TTT-ATTTTG CTTCTCCATA AA-------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog AAACCAAAGA T-ATAATAA- CTTCAATTTT CTTATCTGAA AA-------- shrew GAGTCAAAGA T-AAAGTAA- TTT-AGTTTT CTTATCTGAA AC-------- rfbat AAGAGAAAGA T-AAAATAA- CTT-ACTTTT CTTATCTGAA GA-------- cpbat GAGCCAAAGA T-AAAATAA- TTT-AATTTT CTTACCTTAA AA-------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AAGCCAAGGA T-AAAATAT- TTT-AATTTT CTTATCTGAA AA-------- ferret ---------- ---------- ---------- ---------- ---------- dog AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTTATCTGAA AA-------- pig AAGCCAAAGA T-AAAATAG- TTT-AATTTC CTTATCTGAA AA-------- muntjak_indian AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTAATCTGAA AA-------- sheep AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTAATCTGAA AA-------- cow AAGCCAAAGA T-AAAATAA- TTT-AATTTT CTAATCTGAA AA-------- horse AAGCTGAAGA A-AAAATAA- TTT-AATTTT CTTATCTGAA AA-------- armadillo AAGTCAGAGA T-AAAAAAGT TTT-AACTTT CTTATCTAGA AA-------- elephant AAGCCAAAGA T-AAAATTA- TTT-AATTTT CTTATCTGAA AG-------- tenrec AAGCCAAAGA T-AAAATAA- TTT-CGTTTT CTTATCTGGA AA-------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- -----ctctc tctctctctc tctctctctc platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human A-CTTCATAG -----CACAG AAATTGGCAG CCTCTCAGCC AAATATCTCT chimp A-CTTCATAG -----CACAG AAATTGGCAG CCTCTCAGCC AAATATCTCT gorilla A-CTTCATAG -----CACAG AAATTGGCAG CCTCTCAGCC AAATATCTCT orangutan A-CTTCATAG -----CACAG AAATTGGCAG CCTCTCAGCC AAATATCTCT gibbon A-CTTCATAG -----CACAG AAATTGGCAG CCTCTCAGCC AAATATCTCT colobus_monkey A-CTTCATAG -----CACAT AAATTGGCAG CCTCTCAGCC AAATATCTCT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque A-CTTCATAG -----CACAT AAATTGGCAG CCTCTCAGCC AAATATCTCT dusky_titi C-CTTCATAG -----CATAT AAATTGGCAG CCTCTCAGCC AAATATCTCT owl_monkey A-CTTCATAG -----CACAT AAATTGACAG CCTCTCAGCC AAATATCTCT squirrel_monkey AACTTCATAG -----CACAT AATTTGGCAG GCTCTCAGCC AAATATCTTT marmoset A-CTTCATAG -----CACAT AAATTGGCAG CCTCTCAGCC AAATATCTCT galago A-CTTCACAG -----TACGT AAATTGGCAG CCTCAACATC AAATGTCTTT mouse_lemur A-CTTCATAG -----CACAT AAATTGGCAG TCTCTCAACC AAATATCTCT lemur G-CTTCATAG -----CACAT AAATTGGCAG TCTCTCAACC AACTATCTCT rabbit G-CTGCTTTG -----CACAT AAATTGGCAG CCTCTCAGCC AACTCTGTTT st_squirrel G-CTTCATAG AAA--AACAT AAATTGGCAG TCTCTCGGCC AACTATCTCT guinea_pig g-tttcatag -----aacat aaattggcag actttcaacc ccctctttct rat G-CTTCAAAG -----CACAT AAATTTTCAG CC--CCAGTC AAGCTTCTCT mouse ---------- ---------- ---------- ---------- ---------- hedgehog G-CTTCATAA -----CTCAG AAACTGGCAA TCCTTCAGCC AAATATCTCT shrew --CTTCATAA -----CACGT AAATTGGCAG TCTCTCAGC- AAATATCTCC rfbat G-CTTTATAG -----CACAC AAATTGGCAG CCTTTCAGCC AAATATTTCT cpbat G-CTTCATAG -----CACAT AAATTGTCAG CCTATTGGCC AAATATCTGT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard G-AGTCACAG -----CACAT AAATTGGCAG CCTCTCAGCC AAATATCTCT ferret ---------- ---------- ---------- ---------- ---------- dog G-CGTCATAG -----CACAT AAATTGGCTG CCTCTCAGCC AAATATCTCT pig G-CTTCATAG CTTTTCACAT GAATTGGCAG CTTCTCTGTC AAATATCTCT muntjak_indian G-CTCCATAG -----CACAT AAATAGGCAG CCTCTCAGCC -AACATCTCT sheep T-CTCCATAG -----CACAT AAATAGGCAG CCTCTCAGCC -AACATCTCT cow G-CTCCATAG -----CACAT AAATAGGCAG CCTCTCAGCC -AACATCTCT horse G-CTTCCTAG -----CACAT AAATTGGCAG CTTCTCAGCC AAACATCTCT armadillo A-TTTCAGAG -----AACAT ATATTGGCAG TCTCTCAGCC AAATACCTCT elephant G-CTTCAGAG -----GACAT AAATTGGCAG CCTCTCAGCC AAATATCTCT tenrec G-CTTCAGAG -----GACAT AAACTGGCAG CCTCTCAGAC AAATATCTTT wallaby t-atttgtta -----aaaaa aaaaa----- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum t-ctTTATca -----catac acacacacac acacacacac acacac---- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGGAATT--- --AAGAAATG AATG-AAAAG GTCTATATTA TTGACTATTA chimp TGGAATT--- --AAGAAATG AATG-AAAAG GTCTATA--A TTGACTATTA gorilla TGGAATT--- --AAGAAACG AATG-AAAAG GTCTATA--A TTGACTATTA orangutan TGGAATT--- --AAGAAATG AATG-AAAAG GTCTATA--A TTGACTATTA gibbon TGGAATT--- --AAGAAACA AATG-AAAAG GTCTATA--A T----TATTA colobus_monkey TGGAATT--- --AAGAAATG AATG-AAAAG GTCTATA--A TTGACTATTA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TGGAATT--- --AAGAAATG AATG-AAAAG GTCTATA--A TTGACTGTTA dusky_titi TGGAATT--- --AAAAAATG AATG-AAAAG TTCTATA--A TTGACTATTA owl_monkey TGGAATT--- --AAAAAATG ------AAAG TTCTATA--A TTGACTATTA squirrel_monkey TGGAATT--- --AAAAAACG AATG-AAAAG TTCTATA--A TCGACTATTA marmoset TGGAATT--- --AAAAAATG AATG-AAAAG TTCTATA--A TTGACTATTA galago TGCTA----- ------AATG AATGAAAAAG GTCTACA--C GTGATTA-TA mouse_lemur GGGAA----- ---------- ---------- ---------- ---------- lemur GGAAA----- ---------- ---------- ---------- ---------- rabbit TGGAA----- ---------- ---------- ---------- ---------- st_squirrel TGGAATT--- --AAAAAGTG AATT-AAAAA CTCCATT--A CTGATTCTAA guinea_pig tggAATT--- --TAAAAATG AATG-AAAAT GTCTATT--A TTGACTGTGA rat TGGAA----- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TGGAA----- ---------- ---------- ---------- ---------- shrew TGGAA----- ---------- ---------- ---------- ---------- rfbat TG-GA----- ---------- ---------- ---------- ---------- cpbat TGAGA----- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TGGAA----- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog TGGAA----- ---------- ---------- ---------- ---------- pig TGAAATTTTC CCAAAAAATG AATG-AAAAG TTCTATA--- ---------- muntjak_indian TGGAATTTTC C-AAAAAATA AATG-GAAAG GTCTTTA--- ---------- sheep TGGAATTTTC C-AAAAAATG AATG-GAAAG GTCTTCA--- ---------- cow TGGAATTTTC CAAAAAAATG AATG-GAAAG GTCTTTA--- ---------- horse TGGAATTTTT T--AAAAATG AATA-GAAAA GTCTATA--- -TGACTATAA armadillo TTGAATTTT- --AGAAAATG AATT-AAAAG GTCTATA--A TTGGCTATAA elephant TGGAA----- ---------- ---------- ---------- ---------- tenrec TGGAA----- ---------- ---------- ---------- ---------- wallaby -----T---- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATC-A----- ---------- ---CTTGGAA TCTCTGTTG- -TTAAACTGA chimp ATC-A----- ---------- ---CTTGGAA TCTCTGTTG- -TTAAACTGA gorilla ATC-A----- ---------- ---CTTGGAA --TCTGTTG- -TTAAACTGA orangutan ATC-A----- ---------- ---CTTGGAA TCTCTGTTG- -TTAAACTGA gibbon ATC-A----- ---------- ---CTTGGAA TCTCTGTTG- -TTAAACTGA colobus_monkey ATC-A----- ---------- ---CTTGGAA TCTCTGTGG- -TTAAACTGA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ATC-A----- ---------- ---CTTGGAA TCTCTGTTG- -TTAAACTGA dusky_titi AAC-A----- ---------- ---CTTAGAA TCTCTGTTG- -TTAAACTGA owl_monkey AAC-A----- ---------- ---CTTAGAA TCTCTGTTG- -TTAAACTGA squirrel_monkey AAC-A----- ---------- ---CTTACAA TCTCTGTTG- -TTAAACTGA marmoset AAC-A----- ---------- ---CTTAGAA TCTCTGTTG- -TTAAACTGA galago AAA-A----- ---------- ---CTTGGAA TCTTTGTCA- -TTAACCTAA mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ----t----- ---------- ---ctcaaac tccttct--- ---------- st_squirrel AAA-T----- ---------- ---CTTGGAC TCCGTCA--- ---------- guinea_pig AGA-A----- ---------- ---TCAAGAA TCTATCA--- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---CTGGGAA TGACTTCCTA ATAAATATGA cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse AAAAA----- ---------- ---CTTGGAA TTTCTGTCT- -TCAACCTGA armadillo AAA-ACCTTT TAAAGTAATG GAAATTGGAG TCTCTGTCA- -TTAACCTAA elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GAAGTAAACT GCATTGCCTA GAATATTGGC CA------TA TTTTT---AG chimp GAAGTAAACT GCATTGCCTA GAATATTGGC CA------TA TTTTT---AG gorilla GAAGTAAACT GCATTGCCTA GAATATTGGC CA------TA TTTTT---AG orangutan CAAGTAAACT GCATTGCCTA GAATATTGGC CA------TA TTTTT---AG gibbon CAAGTAAACT GCATTGCCTA GAATATTGGC CT------TA TTTTT---AG colobus_monkey CAAGTAAACT GCATTGCCTA GAATATTGGC CA------TA TTTTT---AG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CAAGTAAACT GCATTGCCTA GAATATTGGC CA------TA TTTTT---AG dusky_titi CAGGTAAACT GCATTGCCTA GAATATTGGC CA------TA -TTTT---AG owl_monkey CAGGTAAACT GCATTGCCTA GAATATTGGC CA------TA -TTTT---AG squirrel_monkey CAGGTAAACT GCATTGCCTA GAATATTGGC CA------TA -TTTT---AG marmoset CAGGTAAACT GCATTGCCTA GAATATTGGC CA------TA -TTTT---AG galago AAAGTAAACG G---TACCT- ---TATT--- ---------- -TTTT---AG mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ------acct gtattacctt aa-------- --------tt cttct-caaa st_squirrel ------AACT GTATTGCCTA GAATATAAGA CA------TA TTTTTATGAG guinea_pig ------AAAC TTACTGCTTT GAATATCAGC CATAGGTTTA GTTTT---AG rat ------AAAA TGATTGCCTA GAACAGCAGC CA------TA TTTGT---AG mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat TAAATAAACT GTATTGTTTA GGATATCAGC CA------AG TTTTT---AG cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse TAAGTAAACT GTATTGCCTA GAATATTAGC CA------AA TTTTT---AG armadillo CAAGTAAATT G-ATTGCCTA GAATATCAGT CA------AA GTTTT---AG elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGAT------ -----ACTAA TTAAATTGTT TGAGATAGAT CTGAAGActt chimp TGAT------ -----ACTAA TTAAATTGTT TGAGATAGAT CTGAAGActt gorilla TGAT------ -----ACTAA TTAAATTGTT TGAGATAGAT CTGAAGActt orangutan CGAT------ -----ACTAA TTAAATTGTT TGAGATAGAT CTGAAGActt gibbon CGAT------ -----GCTAA TTAAATTGTT TGAGATAGAT CTGAAGActt colobus_monkey CAAT------ -----ACTAA TTAAATTGTT TGAGATAGAT CTGAAGActt vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TGAT------ -----ACTAA TTAAATTGTT TGAGATAGAT CTGAAGActt dusky_titi CGAT------ -----ACTAA TCAAATTGTG TGAGATAAAT CTGAAGActc owl_monkey CGAT------ -----ACTAA TTAAATTGTG TGAGATAAAT CTGAAGAttt squirrel_monkey CGAT------ -----ACTAA TTAAATTGTG TGAGATAAAT CTGAAGAttt marmoset CAAT------ -----ACTAA TTAAATTGTG TGAGATAAAT CTGAAGAttt galago CTAT------ -----ATGAA TTAAATTATT TGAGATAAAT CTGAAGActt mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit ttag------ -----agaaa CAAAATTGTT TGAGATAAAT CTGATGActt st_squirrel TCTAAAAATA AGCAGACTCA TTACATTTTT TGAGATAAAT CTAACCA--- guinea_pig TTTT------ -----ATTGA TTAAAGTATT TGAGGTAAAT GTGATGA--- rat CTCA------ -----ACTAA TCAACTTACT TGAGATAAAT TTGATGA--- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat TTAT------ -----ACTAA TTAAATTGTT TAAGGTAAAT CTGATATct- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse CTAT------ -----ACTAA TTGAATTGTT TGCAGTAAAT CTGATGAtt- armadillo TTAT------ -----ACTAA T-----TGTT TGTGATAAAT CTGGTGActt elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human aatacaattg aattttattt cttgTTATCA ATGG--TCTT TGCACTTAAC chimp aatacaattg aattttattt cttgTTATCA ATGG--TCTT TGCACTTAAC gorilla catacaattg aattttattt cttgTTATCA ATGG--TCTT TGCACTTAAC orangutan aatacaattg aattttattt cttgTTATCA ATGG--TCTT TGCACTTAAC gibbon aatacaactg aattttattt cttgTTATCA ATGG--TCTT TGCACTTAAC colobus_monkey aatacaatgg aattttattt cttaTTATCA ATGG--TCTT TGTACTTAAC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque aatacaatgg aattttattt cttgTTATCA ATGG--TCTT TGTACTTAAC dusky_titi aatacaatgg aattttattt tttgTTATCA ATGG--TCTT TGCACCGAAC owl_monkey aatacaatgg aatttta-tg tttgTTATCA ATGG--TCTT TGCACTTAAC squirrel_monkey aatacaatgg aattttattt tttgTTATCA ATGG--TCTT TGCACTTAAC marmoset aatacaatgg aattttattt tttgTTATCA ATGG--TCTT TGCACTTAAC galago aatccagtgg aattttattt cttgTTATCA ATGG--TCTT T------CAC mouse_lemur ---------- ---------- ----TTATCA ATGG--TCTT T------CAC lemur ---------- ---------- ----TTATCA GTGA--TCTT T------CAC rabbit aatacaatgg aattttattt cttgTTATCA ATGA--TCTT TCCATTTAAC st_squirrel ---------- ---------- ----TTATCA ATGG--TCTT TGCACTTAAC guinea_pig ---------- ---------- ----TTATCG ATGG--TCTT TGCACTTAAC rat ---------- ---------- ----TTATCA AATG--CCTT T-CACTTAAC mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ----TTATTG ATGG--TCTT TGCACTTAAC shrew ---------- ---------- ----TTATCA ATGG--TCTT TGCACTTCAC rfbat actacaatga ca-tttattt cttgTTATCC ATGG--TCTT TGCCCTTAAT cpbat ---------- ---------- ----TTATCA ATGC--TCTT TGCACTTAAT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ----TTATCG ATGG--TCTT TGC-----AC ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ----TTATCG ATGGTCTCTT TAC-----AC pig ---------- ---------- ----TTACTG ATGG--CCTT TGCACTTAAC muntjak_indian ---------- ---------- ----TTATCG AAGG--CCTT TGCACTTAAC sheep ---------- ---------- ----TTATCA AAGG--CCTT TGCACTTAAC cow ---------- ---------- ----TTATCA AAGG--CCTT TGC-----AC horse aatacaatga aattttcttt cttgTTATCG ATGG--TCTT TGCACTTAAC armadillo aatacaatgg aactttattt cttgTTATCA GTGG--TCTT TGCATTTTAC elephant ---------- ---------- ----TTATCA ATGG--TCTT TGCAC----- tenrec ---------- ---------- ----TTATCA AGGG--TCTC TACGCTTGGC wallaby ---------- ---------- ----TCTTCA TTTG------ --------CC monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ----TCTTTG TTTG------ -------AAC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTGTTT---A AATA----AA --A---G--- --AAAAA-AT TGGCAGGTCA chimp TTGTTT---A AATA----AA --A---G--- --AAAAA-AT TGGCAGGTCA gorilla TTGTTT---A AATA----AA --A---G--- --AAAAA-AT TGGCAGGTCA orangutan TTGTTT---A AATA----AA --A---G--- --AAAAA-AT TGGCAGGTCA gibbon TTGTTT---A AATA----AA --A---G--- --AAAAA-AT TGGCAGGTAA colobus_monkey TTGTTT---A AATA----AA --A---G--- --AAAAA-AT TGGCAGGTCA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TTGTTT---A AATA----GA --A---G--- --AAAAA-AT TGGCAGGTCA dusky_titi TTGTT----- --TA----AA --A---G--- --AAAAA-AT TGGCAGGTCA owl_monkey TTGTTT---A AATA----AA --A---G--- --AAAAA-AT TGGCAGGTCA squirrel_monkey TTGTTT---A AATA----AA --A---G--- --AAAAA-AT TGGCAGGTCA marmoset TTGTTT---A AATA----AA ---------- --AAAAA-AT TGGCAGGTCA galago TTGTTT---A AATA----AA --G---A--- --GAAAA-AT TGGCAGGTCA mouse_lemur TTGTTT---A AATA----AA AGG---G--- --GGGAA-AT TGGCAGGTCA lemur TTGTTT---A AATA----AA A-G---A--- --AAAAG-AT TGGCAGGTCA rabbit TTGTTTGG-A AAGA----AA ---------- --AAAAA--T TGGCAGATCA st_squirrel TTGTTTAG-A AATA----AA --T---G--- --AAAAAAAT TGGCAGGCCA guinea_pig TTGTTTAG-A AATA----AT --T---G--- --AAAAACAT TGGCTGGTCA rat GTGTTTAG-A ACTA----AA --T---GTGG GAAAAAATGT TGGCAGGTCA mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTGTTTAG-A AATA----AA --A---G--- --T-----CT TGGCAAATAA shrew TTGTTTAG-A AAGA----AA --A---G--- --AAAAGACT TGGCAGGTCA rfbat TTGTTTAG-A AAGA----AA --A---G--- --GAAAAACT TGGCAGGTCA cpbat TTGTTTAG-A AATT----AA --A---A--- ---AAAAACT TGGCAGGTCA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TTGTTTAG-A AATA----AA --A---G--- --AGATAACT TGGCAGGTCA ferret ---------- ---------- ---------- ---------- ---------- dog TTGTTTAG-A AATA----AA --A---G--- --AGAAAACT TGGCAGGTCA pig TTGTTTAG-A AATA----AA --A---G--- --AAAAAACT TGGCAGGTCA muntjak_indian TTGTTTAG-A AATA----AA --A---G--- --AAAAAACT TGACAGGTCA sheep TTGTTTAG-- --------AA --A---G--- --AAAAAACT TGACAGGTCA cow TTGTTTAG-G AATA----AA --A---G--- --AAAAAACT TGACAGGTCA horse TTGTTTAGGA AAAA----AA --A---G--- --AAAAAACT TGGCAGGTCA armadillo TTGTTTAG-A AATA----AA --A---G--- --GAGAA-AT TGGCAGGCCA elephant -TGTTTA--A AACA----GA --A---G--- --AAAAA-AT TGGCAGGTCA tenrec TTGCTTAG-A AACA----GA --AAGGG--- --AAAAA-AT TGGCAGGTCA wallaby CTGTTTAG-T GGGGGCTTGG --G---G--- --GGTGG-AT TGGCAGGTCG monodelphis ---------- ---------- ---------- ---------- ---------- opossum TTGTTTAG-T AAAA----AA --A---A--- --AAAAT-AT TGGCAGGTCA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CCTTG-TTCT A-TTTT--TA ACTACCATAT TGTT------ -CAATTTT-- chimp CCTTG-TTCT A-TTTT--TA ACTACCATAT TGTT------ -CAATTTT-- gorilla CCTTG-TTCT A-TTTT--TA ACTACCATAT TGTT------ -CAATTTT-- orangutan CCTTG-TTCT A-TTTT--TA ACTACCATAT TGTT------ -CAATTTT-- gibbon CCTTG-TTCT A-TTTT--TA ACTACCATAT TGTT------ -CAATTTT-- colobus_monkey CCTTG-TTCT A-TTTT--TA ACTGCCACAT TGTT------ -CAATTTT-- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CCTTG-TTCT A-TTTT--TA ACTACCATAT TGTT------ -CAATTTT-- dusky_titi CCTTG-TTCT A-TTTT--TA ACTACTATAT TGTT------ -CAATTTT-- owl_monkey CCTTG-TTCT A-TTTT--TA ACTACTATAT TGTT------ -CAATTTT-- squirrel_monkey CCTTG-TTCT A-TTTT--TA ACTACTATAT TGTT------ -CAATTTT-- marmoset CCTTG-TTCT A-TTTT--TA ACTACTATAT TGTT------ -CAGTTTT-- galago CCTTG-TTCC A-TTTT--CA ACCAATGTAT TGTC------ -CGATCTG-- mouse_lemur CCTTG-TTCT A-CTTT--TA ACTACCATAT TGTT------ -CAATTTG-- lemur CCTTG-TTCT A-TTTT--TA ACTACCATAT TGTT------ -CAATTTG-- rabbit CTTTG-TTCT GTTTTT--TA ACTACTATAT TGTT------ -CAACTTG-- st_squirrel CCTTG-TTCT A-TTTT--TA ACGACTGTAT TGTT------ -CAGTTTG-- guinea_pig CCTTG-TTCT G-TTTT--TA ATGACTATAT TGTT------ -CAATTTT-- rat CCTTG-TTCT G-GTTT--AG ATGAC-ATAT TGTT------ -CATTGTG-- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TCTTG-TTCT ---------- ---------- ---------- ---------- shrew CCTTG-TTCT A-TTCT--TG ACTGCTGTAT TGTT------ -CAATGTGAA rfbat CCTTG-TTCT G-TTTT--TA ACTACCATAT TGAC------ -CAATTTG-- cpbat CATTG-TTCC A-TTTT--TA ACTACTATAT TGTT------ -CACTTTG-- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CCTTG-TTCT A-TTTT--TA ACTACTATAT TGTT------ -CAATTTG-- ferret ---------- ---------- ---------- ---------- ---------- dog CCTTG-TTCT A-TTTT--TA ACTACTATAT TGTT------ -CAACTTG-- pig CCTTG-TTCT A-TTTT--TA ACTACTATAT TGTT------ -CAATTTG-- muntjak_indian CCTTG-TTCT A-TTTT--TA ACTACTATAT TGTT------ -CAATTTC-- sheep GCTTG-TTCT A-TTTT--TA ACTACTATGT TGTT------ -CAATTTC-- cow CCTTG-TTCT A-TTTT--TA ACTACTGTAT TGTT------ -CAATGTC-- horse CCTTG-TTCT A-TTTT--TA ACTACTATGT TGTT------ -CAATTTC-- armadillo CCTTG-TTCT A-TTTT--TA ACTATTATAT TGTT------ -CAATTTG-A elephant CTTTG-TTCT A-TTTC--TA ACTGCCATAT TGTTAAACGT TCAATTTT-- tenrec CTTTG-TTCT A-TTTT--TA ACTGCTATAT TCTT------ -CAATTTG-- wallaby ACATGATCCT A-CTTT--TA ACTATTATAT TATT------ -CAACTTG-- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ACATGATCCT A-TTTT--TC TCTATTATAT TGTT------ -CAACTTG-- platypus ---------- A-TTTT--TA ATTACTGCAT TGTT------ -CAATGTG-- chicken ---------- A-CTCTCG-- CAGAGTCTAT TGTT------ -AAGTTTG-- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AACAAGAGTT CAGGGTGAGG AAGGTTATAG CTGAGGCATT TACAAGGATT chimp AACAAGAGTT CAGGGTGAGG AAGGTTATAG CTGAGGCATT TACAAGGATT gorilla AACAAGAGTT CAGGGTGAGA AAGGTTATAG CTGAGGCATT TACAAGGATT orangutan AACAAGAGTT CAGGGTGAGG AAGGTTATAG CTGAGGCATT TACAAGGATT gibbon AACAAGAGTT CAGGGTGAGG AAGGTTATAG CTGAGGCATT TACAAGGATT colobus_monkey AACAAGAGTT CAGGGTGAGG AAGGTTATAG CTGAGGCATT TACAAGGATT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AACAAGAGTT CAGGGTGAGG AAGGTTATAG TTGAGGCATT TACAAGGATT dusky_titi AACAAGAGTT CAGAGTGAGG AAGGTTATAG CTGAGGCATT CACAAGGATT owl_monkey AACAAGAGTT CAGAGTGAGG AAGGTTATAG CTGAGGCATT CACAAGGATT squirrel_monkey AACAAGGGTT CAGAGTGAGG ACGGTTATAG CTGAGGCATT CACAAGGATT marmoset AACAAGAGTT CAGAGTGAGG AAGGTTATAG CTGAGGCATT CACAAGGATT galago AACATGAGTT CAGGGCACGG AAGGTGATAG CTGAGGCATT CGCAAGGATT mouse_lemur AACAAGAGTT CAGGGTGAGG AAAGTTGTAG CTGAGGCATT CACAAGGATT lemur AACAAGAGTT CAGAGTGAGG AAGGTTGTAG CTGAGGCATT CACAAGGATT rabbit AACGAGAGTT CAGGGTGAGG AAGGTTAAAG CTGAGGCATT CACAAGGATT st_squirrel AACAAGAGCT CAGGGTGAGG AAGGTTATAG CTGAGGTATT CACAAGGATT guinea_pig AACAAGAGTT CAGGGTGAGG AAGGTTATAG CCGAGGCATT CATAAGGATT rat AACAAGAGTT TGGGGACA-G AAGGTTATAG CTCAAGTATT CACAAGCATT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew AAAAAGAGCT CAGGGTGAGG AAGATTATAA CTGGGGAATT TACAAGGATT rfbat TAAAAGAGTT GG-GGTGAGG AAGATTAGAG CTGAGACATT CACAAGGATT cpbat GAAAAGAGTT CACAGTGAGG AAGATTATAG CTGAGGCATT CACAAGGATT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AAAAAGAGTT CAGGGTGAGG AAGATTATAG CTAAGGCATT CACAAGGGTT ferret ---------- ---------- ---------- ---------- ---------- dog AAAAAGAGTT CAGGGTGAGG AAGATTATAG CTGAGGCATT CAGAAGGATT pig AAAAAGAGTT CAGAATAAGA AAGATTATAG ATGAGGCATT CACATGGATT muntjak_indian AAAAATAGTT CAGAATGGGA AAGATTACAG CTGAGACATT CACGAGGATT sheep AAAAAGAATT CAGGGTGGGA A--------- --------TT CACAAGGATT cow AAAAAGAGTT CAGGGTGAGA AAGATTACAG CTGAGACATT CACAAGGATT horse -AAAAGAGTT CAGGATAAGG AAGATTACAG CTGAGGCATT CACAAGGATT armadillo AAAAAGAGTT CAGGGTGAGG AAGATTATAG CTGAGGCATT CACAAAGATT elephant AAAAAGAGTT CAGGGTGAGG AACATTGTAG CTGAGGCATT CGTAAGGATT tenrec AAAAAGAGTT CAAGGTGAGG AAGATCTTAG CTGAGGCATT CGCAAGGATT wallaby GATAATAATT CAGGGTTAGG AAATTTATAG CTGGAGCACT GGAAAGGACT monodelphis ---------- ---------- ---------- ---------- ---------- opossum AATAATAATT CAGGTTTAGG AAATTTATAT CTGAAGCACT GGAAAGGACT platypus AATAATAGCT GTGGGTTAAG AAGTTTATAC CTAAGGCCCT CGCGAAAGCT chicken AATAGT---- ---------- -AGGTACAAA TTCAAGCATT TTCAAGAACT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TCCTG--TTT acttcttcag caaaattcca aaatctttaa c-ataaacaa chimp TCCTG--TTT acttcttcag caaaattcca aaatctttaa c-ataaacaa gorilla TCCTG--TTT acttcttcag caaaattcca aaatctttaa c-ataaacaa orangutan TCCTG--TTT acttcttcaa aaaaattcca aaatctttaa c-ataaacaa gibbon TCCTG--TTT acttcttcag caaaattcca aaatctttaa c-ataaacag colobus_monkey TCCTG--TTT acttcttcag caaaattcca aaatctttaa c-ataaacaa vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TCCTG--TTT acttcttcag caaaattcca aaatctttaa c-ataaacaa dusky_titi TCCTG--TTT acttcatcag caaaattcca aagtctttaa c-acaaacaa owl_monkey TCCTG--TTT acttcttcag caaaattcca aagtctttaa c-ataaacaa squirrel_monkey TCCTG--TTT ---------- ---------- ---------- ---------- marmoset TCCTG--TTT ACTTCTTCAG CAAAATTCCA ---------- ---------- galago TCCTG---TT ACTTCTTCAG GAAAATCCCA AAGTCTTTAG C-ATAA---- mouse_lemur TCCTG--TTT actgcttcag gaaaatccca aagtctttaa c-ataa---- lemur TCCTG--TTT acttcttcag gaaaatccca aagtctttaa c-acaa---- rabbit TCCTG--TTT acttcttcag gaaaattcca aaatctctaa c-a-aa---- st_squirrel TCCTG--TTT ---------- GAGAACTTCA ACAACCTTAA C-ATAA---- guinea_pig TCCTG--TTT ATTTACAAAG GAAAACTCTA ATATCCTTGA T-AGCA---- rat TCCTG--TTT ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- CCTT---AAG TGAAATTCCA AG-TCTTCTT TA-TAA---- shrew TCCTG--TTT ---------- ---------- ---------- ---------- rfbat TCCTG--TTT ACCT---TGG GACAATTCCA AA-TCCTAA- CA-AAA---- cpbat TCCTG--TTT atat---tag aaaaatgcta aa-ccttttt ca-aaa---- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TCCTGTTTTT ACTTCTTTTG GATAATTCTA AA-TCCTTAA T--AAA---- ferret ---------- acttctttag gaaaattcta aa-tctgtaa t--aaa---- dog TCCTG--TTT ACTTCTCTAG GAAAATTCTA AA-TCCATAA T--AAA---- pig TCCTG--TTT ---------- ---------- ---------- ---------- muntjak_indian TCCTG--GTT acttctttag gaaaatccaa aa-tccttaA C--AAA---- sheep TCCTG--GTT ACTTCTTTAG GAAAATCCCC GA-TCCTTAA C--AAA---- cow TCCTG--GTT acttctttag gaaaatccca aa-tccttaA C--AAA---- horse TCCTG--TTT ---------- ---------- ---------- ---------- armadillo TCCTG--TTT atttcttcag gaaaattcca aaatccttaa t-agaa---- elephant TCCTG--TTT ---------- ---------- ---------- ---------- tenrec TCCTG--GTT ---------- ---------- ---------- ---------- wallaby TCCTG--TTT ---------- ---------- ---------- -------ATA monodelphis ---------- ---------- ---------- ---------- ---------- opossum TCCTG--TTT ---------- ---------- ---------- ---------- platypus TCCTG--TTT ---------- ---------- ---------- ---------- chicken TCCTG-TTTT ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human atCCATACGT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG chimp atCCATACAT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG gorilla atCCATACGT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG orangutan atCCATACGT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG gibbon atCCATACAT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG colobus_monkey aaCCATACGT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque a-CCATACGT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG dusky_titi atCCATACGT CAGGTAGTGT TTGTATATAC TTCAGCGTAT CCAAGCAAGG owl_monkey atCCATACGT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset --CCATACGT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG galago AGCCATACGT CAAGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG mouse_lemur agCCATACGT CAAGCAGTGT TTGTATATAC TTCAGCGTAT CCAAGCAAGG lemur agCCATACGT CAAGCAGTGT TTGTATATAC TTCAGCGTAT CCAAGCGAGG rabbit atCCATATGT CAAGCAGTGT TTGTATGTAT TTCAGCGTAT CCAAGCAAGG st_squirrel ATCCATACGT CAGGCGGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG guinea_pig CTCCATACGT CAAGCAGTGT TTGTATATAT TTCAGTGTAT CCAAGCGAGG rat --CCATACGT CAGGCAGTGT TTGTATAT-C CTCGGCGTAT CCAAGCAGAG mouse ---------- ---------- ---------- ---------- ---------- hedgehog A-CCATACAT CAAGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG shrew --CTATACGT CAAGCAGTGT TTGTATATAT TTCAGTGTAA CCAAGCAAGG rfbat ACCCATACGT CAAGCAGTGT TTGTATATAT CTTAGCGTAT CCAAGCAAGG cpbat atGCATACGC CAAGCAGTGT TTGTATATAT TGCAGCGTAT CCAAGCAAGG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ATCCATACGT CAAGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG ferret atCCATACGT CAAGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG dog ATCCATACGT CAAGCAGTGT TTGTATATAT TTCAGTGTAT CCAAGCAAGG pig --CCATACGT CAAGCAGTGT TTGTATGTAT TTCAGCGTAT CCAAGCAAGG muntjak_indian ATCCATACGT CAAGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG sheep ATCCATACGT CAAGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG cow ATCCATACGT CAAGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG horse --CCATACGT CAGGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG armadillo atCCATACGT CAAGCAGTGT TTGTATATAT TTCAGCGTAT CCAAGCAAGG elephant --CTATACGT CAAGTGGTGT TTGTATATAT TTCAGTGTAT CCAAGCAAGG tenrec --CCATACGT CAACCAGTGT TTGCATCTAT TTCAGCGTAT CCAAGCAAAG wallaby ATCCATACGT CAAGCAGTGT TTGTATATGT TTCAGCGTAT CCAGGCAAAG monodelphis --CCATACGT CAAGCAGTGT TTGTATATGT TTCAGCGTAT CCAGGCAAAG opossum --CCGTACGT CAAGCAGTGT TTGTATATGT TTCAGCGTAT CCAGGCAAAG platypus --CCGTCCGT CAAGCGATGT TTGTGTACGT CTCCGGGTAT CCAGGCAGAG chicken --CCATACGT CAGGCACTGT TTGTATATGT TTCAGTGTAT CCAGGCAAAG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA chimp CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA gorilla CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA orangutan CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA gibbon CCTTTTTAAC TTTCCGTCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA colobus_monkey CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA dusky_titi CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA owl_monkey CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CCTTTTTAAC TTTCCATCCT ----ACAGAC -GAAGCTGTA CTTTCCTGAA galago CCTTTTTAAC TTTCCACCCT ----ACGGAC -GAAGCTGTA CTTTCCTGAA mouse_lemur CCTTTTTAAC TTTCCATCCT ----ACGGAC -GAATCTGTA CTTTCCTGAA lemur CCTTTTCAAC TTTCCATCCT ----ACGGAC -GAATCTGTA CTTTCCTGAA rabbit CCTTTTTAAC TTTCCATCCT ----ACGGAC -GAAGCTGTA CTTTCCTGAA st_squirrel CCTTTTTAAC TTTCCATGCT GTGGATGGAC -GGAGCTGTA CTTTCCTGAA guinea_pig CCTTTTTAAC TTTCCATGCT ----TTGGAC -GGAGCTGTA CTTTCCTGAA rat CCTTTTTAAC TTTCCGTGCT ----ACGGAC -AGATCTGTA CTTTCCTGAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog CCTTTTTAAA TTTCCATCCT ----ACTGAT -GGAGCTGTA CTTTCCTGAA shrew CCCTTTTAAC TTTCCATCCT ----ACGGCC -GGAGCTGTA CTTTCCTGAA rfbat CCTTTTTAAC TTTCCATCCT ----ACGGAT -GGAGCTGTA CTTTCCTGAA cpbat CCTTTTTAAC TTTCCATCCT ----ACGGAC -AGAGCTGTA CTTTCCTGAA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CCTTTTTAAC TTTCCATCCT ----ACGAAC -GGAGCTGTA CTTTCCTGAA ferret CCTTTTTAAC TTTCCATCCT ----ACAAAC -GGAGCTGTA CTTTCCTGAA dog CCTTTTTAAC TTTCCATCCT ----ACGAAC -GGAGCTGTA CTTTCCTGAA pig CCTTTTTAAC TTTCCATCAT ----ACGGAC -AGAGCTGTA CTTTCCTGAA muntjak_indian CCTTTTTAAC TTTCCATCCT ----ACGGAT -GGAGCTGTA CTTTCCTGAA sheep CCTTTTTAAC TTTCCATCCT ----ATGAAC -GGAGCTGTA CTTTCCTGAA cow CCTTTTTAAC TTTCCATCCT ----ACGGAC -GGAGCTGTA CTTTCCTGAA horse CCTTTTTAAC TTTCCATCCT ----ACGGAT -GGAGCTGTA CTTTCCTGAC armadillo CCTCTTTAAC TTTCCATCCT ----ACGGAC -GGAGCTGTA CTTTCCTGAA elephant CCTTTTTAAC TTTCCATCCT ----ACGGAC -GGAGCTGTA CTTTCCTGAA tenrec CCTTTTCAAC TTTCCATCCT ----ACGGAC -GGAGCTGGA CTTTCCTGAA wallaby TCTTTT-AAC TTTCCATCCT ----ACGGGC TGGAGCTGTA CTTTCCTGAA monodelphis TCTTTT-AAC TTTCCATCCT ----ACGGGC TGGAGCTGTA CTTTCCTGAA opossum TCTTTT-AAC TTTCCATCCT ----ACGGGC TGGAGCTGTA CTTTCCTGAA platypus C--TTTGGAC TTCCCGTCCT ----GTGGCC -CGAGCTGTT CTTTCCTGAC chicken CCTTTC-AAC TTTCCATCCT ----AGAGTT -CGAGCAGTA CTTTCCTGAA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC chimp TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC gorilla TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC orangutan TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC gibbon TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC colobus_monkey TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC dusky_titi TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC owl_monkey TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TGGCAGCCAG GAAAAAACTT -GGGGATTTG GCAGGAAGAC TGTGGGAAGC galago TGGCAGCCAG GAAAAAACGC -GGAGATTTG GCAGGAAGAC TGTGGGAAGC mouse_lemur TGGCAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC lemur CGGCAGCCAG GAAAAAGCTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC rabbit TGGCAGCCAG GAAAAAGCTT -GGAGGTTTG GCAGGAAGAC TGTGGGAAGC st_squirrel TGTCAGCCAG GAAAAAGCTT -GGAGATTTG GCAGGCAGAC TGTGGGAAGC guinea_pig TGGAAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC rat CGGCAGCCAG GAAAAATCTT -GAAGATTTG GCAGGAACAG GGTGGGAAGC mouse ---------- ---------- ---------- ---------- ---------- hedgehog TGGTAGCCAG GAAAAAGCTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC shrew CAGCAGCCAG GAAAAAACTT TGGAGATTTG GCAGGAAGAC TGTGGGAAGC rfbat TGGCAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAGGAC TGTGGGAAGC cpbat TGGCAGCCAG GAAAAAACTT -AGAGATTTG GCAGGAAGAC TGTGGGAAGC cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TGGCAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC ferret TGGCAGCCAG GAAAAAACTT -GGAGAATTG GCAGGAAGAC TGTGGGAAGC dog TGGCAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC pig TGGCAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC muntjak_indian TAGCAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC sheep CAGCAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC cow TAGCAGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAGAC TGTGGGAAGC horse TGGCGGCCAG GAAAAAACTT -GGAGATTTG GCAGGAAG-C TGTGGGAAGC armadillo TGACAGCCAG GAAAAAGCTT -GCAGATTTG GCAGGAAGAC TGTGGGAAGC elephant TGGCAGCCAG GAAAAAACTT -GCAGATTTG GCAGGAAGAC TGTGGGAAGC tenrec CGGCAGCCAG GAAAAAGCTT -GCAGATTTG GCAGGAAGAC TGTGGGAAGC wallaby TGGCAGCCAG GAAAAATTTT -GTAGATTTG GCAGGAAGAC TGTGGGAAGC monodelphis TGGCAGCCAG GAAAAATTTT -GTAGATTTG GCAGGAAGAC TGTGGGAAGT opossum TGGCAGCCAG GAAAAATTTT -GTAGATTTG GCAGGAAGAC TGTGGGAAGC platypus CGGCAGCCAG GAAAAATCTT -GTCGGCTTG GCAGGCCGCC CCGGGAAGGC chicken CATCAGCCAG G-AAAATTTT -GTAGATTTG GCAGCAAGAC TGTGGGAAGC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTGGTGTTCC A--------- -CCAGGC--- -TGAGATCTG GA-GCGG-AG chimp CTGGTGTTCC A--------- -CCAGGC--- -TGAGATCTG GA-GCAG-AG gorilla CTGGTGTTCC A--------- -CCAGGC--- -TGAGATCTG GA-GCAG-AG orangutan CTGGTGTTCC A--------- -CCAGGC--- -TGAGATCTG GA-GCGG-AG gibbon CTGGTGTTCC A--------- -CCAGGC--- -TGAGATCTG GA-GCGG-AG colobus_monkey CTGGTGTTCC A--------- -CCAGGC--- -TGAGATCTG GA-GCGG-AG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CTGGTGTTCC A--------- -CCAGGC--- -TGAGATCTG GA-GCGG-AG dusky_titi CTGGTGCTGC A--------- -CCAGGC--- -AGAGATCTG GA-GCAG-AG owl_monkey CTGGTGCTGC A--------- -CCAGGC--- -TGAGATCTG GA-GCAG-AG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CTGGTGCTGC A--------- -CCAGGC--- -TGAGATCTG GA-GCAG-AG galago CTGGTGCAAC A--------- -CCAGGC--- -TGGGATCTG GA-GCAG-AG mouse_lemur CTGGTGCAAC A--------- -CCAGGC--- -TGCGATCCG GA-GCAG-GG lemur CTGGTGCAAC C--------- -CCAGGC--- -TGCGATCCG GA-GCAG-AG rabbit CTGGTGCAAC C--------- -CCAGGC--- -TGAGATCTG GA-GCAGAGG st_squirrel CTGGTGCAAC A--------- -CCGGGT--- -TGAGATCTG GA-GCAGGGG guinea_pig CTGCTGCAAC A--------- -CCAAGC--- -TGAGATCTG GC-GCAGGAG rat CTGGTGCAAC A--------- -CCAAGC--- -TGCA--CTA GA-GCCGGGG mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTGGTGCAAC A--------- -CCAGGC--- -TGAGATCTG GAAGCAGAGG shrew CTGGTGCAGC A--------- -GCAGGC--- -TGAGATCTG GA-GCAGAAG rfbat CTGGTGCCAC A--------- -GCAGGC--- -TGAGATCTG GA-GCAGAGG cpbat CTGGTGCAAC A--------- -CCAGCC--- -TGGGATCTG GA-GCAGAGG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CTGGTGCAAC A--------- -CCAGGC--- -TGAGATCTG GA-GCAGAGG ferret CTGGTGCAAC A--------- -CCAGGC--- -TGAGATCTG GA-GGAGAGG dog CTGGTGCAAC G--------- -CTAGGC--- -TGAGATCTG GA-GCAGAGA pig CTGGTGCAAC A--------- -CCAGGCTGA GTGAGATCTG GA-GCAGAGG muntjak_indian CTGGTGCAAC A--------- -CCAGGC--- -TGAGATCTG GA-GCAGAGG sheep CTGGTGCAAC A--------- -CCAGGC--- -TGAGATCTG GA-GCAGAGG cow CTGGTGCAAC A--------- -CCAGGC--- -TGAGATCTG GA-GCAGAGG horse CTGGTGCAAC A--------- -CCAGCC--- -TGAGATCTG CA-GCAGAGG armadillo CTGGTGCAAC A--------- -CCAGCC--- -TGCGATCTG GA-GCAGAGG elephant CTGGTGCAAC A--------- -CCAGGC--- -TGAGATCTG GA-GCAGAGG tenrec CTGGTGCAAC A--------- -CCAGGC--- -TGAGATTTG GA-GCAGAGG wallaby CTGGTGCAAG A--------- -CCAGCC--- -TGAGAGCTG GA-GCAGG-- monodelphis CTGGTGCAAG A--------- -CCAGCC--- -TGAGAGCTG GA-GCAGGCT opossum CTGGTGCAAG A--------- -CCAGCC--- -TGAGAGCTG GA-GCAGGCT platypus CTGCTGCAGG AGCCCCCCGA GCCAAGC--- -CGGGCTCCC CG-ACAAAGA chicken CTGGTTCAAG A--------- -CCAGCCC-- -TGAGTGCTG GA-GCAGAGG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CT-----T-- --TCTACAAA GA-CAGAGGA GCGAAACACC T--------- chimp CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACACC T--------- gorilla CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACACC T--------- orangutan CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACACC T--------- gibbon CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACACC T--------- colobus_monkey CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACACC T--------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACACC T--------- dusky_titi CT-----T-- ----TACAAA GA-CAGAGGA GTGAAACACC T--------- owl_monkey CT-----T-- --TCTACAAA GA-CAGAGGA GTGAAACACC T--------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CT-----T-- --TCTACAAA GA-CAGAGGA GTGAAACACC T--------- galago CT-----T-- --TCTACAAA GG-CTGAGGA ACGCAACACC ---------- mouse_lemur CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACACC T--------- lemur CT-----T-- --TCTGCAAA GG-CAGAGGA GCGAAACACC T--------- rabbit CC-----T-- --TGTGCAGA GG-CGGACGA GAGCAACACC T--------- st_squirrel CT-----TGC TCTCTACAAA GG-CAGACGA GTGAAACACC T--------- guinea_pig CC-----T-- --TCTACAAA GG-CAGACGA GCGAAACACC T--------- rat CT-----T-- --TCTACAAA GG-CGGATGA GCAAAATCCC T--------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CC-----T-- -CTCTACAAA GA-CACAGAA GAGAAACACC T--------- shrew TT-----T-- --TCTACAAA GG-CAGAAGA GCGAAACACC T--------- rfbat CT-----T-- --TCTCCGCA GG-CAGAAG- ---CGGCACC T--------- cpbat CT-----T-- --TCTACAAA GG-CAGAAGA GTGCAACACC G--------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CT-----T-- --TCTACAAA GG-CAGAGGA GTGCAACACC T--------- ferret CT-----T-- --TCTACAAA GA-CAGAGGA GCGCAACACC T--------- dog CT-----T-- --TCTACAAA GG-CAGAGGA GCGCAACACC T--------- pig CTTTCTAT-- --TCTACAAA GG-CAGAGGA GTGAAACACC T--------- muntjak_indian CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACAC- ---------- sheep CT-----T-- --TCTACAAA GG-CAGAGGA GCGAAACACC T--------- cow CT-----T-- --TCTACAAA GG-CAGAGGA ACGAAACACC T--------- horse CT-----C-- --TCTACAAA AG-CAGAGGA GCGAAACACC T--------- armadillo CT-----T-- --TCTACAAA GA-CAGAGGA GCGAAACACC T--------- elephant CG-----T-- --TCCACAAA GG-CCGAGGA GTGAAACACC T--------- tenrec CT-----T-- --TCTGCTCA GG-CAGAGGA GAGCAACAAC C--------- wallaby CT-----T-- --TCTACAAA GGACAGACCA TCGAAACACC T--------- monodelphis CT-----T-- --TCTACAAA GGACAGACCA TCGAAACACC T--------- opossum CT-----T-- --TCTACAAA GGACAGACCG TCGAAACACC T--------- platypus AG-----G-- --TCCACG-- GG-CCGGGGG CTGCGGCCCC TTCATCCCCC chicken CT-----T-- --TATATAAA GA-GAGAGAA TCCAAACACC T--------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- chimp CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- gorilla CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- orangutan CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- gibbon CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- colobus_monkey CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- dusky_titi CTCTTTGTTT ---------- ---------- ----AGCTCT A--------- owl_monkey CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- galago CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- mouse_lemur CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- lemur CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- rabbit CCCTTTGTTT ---------- ---------- ----CGCTCT A--------- st_squirrel CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- guinea_pig TCCTTTGTTT ---------- ---------- ----AGCTCT A--------- rat CCTTTTGTTT ---------- ---------- ----CGCTCT A--------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- shrew CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- rfbat CCCTCTGTTT ---------- ---------- ----AGCTCT A--------- cpbat CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CCCTTTGTTT ---------- ---------- ----AGTGCT A--------- ferret CCCTTTGTTT ---------- ---------- ----AGTGCT A--------- dog CCCTTTGTTT ---------- ---------- ----AGTGCT A--------- pig CCTTTTGTTT ---------- ---------- ----AGCTCT A--------- muntjak_indian CTCTTTGTTT ---------- ---------- ----AGCTCT A--------- sheep CTCTTTGTTT ---------- ---------- ----AGCTCT A--------- cow CTCTTTGTTT ---------- ---------- ----AGCTCT A--------- horse CCCTTTGTTT ---------- ---------- ----AGCTCT G--------- armadillo CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- elephant CCCTTTGTTT ---------- ---------- ----AGCTCT A--------- tenrec CGCTTTGTTT ---------- ---------- ----AGCTCT A--------- wallaby CCCTTTGTTT ---------- ---------- ----CACCCT A--------- monodelphis CCCTTTGTTT ---------- ---------- ----CACCCT A--------- opossum CCCTTTGTTT ---------- ---------- ----CACCCT A--------- platypus TCCTCCGTTT CCGCCTTCCA GGGCTTGCGC TCACACCCCC ACACACAGCC chicken TCCTTTGTTT ---------- ---------- ----CTCGCT A--------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- ---------- -----CAAAT GGAGCCCCCA GATTGTAATC chimp ---------- ---------- -----CAAAT GGAGCCCCCA GATTGTAATC gorilla ---------- ---------- -----CAAAT GGAGCCCCCA GATTGTAATC orangutan ---------- ---------- -----CAAAT GGAGCCCCCA GATTGTAATC gibbon ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC colobus_monkey ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC dusky_titi ---------- ---------- -----CAAAT AGAGCCCCCA GATTGTAATC owl_monkey ---------- ---------- -----CAAAT AGAGCCCCCA GATTGTAATC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- -----CAAAT AGAGACCCCA GATTGTAATC galago ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC mouse_lemur ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC lemur ---------- ---------- -----CAGAT GGAGCCCCCA GATTGCAATC rabbit ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC st_squirrel ---------- ---------- -----CAAAT GGAGACCCCA GATTGTAATC guinea_pig ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC rat ---------- ---------- -----CAAAT AGAGGCCCCA GATTGCAATC mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC shrew ---------- ---------- -----CAAAT GGAGACCCCA GATTGTAATC rfbat ---------- ---------- -----CAAAC GGAGACCCCA GATTGCAATC cpbat ---------- ---------- -----CAAAT GGAGACCCCA GATTACAATC cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC ferret ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC dog ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC pig ---------- ---------- -----CAAAT GGAGCCCCCA GATTGCAATC muntjak_indian ---------- ---------- -----CAAAT GGAGACCCCA GATTGCGATC sheep ---------- ---------- -----CAAAT GGAGACCCCA GATTGCAATC cow ---------- ---------- -----CAAAT GGAGACCCCA GATTGCAATC horse ---------- ---------- -----CAAAT GGAGCCCCGA GATCGCAATC armadillo ---------- ---------- -----CAAAT GGATCCCCAA GATTGCAATC elephant ---------- ---------- -----CAAAT GGAGCCCCAA GATTGCAATC tenrec ---------- ---------- -----CAAAT GGAGCCCCGA GATTGCAATC wallaby ---------- ---------- -----TGAAC AGAGCCCCAA GATCACAATC monodelphis ---------- ---------- -----TAATT GGAGCCCCAA GATCGCTATC opossum ---------- ---------- -----TAATT GGAGCCCCAA GATCACTATC platypus ACACGCAATC ACACAAGGGG TCACCCAAAT GGAA-CCCCG GATCGCAATT chicken ---------- ---------- -----CAAAT GGAGCCCTGA GATTGCGATC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGGCCCTATT GTATAAA--- ----CTTGGG GTTTTC---- ACA-TTTT-T chimp AGGCCCTATT GTATAAA--- ----CTTGGG GTTTTC---- ACA-TTTT-T gorilla AGGCCCTATT GTATAAA--- ----CTTGGG GTTTGC---- ACA-TTTT-T orangutan AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T gibbon AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T colobus_monkey AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T dusky_titi AGGCGCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T owl_monkey AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T galago AGGTCCCATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T mouse_lemur AGG-CCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T lemur AGC-CCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T rabbit AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T st_squirrel AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTCT-T guinea_pig AGGTACTATT GTATAAA--- ----CTTGGG GTTTCC---- AAA-TTTC-T rat AGGTTCTATT GTGTAAA--- ----CTTGGG GTTTCC---- ACT-TTTT-T mouse ---------- ---------- ---------- ---------- ---------- hedgehog AGGCTCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T shrew AGGCTCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTTCT rfbat AGGCCCTATT GTGTAAA--- ----CTTGGG GTTTCC---- AAA-GTTT-T cpbat AGGCCCTATT GTGTAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AGG-CCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T ferret AGGCCCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T dog AGGCCCTATT GTATAAA--- ----GTTGGG GTTTCC---- ACA-TTTT-T pig ATGCCCTATT GTGTAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T muntjak_indian AGGCCCTATT GTATAAA--- ----CATGGG GTTTCC---- ACA-TTTT-T sheep AGGCCCTATT GTATAAA--- ----CATGGG GTTTCC---- ACA-TTTT-T cow AGGCCCTATT GTATAAA--- ----CATGGG GTTTCC---- ACA-TTTT-T horse AGACCCTATT GTGTAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T armadillo AGGAACTATT GTATAAA--- ----CTTGGG GTTTCC---- ACA-TTTT-T elephant AGGCTCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T tenrec AGCCTCTATT GTATCAA--- ----CTTGGG GTTTCC---- ACA-TTTC-T wallaby AAGACCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T monodelphis AGGACCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T opossum AGGACCTATT GTATAAA--- ----CTTGGG GTTTCC---- ACATTTTT-T platypus AGCACCCATT GTCTCGGTTC CTTCTTCGGA GTTTCC---- ACCTCCTT-T chicken AGGCCCTATT GTATAAG--- ----CACAGG CCTTTCCATT AGA-TTTT-T fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- chimp GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- gorilla GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- orangutan GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- gibbon GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- colobus_monkey GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- dusky_titi GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- owl_monkey GGCAT-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- galago GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- mouse_lemur GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAA C--------- lemur GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAA C--------- rabbit GGCAT----A TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- st_squirrel GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- guinea_pig GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AATCAATTAG C--------- rat GGCAC----A TTCTTTTT-- -CAGCTGGAA AACCAATTAG C--------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog GGCAC-CTTA TTATTTCT-- -CAGCTGGAA AACCAATTAG C--------- shrew GGCAC-CTTA TTATTTCT-- -CAGCTGGAA AACCAATTAG C--------- rfbat GGCAC-CTTA TTATTTTT-- -CATCTGGAA AACCAATTAG C--------- cpbat GGCAG-CTTT TTTTTTTTTT TCAGCTGGAA AACCAATTAG C--------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- ferret GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- dog GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- pig GGCAC-CTTA TTATGTTT-- -CAGCTGGAA AACCAATTAG C--------- muntjak_indian GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- sheep GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- cow GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- horse GGCAT-TTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- armadillo GGCAC-CTTA TTATTTTT-- -CAGCTGTTA AACCAATTAG C--------- elephant GGCAC-CTTA TTATTTTT-- -CAGCTGGAA AACCAATTAG C--------- tenrec GGCAC-CTTA TTATTTTT-- -CAGCTGGGA AATCAATTAG C--------- wallaby GGCAC-CTTA TTATTTTT-- -CAACTGGAA AACTAATTAG AAAGG----- monodelphis GGCAC-TTTA TTATTTTT-- -CAGCTGGAA AACTAATTAG AAGGG----- opossum GGCAC-TTTA TTATTTTT-- -CAGCTGGAA AACTAATTAG AAAGG----- platypus GGCAAGAAGG TTGTTGTT-- -TGGCTGGAA AGCCAATTAG A--------- chicken GGCAC-TTCA TTATTTTT-- -CAGCTGGAA AACtaattaa aatgattttt fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG chimp A--------- ---------T TC-TTTTTAT ATCTGGATGT TAATACT-TG gorilla A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG orangutan A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG gibbon A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG colobus_monkey A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG dusky_titi A--------- ---------T TC-TTTTTAT ATCTGGATGT TAATACT-TG owl_monkey A--------- ---------T TC-TTTTTAT ATCTGGATGT TAATACT-TC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset A--------- ---------T TC-TTTTTAT ATCTGGATGT TAATACT-TG galago A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATGCT-TG mouse_lemur A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG lemur A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG rabbit A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG st_squirrel A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG guinea_pig A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG rat A--------- ---------T TC-TTTTTAT ATTTAGGTGT TGGTGCTCTG mouse ---------- ---------- ---------- ---------- ---------- hedgehog A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG shrew A--------- ---------T TC-TTTTTAT ATCTAGGTGT TAATGCT-TA rfbat A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG cpbat A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG ferret A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG dog A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG pig A--------- ---------T TC-TTTCTAT ATCTG-GTGT TAATACT-TG muntjak_indian A--------- ---------T TC-TTTTTAT ATCTGAGTGT TAATACT-TG sheep A--------- ---------T TC-TTTTTAT ATCTGAGTGT TAATACT-TG cow A--------- ---------T TC-TTTTTAT ATCTGAGTGT TAATACT-TG horse A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAATACT-TG armadillo A--------- ---------T TCATTTTTTT ATCGGGGTGT TAATAGT-TG elephant A--------- ---------T TC-TTTTTAT ATCTGGGTGT TAAGGCT-TG tenrec A--------- ---------T TC-TTTTTAT ATCTTGGTGT TAAGACT-TG wallaby A--------- ---------T TC-TTTTTTT ATCTGGGTGT TAATACT-AT monodelphis A--------- ---------T TC-TTTTTTT ATCTGGGTGT TAATACT-AG opossum A--------- ---------T TC-TTTTTTT ATCTGGGTGT TAATACC-AG platypus AGGAGGGCTT TTCTTGTTTT GT-TTTTTTT ATCTGGGTGT TAATACT-AG chicken a--------- ---------t tt-ttttttt atCAGAGTGT TAATGCT-TT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA chimp GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA gorilla GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA orangutan GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA gibbon GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA colobus_monkey GGTCTTAAAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA dusky_titi GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA owl_monkey GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset GGCCTTAGAG CA-AATTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA galago GGCCTTAGAG CA-ATTTTTT GGCCTGTGGT CTCTTGGGCA ATGCCTGACA mouse_lemur GGCCTTAGAG CA-ATTTTCT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA lemur GGCCTTAGAG CA-ATTTTCT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA rabbit GGCCTTAGAG CAGTTTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA st_squirrel GGCCTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA guinea_pig GGCCTTAGAG CA-AGTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA rat GGCCTTAGAA C--AGCTTTT GGCCTGCAGT CTCTAGGGCC AGGCCTGACA mouse ---------- ---------- ---------- ---------- ---------- hedgehog GGCCTTAGAG AA-ATTTTTT GGCTTGTAGT CTCTTGGGCA ATGCCTGACA shrew AGCCTTACAG CA-AGTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA rfbat GGACTTAGAG CA-ATATTTT GGCCTGCAGT CTCTTGGGCA ATGCCTGACA cpbat GGACTTAGAG CA-AATTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard GGACTTAGAG CG-ATATTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA ferret GGACTTAGAG GG-ATATTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA dog GGACTTAGAG CG-TTATTTT GGCCTGTAGT CTCTTGGGCA AAGCCTGACA pig GGACTTAGAA TG-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA muntjak_indian GGACTTAGAG CG-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA sheep GGACTTAGAG CG-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA cow GGACTTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA horse GGACTTAGAG CC-ATTTTTT GGCCTGTAGT CTCTTGGGCA ATGCCTGACA armadillo GGCCCTAGAG CA-ATTTTTT GGCCTGTAGT CTCTTGGGCA CTGCCTGACA elephant AGCTTTAGAG CA-A-TTTTT GGCCTGTAGT CCCTTGGGCA ATGCCTGACA tenrec AGCCCTAGAG CG-A--TTTT GGCCTGTAGT CCCCTGGGCA ATGCCTGACA wallaby GGCTCTGGCC C--ATTTTCT GGCTTGTAGT CCCTAGGGCA ATGCCTGACA monodelphis GGCTCTGGCC C--GTTTTCT GGCTTGTAGT CCCCAGGGCA ATGCCTGACA opossum GGCTCTGGCC C--GTTTTCT GGCTTGTAGT CCCTAGGGCA ATGCCTGACA platypus GCCCGCCGGA CC-CTTTCCT GGA-CATCGT CCCC-AGGCG CTGCCTGACA chicken GGTTCTCAAC TA-CTCCACT GGCTTTCGGT CCCTAGGGCA AAGCCTGACA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AATTGAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A chimp AATTGAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A gorilla AATTGAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A orangutan AATTGAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A gibbon AATTGAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A colobus_monkey AATTGAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AATTGAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A dusky_titi AATTGAGATA AAATC-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A owl_monkey AATTGAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AATCGAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG ACAAAAC--A galago AATTAAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A mouse_lemur AATTGAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A lemur AATTGAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A rabbit AATTAAGATA AAACC-GTTA CTTCATGTGC TTCTACAAAG AGAAAAC--A st_squirrel AATTAAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A guinea_pig AATTAAGATA AAACC-ATTA CTTCATGTTT TCCTACAAAG AGAAAAC--A rat AATTAAGATA AAACC-GTTA CTTCATGTTT TCCTCCGAAG AGAAAAC--A mouse ---------- ---------- ---------- ---------- ---------- hedgehog AATTAAGATA AAACC-GTTA CTTCATGTTT CCCTACAAAG AGAAAAC--A shrew AATTAAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A rfbat AATTAAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAA AGAAAAC--A cpbat TATTAAGATA AAACT-GTTA CTTCATGTTT TGCTACAAAG AGAAAAC--A cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AATTAAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A ferret AATTAAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A dog AATTAAGATA AAACC-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A pig AATTAAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAA AGAAAAC--A muntjak_indian AATTAAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A sheep AATTAAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A cow AATTAAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAA AGAAAAC--A horse AATTAAGATA AAACC-GTTA CTTCATGTTT TCCTACTAAG AGAAAAC--A armadillo AATTAAGATA AAACT-GTTA CTTCATGTTT TCCTACAAAG AGAAAAC--A elephant AATTAAGATA AAACC-GTTA CTTCATGATT TCCTACAAAG AGAAAACAAA tenrec AATTAAGATA AAGCTGGTGA CGTCATGATT TCCTACCAAG AGAAAAC--A wallaby AATTAAGATA AAACC-GTTA CTTAATGTTT TCCTACTAAG AGAAAAC--A monodelphis AATTAAGATA AAACT-GTTA CTTAATGTTT TCCTACTAAG AGAAAAC--A opossum AATTAAGATA AAACT-GTTA CTTAATGTTT TCCTACTAAG AGAAAAC--A platypus AATTAAGATA AAGCC-GTTA CTTAATGA-T TCCTACAAAG GGCAAAC--- chicken AATTAAGATA AAGCC-ATTA CTTAATGTTC CCCTTCTGAG AGAAAAC--A fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- chimp AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- gorilla AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- orangutan AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- gibbon AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTC- colobus_monkey AAAACTGTTT CCTGTTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- dusky_titi AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- owl_monkey AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- galago AAAACTGCTT CCTGTTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- mouse_lemur AAAACTGTTT CCTGTTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- lemur AAAACTGTTT CCTGTTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- rabbit GAAACTGCTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- st_squirrel AAAACTGTTT CCTGCTCTTA TTAAGGGGAT GAAGTCAATT TCCACATTT- guinea_pig AAAACTGTTT CCTGCGCTTA TTAATTGAAT GAAGTCAATT TCCATGTTT- rat AAAACTGTTT CCTGCTCTTA TTAATTAGAT GGAGTCAATG TCCACATAC- mouse ---------- ---------- ---------- ---------- ---------- hedgehog AAAACCGTTT CCTGCTCTTA CTAATTGGAT GAAGTCAATT TCCACATTT- shrew AAAACTGTTT CCTGCTCTTA ATAATTGGAT GAAGTCAATT TCCACATTT- rfbat AAAACTATTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- cpbat AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATAT- ferret AAAACTGTTT CCTGCACTTA TTAATTGGAT GAAGTCAATT TCCACATTT- dog AAAACTGTTT CCTGCTCTTA CTAATTGGAT GAAGTCAATT TCCACAGTT- pig AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- muntjak_indian AAAACTGTTT CCTGTTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- sheep AAAACTGTTT CCTGTTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- cow AAAACTGTTT CCTGTTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- horse AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- armadillo AAAACTGCTT CCTGCGCTTA TTAATTGGAT GAAGTCAATT TCCACATTT- elephant AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCACATTC- tenrec AAAACTGCTT CCTGCTCTTA TTAATTGAAT GAAGTCAATT TCCACAGTC- wallaby AAAACTGTTT CCTGCTCTTA TTAATTGGAT GAAGTCAATT TCCAGGTTT- monodelphis AAAACTGTTT CCTGTCCTTA TTAATTGGAT GAAGTCAATT TCCAGGTTT- opossum AAAACTGTTT CCTGTCCTTA TTAATTGGAT GAAGTCAATT TCCAGGTTTA platypus AAAACTGTTT CCTGCTCCCA TTGATTGGGT G--GTCAGTT GCCACAA--- chicken AGAAGTATTT CCTGTTCTTA TTAATGGCAT GAAGCCAATT TC-------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AACAAAT-AA GAAGG----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA chimp AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA gorilla AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA orangutan AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA gibbon AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA colobus_monkey AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA dusky_titi AACAAAT-AA AAA-G----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA owl_monkey AACAAAT-AA AAAGG----- TAAGCATAAT CACGGTGT-- -CAACCCTTA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AACCAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CAACCCTTA galago AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- --GACCCTTA mouse_lemur AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CGACCCTTA lemur AACAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- -CGACCCTTA rabbit AACAAAT-AC AAAGG----- TAGGCACAAT CACAGTGT-- -AAGCCCTTA st_squirrel AACAAATAAA AAAGG----- TAGGCATAAT CAGGGTGT-- -CGACCCTTA guinea_pig AACAAAT-AA AAAGG----- TGGGCATAAT CAGGGTGT-- -CTACCCTTA rat AACAAAT-AG AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACCTTTA mouse ---------- ---------- ---------- ---------- ---------- hedgehog AACAAAT-AA ATAGG----- TAGACATAGG CAGAGTGT-- -CCACCCTTA shrew CACAAAT-AG AAAGG----- TAGGCATAAT CAGGGAGT-- -CAGCTCTTA rfbat AACAAAT-AA AAAGG----- TAGGTATAAT CAGGGTGT-- -CAGCCCTTA cpbat AACAAAT-AA AAAGG----- TAGACATAAT CAGGGTGT-- -CAACCCTTA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AACAAAT-AA AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACCCTTA ferret AACAAAT-AA AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACCCTTA dog AATAAAT-AA AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACCCTTA pig AACAAAT-AA AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACCCTTA muntjak_indian AACAAAT-AA AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACCCTTA sheep AACAAAT-AA AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACCCTTA cow AACAAAT-AA AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACCCTTA horse AACAAAT-AA AAAGG----- TAGGCATAAT CAGGGTGT-- -CAACACTTA armadillo AAAAAATAAA AAAGG----- TAGGCACAAT CAGGGTGTCA ACCACCCTTA elephant AA-AAAT-AA AAAGG----- TAGGCATAAC CAGGGTGT-- --CACCCTTA tenrec AAGAAAT-AA AAAGG----- TAAGCATAAT CAGGGTGT-- --CACCCTGA wallaby AAAAAAA-GG GGGGAGGGAA GAGGTGTAAT CAGGGTTT-- -CAACCCTTA monodelphis AAAAAAA-AG GTGGGGGG-- GGGGCACAAT CAGGGTGT-- -CAACCCTTA opossum AAAAAAA-AG GGGGGGAG-- GAGGCATAAT CAGGGTGT-- -CAACCCTTA platypus AAAAGGA-AA AAAAG----- AAGAAAGAAT TAATTAAT-- -GAATT---- chicken ---------- ---------- CAGGCAAAAT CTTGGTGT-- -GA---CT-- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TCTCTCCCCG ATTCCAGCCA TG-------- ---------- -----ACAAG chimp TCTCTCCCCG ATTCCAGCCA TG-------- ---------- -----ACAAG gorilla TCTCTCCCCG ATTCCAGCCA TG-------- ---------- -----ACAAG orangutan TCTCTTCCCG ATTCCAGCCA TG-------- ---------- -----ACAAG gibbon TCTCTCCCCG ATTCCAGCCA TG-------- ---------- -----ACAAG colobus_monkey TCTCTCCCCG ATTCCAGCCA TG-------- ---------- -----ACAAG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TCTCTCCCCG ATTCCAGCCA TG-------- ---------- -----ACAAG dusky_titi TCTCTCCCCG ATTTCAGCCC TG-------- ---------- -----ACAAG owl_monkey TCTCTCCCTG ATTCCAGCCC TG-------- ---------- -----ACAAG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TCTCTCCCTG ATTCCAGCCC TG-------- ---------- -----ACAAG galago TCTCTCTCCG ATTCCAGTCC TG-------- ---------- -----ACAAG mouse_lemur TCTCTC-CAG ATTCCAGTCC TG-------- ---------- -----ACAAG lemur TCTCTC-CCG ATTCCAGTCC TG-------- ---------- -----ACAAG rabbit TCTCTCCCCG ATTCCAGTCC CG-------- ---------- -----ACAAG st_squirrel TCGCT-CCCG ATTCCAGCCC TG-------- ---------- -----ACAAG guinea_pig TCTTTCCCCG ATTCCAGCCC TG-------- ---------- -----ACAAA rat TCTCTCCCCG ATTCCAGCCC TG-------- ---------- -----ACAAG mouse ---------- ---------- ---------- ---------- ---------- hedgehog TCTCTTCCCG ATTCCAGTTC TG-------- ---------- -----ACAAG shrew TCTCTCCCCG ATTCCAGTCC TG-------- ---------- -----AAAAG rfbat TCTCTCCCCG ATTCCAGGGC CC-------- ---------- -----ACAAG cpbat TCTCTCCCCG ATTCCAGCCC TG-------- ---------- -----ACAAA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TCTCTCCCCG ATTCCAGTCT TG-------- ---------- -----ACAAG ferret TCTCTCCCCG ATTCCAGCCC TG-------- ---------- -----ACAAG dog TCTCTCCCCG ATTCCAGCCC TG-------- ---------- -----ACAAG pig TCACTCCCCG ATTCCACCCC TG-------- ---------- -----ACAAG muntjak_indian TCTCTCCCCG ATTCCAGTCC TG-------- ---------- -----ACAAG sheep TCTCTCCCCG ATTCCAGTCC TG-------- ---------- -----ACAAG cow TCTCTCCCCG ATTCCAGTCC TG-------- ---------- -----ACAAG horse TCTCTCCCCG ATTCCAGCCC TG-------- ---------- -----ACAAG armadillo TCTCTCCCCG ATTCCAGCAC TG-------- ---------- -----GCTAG elephant TCTCCCCCCG ATTCCAGCCC TG-------- ---------- -----ACAAG tenrec TCTCCCCCCA ATTCCAGCCC TG-------- ---------- -----ACACG wallaby TCTTTCTCTG ATTCCAGCCA TG-------- ---------- -----ACAAG monodelphis TCTTTCCCTG ATTCCAGCTT TG-------- ---------- -----ACGAG opossum TCTTTCCCTG AGTGCAGCTT AG-------- ---------- -----ACGAG platypus TCCAGCCTAA ACAGCAGCCC TGGGGCCGAC CGGGGACAGC TGGCAAAAGG chicken ---------A TCCCCAGGGA TC-------- ---------- -----CCAGG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGGATTAGTC ATA----ACA ---GTCAA-G AG----GACA CTGCCCAGTT chimp TGGATTAGTC ATA----ACA ---GTCAA-G AG----GACA CTGCCCAGTT gorilla TGGATTAGTC ATA----ACA ---GTCAA-G AG----GACA CTGCCCAGTT orangutan TGGATTAGTC ATA----ACA ---GTCAA-G AG----GACA CTGCCCAGTT gibbon TGGATTAGTC ATA----ACA ---GTCAA-G AG----GACA CTGCCCAGTT colobus_monkey TGGATTAGTC ATA----ACA ---GTCAA-G AG----GACA CTGCCCAGTT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TGGATTAGTC ATA----AAA ---GTCAA-G AG----GACA CTGCCCAGTT dusky_titi TGGATGAGTC ATA----ACA ---GTCAA-G AG----GACA CTGCCCAGTT owl_monkey TGGATGAGTC ATA----ACA ---GTCAA-G AG----GACA CTGCCCAGTT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TGGATGAGTC ATA----GCA ---GTCAA-G AG----GACA CTGCCCAGTT galago GGGATTAGTC AGA----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT mouse_lemur TGGATTAGTC AGA----ACA ---GTTAA-G AG----GGCA CTGCCCAGTT lemur TGGATTAGTC AGA----ACA ---GTCGA-G AG----GGCA CTGCCCGGTT rabbit CAGATTAGTC ATA----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT st_squirrel TGGATTAGTC ATA----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT guinea_pig TGAATGAGTC ATA----ACA ---GTCAA-G AG----GGTA CTGCCCAGTT rat AGGATTAGTC ATA----ACT ---GGCAA-G AG----GGTA CTGCCCAGTT mouse ---------- ---------- ---------- ---------- ---------- hedgehog TGGATTAGTC ATACACAGCA ---CTCAA-G AG----GGC- ----CCAGTT shrew TGGATTAGTC ATA----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT rfbat TGGGTGAGTC ATG----ACG ---GTCAA-G AG----AGCA CTGCCCAGTT cpbat CGGATTAGTC ATA----ACA ---GTTAA-G AG----GGCA CTGCCCAGTT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TGCATTAGTC ATA----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT ferret TGGATTAGTC ATA----ACA ---GTC---A AG----GGCA CTGCCCAGTT dog TGGATTAGTC ATA----ACA ---GTCAAGA AG----GGCA CTGCCCAGTT pig TGGATTAGTC ATA----ACA CTTGACAA-G AG----GGCA CTGCCCAGTT muntjak_indian TGAATTAGTC ATA----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT sheep TGAATTAGTC ATA----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT cow TGAATTAGTC ATA----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT horse TGGATGAGTC ATA----ACA ---GTCAA-G AG----GGCA CTGCCCAGCA armadillo CAGATGAGTC ATA----ACA ---GTCAA-G GG----GGCA CTGCCCAGTT elephant GGGATTAGTC ATC----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT tenrec GGGATTAGTC ACC----ACA ---GTCAA-G AG----GGCA CTGCCCAGTT wallaby TCGATTAGTC ATA----GCA ---GTCCG-G AG----GGCA CTGCCCAGTT monodelphis TTGATTAGTC A--------- ----TCCA-G AA----GGCA CTGCCCAGTT opossum TTGATTAGTC ATA----GCA ---GTCCA-G AA----GGCA CTGCCCAGTT platypus GGGATGACTC AGA----GGC ---TGGAG-G AGGCCTGGCC CTGCCTAGTT chicken CAGGTTAGTC ACA----GCT ---GAGGA-A TG----GGCA CTGCCCAGTT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCGAAAGCA chimp TGAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCGAAAGCA gorilla TGAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCGAAAGCA orangutan TGAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCGAAAGCA gibbon TGAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCGAAAGCA colobus_monkey TAAGAGGAAT --AAACACAG CCAAAC---A TTTCCCTA-T CTCGAAAGCA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TAAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCGAAAGCA dusky_titi TGAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCGAA---- owl_monkey TGAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCGAA---- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TGAGAGGAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTCAAA---- galago TGAAAGAAAT --AAACAGAG CCAAAC---A TTTCCCTA-T CTTGAAAGCC mouse_lemur TGAAAGACAT --AAACAGAG CCAAAC---A TTCCCCTA-T CTTGAAAGCA lemur TGAAAGACAT --AAACAGAG CCAAGC---A TTTCCCTA-T CTTGAAAGCG rabbit TGAGAGAAGT --AAACACAG CCAAAT---A TTTCCCTA-T CTTGAAAGCA st_squirrel TGAAAGAAAT --AAACACAG CCAAAT---A TTTCCCTA-T CTAGAAAGTG guinea_pig TGAAAGAAAT --AAACAGAA CCAAAT---A TTTCCCTA-T CTTGAAAGCA rat GGAACAAAAT --AAACAGAG CCAAAT---A GTTCTGTA-T CTTAAAAGGC mouse ---------- ---------- ---------- ---------- ---------- hedgehog TGAAAGCAAC --AAACAGAG CCAAAT---A CTTCCCTA-T CTTGAAAGCA shrew TGAAAGAAAC --AAACAGAG CCAAAT---A TTTCCCTA-T CTTGAAAGCA rfbat TGAAAGACAC --AAACAGAG CCAAAT---A TTTCCCTA-T CTTGAAAGCA cpbat TGAAAGAAAT --AAACAGAG CCAAAT---A TTTCCCTA-T CTTGAAAGCA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TGAAAGAAAT --AAAGAGAG CCAAAT---A TTTCTCTG-T CTTAAGAGCA ferret TGAAAGAAAT --AAACAGAG CCAAAT---A TTTCCCTA-T CTTAAAAGCA dog GGAGAGAAAT --AAACAGAG CCAAAT---A CTTCCCTA-T CTTAAAAGCA pig TGAAAGAAAT --AAACAGAG CCAAAA---A TTTCCCTA-T CTTGAAAGCA muntjak_indian TGAAAGAAAT --AAACAAAG CCAAAA---A TTTCCCTA-T CTTGAAAGCA sheep TGAAAGAAAT --AAACAAAG CCAAAA---A TTTCCCTA-T CTTGAAAGCA cow TGAAAGAAAT --AAACAAAG CCAAAA---A TTTCCCTA-T CTTGAAAGCA horse AGAAAGAAAT --AATCAGAG CCAAAT---A TTTCCCTA-T CTTGAAAGCA armadillo TGAAAGAAAT --AAACACAG CCAAAT---G TTTCCCTA-T CTTGAAAGCA elephant TGAAAGGAAT --AAACAGAG CCAAAT---A GTTCCCTA-T CTTGAAAGCA tenrec TGAAAGAAAT --CAACAGGG CCAAAT---A TTTCCTTA-T CTTGAAAGCA wallaby TGAGAAGAAT --AAAC-GAG CCAAAT---- TTCCTCTG-T TTTGAAAATA monodelphis TG-AAAGAAT --AAAC--AG CCAAAT---- TTCCTCTGTT TTTGAAAATA opossum TGAAAAGAAT --AAACAGAG CCAAAT---- TTCCTCTG-T TTTGAAAATG platypus TGAGAGAGGC CGGAGCCCAG CTGAGC---A CAGCCCCAGT GTGGGCGATG chicken TGAGTGCATT --CAGAGCAG GCAAACCCAA CTTTTTTT-T CCAGAATGTA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human T--AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT TACGATTAGA chimp T--AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT TACGATTAGA gorilla T--AGCAAAG TCAAGTTCAT GC---TCCGG GAATGTAGTT TACGATTAGA orangutan T--AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT TACGATTAGA gibbon T--AGCAATG TCAAGTTCAC GC---TCCGG GAATGTAGTT TACGATTAGA colobus_monkey T--AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT TACGATTAGA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque T--AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT TACGATTAGA dusky_titi ---AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT GATGATTAGA owl_monkey ---AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT TACGATTAGA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT TATGATTAGA galago G--AGCAAAG TGAAGTTCAG AC---TCCAG GAATGTAGTT TATGATTAGA mouse_lemur G--AGCAAAG TAAAGTTCAC AC---TCCAG GAATGTAGTT TATGATTAGA lemur G--AGCACAG TAAAGTTCAC AC---TCCAG GAATGTAGTT TATGATTAGA rabbit G--AGCAAAG TAAAGTTCAT GC---TCCGG GAATGCAGTT TATGATTAGA st_squirrel G--AGCAAAG TAAAGTTCAT GA---TCCAG GAATGTAGTT GACGATTAAA guinea_pig G--AGCAAAG TAAAGTTCAT GC---TCCAG GAATGTAGTT CATGAGTAAA rat A--AACAAAA TAAAGTTCAT GT---TCCAG GAACGTAGTT TATGATTAGA mouse ---------- ---------- ---------- ---------- ---------- hedgehog T--AGCAAAA TAATG----C AC---TCCAG GAATGCAGTT TGTGATTAGA shrew G--AGCCAAG TCGAGTTCAC AC---TCCAG GAATGTAGTT TATGATTAGA rfbat G--AACAAAG TGAGGTTCAC CC---ACTAG GAATGTAGTT TCTGATTAGG cpbat G--AGCAAAG TAAAGTTCAC AC---TCTAG GAATGTAGTT TATGATTAGA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard G--AGCAAAG TAAAGTTCAC AC---TCTAG GAATGCGGTT TGTGATTTGA ferret G--AGCAAAG TGAAATTCAC AC---TCTAG GAATGTAGTT TATGATTAGA dog G--AACAAAG TAAAGTTCAC AC---TCTAG GAATGTAGTT TATGATTAGA pig G--AGCAAAG AAAAGTTCAC AC---TCTAG GAATGTAGTT TATGATTAGA muntjak_indian G--AGCAAAG AAAAGTTCAC AC---TCCAG GAATGTAGCT TATGATTAGA sheep G--AGCAAAG AAAAGTTCAC AC---TCAAG GAATGCAGCT TATGATTAGA cow G--AGCAAAG AAAAGTTCAC AC---TCTAG GAATGCAGCT TATGATTAGA horse G--AGCAAAG TAAAGTTCAC AC---TCTAG GAATGTAGTT TATGATTAGA armadillo G--AGCAAAG TAAAGTTCAC GC---TCCGG GAATGTAGTT TACGATTAAA elephant G--AGCAAAG TCAAGTTCAC GC---TCCGG GAATGTAGTT TATGATTAAA tenrec C--AGCAAA- ---------- ---------G GAATGCAATT TATGATTCAA wallaby G--GTTAAAA GGAAACTCAC AC---TCTGG TGATGTAGTT TGTGATTAGG monodelphis G--GTTAAAA GGAAATTCAT AA---TCTGG TGATGTAGTT TGTGATTAGA opossum G--GTTAAAA GGAAATTCAT AC---TCTGG TGATGTAGTT AGTGA-TAGG platypus C--CACTAGG CAAACTTCTG GCCTTCCTGG CATTGTGGTT TGGGACAATT chicken GATAACAAAA GTTCATGCAC TC---CTCAA GCATGTTTTT TTTTAATGTA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GAAACTGCCA TGGCAACATG CTGCAAATCA GAGGAGCAGC A-GACCACAA chimp GAAACTGCCA TGGCAACATG CTGCAAATCA GAGGAGCAGC A-GACCACAA gorilla GAAACTGCCA TGGCAACATG CTGCAAATCA GAGGAGCAGC A-GACCACAA orangutan GAAACTGCCA TGGCAACATG CTGCAAATCA GAGGAGCAGC A-GACCACAA gibbon GAATCTGCCA TGGCAACATG CTGCAAATCA GAGGAGCAGC A-GACCACAA colobus_monkey GAAACTGCCA TGGCAACATG AAGCAAATCA GAGGAGCAGC A-GACCACAA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque GAAACTGCCA TGGCAACAAG CAGCAAATCA GAGGAGCAGC A-GACCACAA dusky_titi GAAACTGCCA TGGCAACATG CCGCAAACCA GAGGAGTAGC A-GACCACAA owl_monkey GAAACTGCCA TGGCAACATG CTGCAAATCA GAGGAGCAGC A-GACCACAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset GAAACTGCCA TGGCAACATG CTGCAAATCA GAGGCGTAGC A-GACCACAA galago GAAACTGCCA TGGCAACACG CCACAAATCA GAGGAAT--- -----CGCGC mouse_lemur GAAACTGCCA TGGCAACATG CCACAACTCA GAGGAATAGC A-GACCACAA lemur GAAACTGCCA TGGCAACATG CCACAAATCA GAGGAATAGC A-GACCACAA rabbit GAAATTGCCA TGGCAACATG CCACAAATCG GAGGCATAGC A-GGCCACAA st_squirrel GAAATTGCCA TGGCAACTGG CCACAAATCA GAGGAATAGC A-GGCCACAA guinea_pig GAAACTGCCA TGGCAACATG CCACAAATCA GAGGAATAGC A-GACCACAA rat GAAATTGCCA TGGCAACATG CCACAGATCA GAGGAATAGC A-GACCTCAG mouse ---------- ---------- ---------- ---------- ---------- hedgehog GAAATTGCCA TGGCAACATG CCACAAGTCG GAGGAATAGT G-GACCGCAA shrew GAAGTTGCCA TAGCAACATG CCCCACGTCA AGGGAATGGC G-GACCACAA rfbat GATATTGCCA TGGAGACACG CCACAAGTCA CAGGAAT--- --GACCACAA cpbat GAAATTGCCA TAGAAACATG CTACAGGTCA GAGGAATAGC AAGTCTACAA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard GAAATTGCCA TGGTGACATG CCATAA-TCA GAGGAATAGC A-GACCACAA ferret GAAATTGCCA TGGCGACATG CCACGAGTCA GAGGAATGAC A-GACCACAA dog GAAATCGCCA CGGCGACATG TCCCAAGTCA GAGGAATAGC A-GACCACGA pig GAAATTGCCA TGGCGACATG CCACAAGTCA AAGGAATAGT A-GATCAC-A muntjak_indian GAAATTGCCA TGGTGACATG CCATGAGCTA GAGGAATAGC A-GACCAC-A sheep GAAATTGCCA TGGTGACATG CCACGAGTTA GAGGAATAGC A-GACCAC-G cow GAAATTGCCA TGGTGATATG CCACAAGTTA GAGGAATAGC A-AACCAC-A horse GAAATTGCCA TGGTGACATG CCACAAGTCA GAGGAATAGC A-GACCGCAA armadillo GAAATTGCCA TGGCAACATG CCACAAATCA AAGGAATAGC A-GACCACAA elephant GAAGTTGCCA TGGCAACGTG CCACAAATCA AAGGAATAGT A-GACCACAA tenrec GAAGTTGCTA TGGCAACATG CCACAATTCC TAGGAATAGC A-GGCCACGA wallaby ATAATTTCCA TGGTAACATG CCACAAATAA AAGGAATAGC A-GGCCACAA monodelphis GTCATTTCCA TAGCAACATG CCACAAATAA AAGGAATAGC A-GGCCACAA opossum GTCATTTCCA TGGCAACATG CCACAAGTAA AAGGAATAGC A-GGCCACAA platypus GGAA------ -------ATG GCACGAATGC GAGGGAT--- ---------- chicken AA--TCCCCA TGGCAACTTG CCTGATGCAA AGGTAACAGC A-AGGCAGAA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA chimp CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA gorilla CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA orangutan CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA gibbon CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA colobus_monkey CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA dusky_titi CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA owl_monkey CTT------- ------GGGA AAATCTCCAG GATGATCC-A -------AAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA galago CTC------- ------GGGA AAGTCTCCAG GATGATGC-A -------AAA mouse_lemur CTT------- ------GGGA AAATCCCCAG CATGACGC-A -------AAA lemur CTT------- ------GGGA AAATCCCCAG GATGATGCAA -------AAA rabbit CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA st_squirrel CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA guinea_pig CCT------- ------GGGA AAATCTCCAG AATGATGC-A -------AAA rat CCT------- ------GGCA AAGTCTCCCA GATGATGC-A -------AAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog CCT------- ------GGGA AAATCTCCAG TATGATGC-A -------AAA shrew ATC------- ------GGGA AGTCATCCAA GATGACGC-A -------AAA rfbat CTT------- ------GGGA AAATCC-CCG GATGATGC-A -------AAA cpbat CTT------- ------TGGA AAATCTGCAA GATGATGC-A AATATTTAAA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CTT------- ------GGGA AAATCTCCAG GATGATGA-A -------AAA ferret CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA dog CTT------- ------GGGA AAATTTCCAG GATGATGC-A -------AAA pig TTT------- ------GGGA AAATCTCCGG GATGATGC-A -------AAA muntjak_indian TTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA sheep TTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA cow TTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA horse CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA armadillo ATT------- ------GGGA AAATCTCCAG GATGATGC-G -------AAA elephant CTT------- ------GGGA AAATCTCCAG GATGATGC-A -------AAA tenrec CTT------- ------GGGA AATTCTCCAG GACGATGC-A -------AAA wallaby CTT------- ------GGGA AAATATCCAG GATGATGC-T -------GAA monodelphis CTT------- ------GGGA ATCTATCCAG AATGATGC-A -------AAA opossum CTT------- ------GGGA AACTATCCAG AATGATGC-A -------AAA platypus ---------- ------GGGA AAGTCTTCCG GTAGAGGC-A -------GAG chicken CCGTGAGATG CAGCTCGGGA ATACAGCCAG GGTGATGC-A -------AAG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TATTTCAAAG GGAAGTGGTA AAACAAAC-- ----AGAACG GAAAC----A chimp TATTTCGAAG GGAAGTGGTA AAACAAAC-- ----AGAACG GAAAC----A gorilla TATTTCGAAG GGAAGTGGTA AAACAAAC-- ----AGAACG GAAAC----A orangutan TATTTCGAAG GGAAGTGGTA AAACAAAC-- ----AGAACG GAAAC----A gibbon TATTTCAAAG GGAAGTGGTA AAACAAAC-- ----AGAATG GAAAC----A colobus_monkey TATTTCGAAA GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----A vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TATTTCGAAG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----A dusky_titi TATTTAGAAG GGATATGGTA AAACAAAC-- ----AGAAAG GAAAC----A owl_monkey TATTTAGAAG GGATATGGTA AAACAAAC-- ----AGAAAG GAAAC----A squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TATTTAGAAG GGATATGGTA AAACAAAC-- ----AGAAAG GAAAC----A galago TATTTAGAAG GGAAGTGGGA AAACAAAC-- ----AGAAAG GAAAC----A mouse_lemur TATTTACAAG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----A lemur TATTTAGAGG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----A rabbit TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAGAG GAAGC----A st_squirrel TATTTAGAGG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----G guinea_pig TATTTAGAAA GGAAGTAGCA AAACAAAC-- ----AGAAAG GAAAC----A rat TATTTAGAGG GGAAGTGGGA AAACAAAC-- ----AGAAAG GAAGC----A mouse ---------- ---------- ---------- ---------- ---------- hedgehog TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAACG GAAAC----A shrew TATTTAGAAG GGAAGTGGCC AAACAAAC-- ----AGAAAG GAAAG----A rfbat TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----A cpbat TATTTAGAAG GAAAGTGGTA AAACAAAC-- ----AGAAAA GAAAC----T cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TATTTAGAAG GCAAGTGGTA AAACAAAC-- ----AGAAAG GAA------A ferret TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAA------A dog TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAA------A pig TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAGA GAA------A muntjak_indian TATTTAAAAG GGAAGTGGTA AAACAAAC-- ----AGAAGG GAAAC----A sheep TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAGG GGA------A cow TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAGG GAAAC----A horse TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----A armadillo TGTTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----A elephant TATTTAGAAG GGAAGTGGTA AAACAAAC-- ----AGAAAG GAAAC----A tenrec TATTTAGAAG GGAAGTGGTT AAACAAAC-- ----AGAAAG GAAAC----C wallaby TATTTAGAGG GGAAG-CTGA AAGCAAACAA AAAAAAAAAG GAAGGAGCAG monodelphis TATTTAGAGG GGAAGCCTTA AAGCAAAC-- --AAAAAAGG AAAGG----G opossum TATTTAGAGG GGAAGCCTTA AAGCAAACAA AAAAAAAAAG GAAGG----G platypus TGTGCCGAGG ACGAGGG--- -AACTGAC-- ----AGATGG GAAGC----T chicken TGCTTTGAGG GGAAGCAGCA AGACAAAC-- ----ATGAGG GAAAC----G fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAGTCTTTGT AAG-----TA GTGGGCTTTC TTTGCAAGAA AATCTATTCT chimp CAGTCTTTGT AAG-----TA GTGGGTTTTC TTTGCAAGAA AATCTATTCT gorilla CAGTCTTTGT AAG-----TA GTGGGCTTTC TTTGCAAGAA AATCTATTCT orangutan CAGTCTTTGT AAG-----TA GTGGGCTTTC TTTGCAAGAA AATCTATTCT gibbon CAGTCTTTGT AAG-----TA GTGGGTTTTC TTTGCAAGAA AATCTATTTT colobus_monkey CAGTCTTTGT AAG-----TA GTGGGTTTTC TTTGCAAGAA AATCTATTCT vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CAGTCTTTGT AAG-----TA GTGGGTTTTC TTTGCAAGAA AATCTATTCT dusky_titi CAGTCTTTGT AAA-----TA GTGGGTTTTC TTTGCAAGAA AATCTATTCT owl_monkey CAGTCTTTGT AAG-----TA GTGGGTTTTC TTTGCAAGAA AATCTATTCT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CAGTCTTTGT AAG-----TG GTGGGTTTTC TTTGCAAGAA AATCTATTCT galago CAGTCTTTGT AAG-----CA CTGGGTTTTC TTTGCAACCA AATGTATTTT mouse_lemur CAGTCTTTGT AAG-----GA GTGGGTTTTC TTTGCAACAA AATCTATTCT lemur CAGTCTTTGT AAG-----GA GTGGGTTTTC TTTGCAACAA AATCTATTCT rabbit CAGTCTTTGT AAA-----TA GTGGGTTTTC TTTGTAACAA AATCTATTCT st_squirrel CAGTCTTTGT AAA-----TA GTGGGTTTTC TTTGCAACAA AATCTATTCT guinea_pig CGGTCTTTGT AAG-----TA ATGGGTTTTC TTTGAAACAA AATCTATTCT rat CAGTCTTTGT AAA-----TA GTGGGTTTTC TTTGCTACAG ATTCTGTTCT mouse ---------- ---------- ---------- ---------- ---------- hedgehog CAG---TTGT AAA-----TA GTGGATTTTC TTTGCAA-AA AAACTATTCT shrew CAA-CTTTGT AAA-----TA ATAG-T---- --------GA AATCTCTTCT rfbat CAGTCTTTGT AAA-----TA GTGGGCTTTC TTTGTAACAA AATCTATTCT cpbat CAGTCTTTGT AAG-----TA ATGGGTTTTC TTTGCAACAA AATTTATTAT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CAGTCTTTGT AAA-----TA GTGGGTATTC TTTGCAACAA AATCTATTCT ferret CAGTCTTTGT AAATAGTGTA GTGGGTTTTT TTTGCAACAA AATCTATTCT dog CAGTCTTTGT AAA-----TA GTGGGTTTTC TTTGCAACAA AACCTATTCT pig CAGTCTTTGT AAG-----TA GTGGGTTTTC TTTGTAATAC ATCCTATCCA muntjak_indian CTGTCTTTGT AAA-----CA GCGGGTTTGC TTTGCAACAA ACTCTATTCC sheep CTGTCTTTGT AAA-----CA GCGGGTTTGC TTTGCAACAA ATGCTATTCC cow CTGTCTTTGT AAA-----CA GCGGGTTTGC TTTGCAACAA ATTCTGTTCC horse CAGTCTTTGT AAA-----TA GTGGGTTTTC TTTGCAACAA AATCTATTCT armadillo CAGCCTTTGT TAA-----CA GTGGGTTTTC TTTGCGACAA AATCTATTCT elephant CACTCTTTGT AAA-----TA GTGGGTTTTC TTTGCAAC-- AATCTATTCC tenrec CAGTCTCTGT AAG-----TA GTGGGTTTTC TTTGCAGT-- CATCAATTCT wallaby CAGTCTTTGT AAA-----TT GTGGGCCC-C ATAACAACAA AATCTATTCT monodelphis CAGTCTTTGT AAA-----TT GTGGGTC--T TTAACAACAA AATCTATTCT opossum CAGTCTTTGT AAA-----TG GTGGCTCT-T TTAACAACAA AATCTATTCT platypus CAA------- ---------- ---------- ---------- ---------- chicken CAGTCTTTAT AAA------- ----ATTTTC CTAA-AGCTA ACTTGTTTAG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GAAG-----C AATATT-AT- TTAACAACGG -GGCTGTG-- -----TTTTG chimp GAAG-----C AATATT-AT- TTAACAACGG -GGCTGTG-- -----TTTTG gorilla GAAG-----C AATATT-AT- TTAACAACGG -GGCTGTG-- -----TTTTG orangutan GAAG-----C AATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTTTG gibbon GAAG-----C AATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTTTG colobus_monkey GAAG-----C AATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTTTG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque GAAG-----C AATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTTTG dusky_titi GAAG-----C AATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTTTG owl_monkey GAAG-----C AATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTTTG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset GAAG-----C AATATT-AT- TTAACAAGGG -GGTTGTG-- -----TTTTG galago GGAG-----C TATATT-AC- TTAACAAGGG -AGCTGTG-- -----TTCTG mouse_lemur GGAG-----C TATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTCAG lemur GGAG-----C TATATT-AT- TCAACAAGGG -GGCTGTG-- -----TTCTG rabbit GGAG-----C TGTATT-AT- TTAACAAGGG -GGCTGTG-- -----TTCTG st_squirrel GAAA-----C TATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTCTG guinea_pig GGAG-----C TATATT-AT- TTGACAAGAG -GCCCGTG-- -----TTCTA rat GGAG-----T TGAATT-AT- TTAACAAAGG -GTCTGTG-- -----TTCTG mouse ---------- ---------- ---------- ---------- ---------- hedgehog GAAG-----C TATAGT-GT- TTGACAATGA -GGCTGTG-- -----TTCTG shrew AGAG-----G TATAATTAT- TTAACAAGGG -GGCTGT--- -----TTCTG rfbat GGAG-----C TATAGT-GT- TTAACAA-GG -GGCTGTG-- -----TTCTG cpbat GGAG-----C TATATT-AC- TTAATAA-GG -GGTTATG-- -----TTCTG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard GGAG-----C TATATA-AT- TTAACAAGGG -GGCTGTA-- -----TTCTG ferret GGAG-----C TATATT-AT- TTAACAAGGG -GGCTGTG-- -----TTCTG dog GGAG-----C TATATT-AT- TTAACAAGGG AGACTGTG-- -----TTCTG pig GGAG-----C TATATT-AT- TTAACAAGGG -GGATGTA-- -----TTCTG muntjak_indian AGAG-----C TATATG-AC- TTAACAAGAG -GGCTGTTAA GTAATTTCTG sheep AGAG-----C TATATT-AC- TTAACAAGAG -GGCTATTAA GTAATTTCTA cow AGAG-----C TATATT-AC- TTAACATGAG -GGCTGTGAA GTAATTTTTA horse GGAC-----C TATATT-AT- TTAACAAGAG -GGCTGTG-- -----TTCTG armadillo GGAG-----C TATACG-AT- TTAACATGGG -GGCAGTG-- -----TTCTG elephant GGAG-----C CATATT-AT- TTAATAAGGG -GACTGTA-- -----TTCTG tenrec GGAG-----C CGTATT-AT- TTCAGAAGGG -TTTTGTG-- -----CTCTG wallaby GGAA-----C AAAAAT-CTA TTAACAAGAA -TGCTGTG-- -----TTCCT monodelphis GGAGAAAAAA AAAAAT-CT- TTAACAGGGA -GGCTGTG-- -----TTCCC opossum GGAG-----C AAAAAT-CT- TTAACAGGGA -GGCTGTG-- -----TACCC platypus ---------- ---------- ---------- ---------- ---------- chicken GGAA-----A GACTTG-GC- TAAACAAGGA -GACTGTG-- -----TGCAG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGTTT----G TTAT--ATTT GCTATCAAG- ---------- AGC-AGAA-A chimp AGTTT----G TTAT--ATTT GCTATCAAG- ---------- AGC-AGAA-A gorilla AGTTT----G TTAT--ATTT GCTATCAAG- ---------- AGC-AGAA-A orangutan AGTTT----G CTAT--ATTT GTCATCAAG- ---------- AGC-AGAA-A gibbon AGTTT----G CTTT--ATTT GCTATCAAG- ---------- AGC-AGAA-A colobus_monkey AGTTT----G TTAT--ATTT GCTATCAAG- ---------- AGC-AGAA-A vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AGTTT----G CTAT--ATTT GCTATCAAG- ---------- AGC-AGAA-A dusky_titi AGTTT----G CTAT--ATTT GCTATAAAG- ---------- AGA-AGAA-A owl_monkey AATTT----G CTAT--ATTT GCTATAAAG- ---------- AGA-AGAA-A squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AATTT----G CTAT--ATTT GCTATAAAC- ---------- AGA-AGAA-A galago AGTTT----G TTAC--ATTT GCTATCAAG- ---------- AGC-AGAA-T mouse_lemur AGTTT----G TTAC--GTTT GCTGTCAAG- ---------- AGC-AGAA-A lemur AGTTT----G TTAT--GTTT GCTATCAAG- ---------- AGC-AGAA-A rabbit ACTTT----G CTGT--GTTT GCCGACAAG- ---------- AGC-AGAA-A st_squirrel AGTCT----G CTCT--GTTT GCTGTCAGG- ---------- GGC-AGAATA guinea_pig AGCTT----A CTAG--GTTT GCTTTCAGG- ---------- AGA-AGAA-A rat AGTCT----G TTAG--G-TT GCTGTCACG- ---------- GGC-AGAG-A mouse ---------- ---------- ---------- ---------- ---------- hedgehog AGCTT----G --CT--GTTT TCTGTCAAA- ---------- AAA-AAAA-A shrew AGTTC----A ATAT--GTCT GCTACCAAG- ---------- AGA-AGAA-A rfbat AGTTT----G CTAT--GTTT ACTATCAAA- ---------- AGC-AGAA-A cpbat AGTTT----G CTAT--GTTT GTTATAAAA- ---------- AAC-AGAA-A cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AGTTT----G CTGT--GTTT GCTATCAAA- ---------- CAC-AGAA-A ferret AGTTT----G CTAT--GTTG GCTATTAAA- ---------- CAC-AGAA-A dog AGTTT----G CTAT--GTTT GCTATCAAA- ---------- CACAAGAA-A pig AGTTT----G CTAA--ATTT GCTATCAAC- ---------- AGC-ATAA-A muntjak_indian AGTTT----C CTAAATATCT GCTATCAAT- ---------- AGC-AGAA-A sheep AGTTT----A CTAAATATCT GCTATCAAC- ---------- AGC-AGAA-A cow AGTTT----A CTAAATATCT GCTATCAAC- ---------- AGC-AGAA-A horse AGTTT----G CT----GTTT GCTATCAAA- ---------- AGC-AGAA-A armadillo AGTTC----G CTAT--GTTT GCTGTCAAG- ---------- AGC-AGAA-A elephant AGTTT----G CTAT--GTTT GCTATCAAG- ---------- AGC-AGAA-A tenrec AGTTTTCTGG CTCT--GTTT GCTATCAAG- ---------- AGC-GGAA-C wallaby AGTTT----G CTAT--GTTT GGTCCTAAG- ---------- ATT-TAAA-A monodelphis AGTTT----G CCAT--GTTT GGTATTGAGT TTTTTTTTTT TCT-TAAA-G opossum AGTTT----G CCAT--GTTT GGTATGGAG- --ACTTTTTT TCT-TAAA-G platypus ---------- ---------- ---------- ---------- ---------- chicken AGTTT----G CCAT--GTTT GGGGCTGAA- ---------- AGC-AGAT-A fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATttcactga c--------- ------agaa gtgGCAGCTA TTTGGATCAG chimp ATttcactga c--------- ------agaa gtgGCAGCTA TTTGGATCAG gorilla ATTTCACTGA C--------- ------AGAA GTGGCAGCTA TTTGGATCAG orangutan ATttcactga c--------- ------aaca gtgGCAGCTA TTCGGATCAG gibbon ATttcactga c--------- ------aaac gtgGCAGCTA TTTGGATCAG colobus_monkey ATttcactga c--------- ------aaaa gtgGTAGCTA TTTGGATCAG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ATttcactga c--------- ------aaaa gtgGCAGCTA TTTGGATCAG dusky_titi ATctcactgt c--------- ------aaaa gtgGCAGCTA TTTGGATCAA owl_monkey ATttcactgt c--------- ------aaaa gtgGCAGCTA TTTGGATCAG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ATttcactgt c--------- ------aaaa gtgGCAGCTA CTTGGATCAG galago TTttcactga c--------- ------aaaa gtgACAGATA TTTGAATCAG mouse_lemur ATttccctga c--------- ------aaaa gtgACAGATA TTTGAATCAG lemur ATttcactga c--------- ------aaaa gtgACAGATA TTTGAATCAG rabbit ATttcactca c--------- ------aaaa gtgGCAGCTC TTCGGATCAG st_squirrel ATttcactca c--------- ------aaaa ctgGTAGCTA TTTGGATCAG guinea_pig ATTTCACTCA C--------- --------CA GTGGCAGCTA TTTGGATCAG rat ATattgctca c--------- ------aaaa gtgGCTTCTA TCTGAATTAG mouse ---------- ---------- ---------- ---------- ---------- hedgehog AGG-----AA A--------- -----AATAA GT-ACAGCTA TTTGAATCAG shrew AATTCACTAG C--------- -----AAGAA GT-CCAGTTA TTTGGATCCG rfbat ATTTCATTCA C--------- ------AGAA GT-GCAGCTC TGTGGGTCGG cpbat ATttcactca c--------- ------agag gt-GCAGCTA TGTGGATCAG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ATttcactca c--------- ------aaaa ac-GAAGCTA TTTGGATCAA ferret ATttcactca c--------- ------aaaa at-GCAGCTA TTCGGATCAG dog ATTTCACTCA Caaaaaaaaa aaaaaaaaaa aa-GCAGCTA TTTGGATCAG pig ATttcactca c--------- ------aaaa g--ATAGTTA TTTGGATCAG muntjak_indian ATttcactca c--------- ------aaca gt-GCAGCTA TTTGGATCA- sheep ATttcgctca c--------- ------aaca gt-GCAGCTA TTTGGATCA- cow ATttcactca c--------- ------aaca gt-GCAGCTA TTTGGATCA- horse GTttcactca c--------- ------caat gt-GCAGCTA TTTGGATCAG armadillo ATttcactca c--------- ------aaaa gtgGCAGCTC TTTGGATCAG elephant ATtttactca c--------- ------aaaa gtgGCAGCTA TTTGGATCAG tenrec ATtttactca c--------- ------aaaa gtgGCAGCTA TTTGAATCAG wallaby AT-------- ---------- --------AA GT--CAGCTA TTTGGATCAG monodelphis TT-------- ---------- --------AA GT--CAGCTA TTTGGATCAG opossum TT-------- ---------- --------AA GT--CAGCTA TTTGGATCAG platypus ---------- ---------- ---------- ---------- ---------- chicken TT-------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AATGG-AACT CTTTGATCTG TTTTAT-ATC TAAGTTT-AA CTATGGCCTG chimp AATGG-AACT CTTTGATCTG TTTTAT-ATC TAAGTTT-AA CTATGGCCTG gorilla AATGG-AACT CTTTGATCTG TTTTAT-ATC TAAGTTT-AA CTATGGCCTG orangutan AATGG-AACT CTTTGATCTG TTTTAT-ATC TAAGTTT-AA CTATGGCCTG gibbon AATGG-AACT CTTTGATCTG TTTTAT-ATC TAAGTTT-AA CTATGGCCTG colobus_monkey AATGG-AACT CTTTGATCTG TAAACTGATC TAAGTTT-AA CTATGGCCTG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AATGG-AACT CTTTGATCTG TAAACTGATC TAAGTTT-AA CTATGGCCTG dusky_titi AATGG-AACT CTTTGATCTC TTTTAC-A-- ----TTT-AA CTGTGGCCTG owl_monkey AATGG-AACT CTTTGATCCC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AATGG-AACT CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG galago CATGG-AACT CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG mouse_lemur AATGGAAACT CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG lemur AATGGAAACT CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG rabbit AATGGAAACT CTTTGATCTC TTTCAC-ATC TAAGTTT-AA CTGTGGCCTG st_squirrel AATGGAAAC- CTTTGATCTC TTTTAC-ATC TAAGTTC-AA CCGTGGCCTG guinea_pig AATGGAAAGT CTTTGATCTC TTTTAC-AAC TAAGTTT-AA CCATGGCCCA rat AATGGAAACT CTTTGATCTC TTTTAT-ATC TAAGTTTAAA CCATGGCCTG mouse ---------- ---------- ---------- ---------- ---------- hedgehog AATGGAAATG CTTTGATGTC TCTTAC-ATC TAAGTTT-AA CTGTGGCCTG shrew AGTGGAAATG CTTTGATGTC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTC rfbat A--------- ---------- ---------- ---------- ---------- cpbat AGTGGAAATG CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCATA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AATGGAAATT CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG ferret AATGGAAATG CTTTGATCTC TTTTAC-ATC TAAGTTT-AA TTGTGGCCTG dog AATGGAAATG TTTTGATCTC TTTTAC-ATC TAAGTTT-AA TTGTGGCCTG pig AATGGAAATG CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG muntjak_indian AATGGAAATG CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCTTG sheep AATGGAAAAG CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTATGGCTTG cow AATGGAAATG CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCTTG horse AATGGAAATG CTTTGATCTC TTTTAC-GTC TAAGTTT-AA CTGTGGCCCG armadillo AATGGAAACT CTTTGATCTC ATTTAC-ATC TAAGTTT-AA CTGTGGCTTG elephant AATGGAAACT CTTTGATCTA TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG tenrec AATGGGAATT CTTTGATCTC TTTTAC-ATC TAAGTTT-AA CTGTGGCCTG wallaby CATGAAAACT CTTTGATCTC TTTTTT-ATC T--ATTT-GC CTGTGAGCTG monodelphis AATGGAAACT CTTTGATCTC TTTTAT-ATG T--GTTT-GC CTGTGAGCTG opossum AATGGAAACT CTTTGATCTC TTTTAT-ATC T--GTTT-GC CTGTGAGCTG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GGTCCAAAAG GTAGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC chimp GGTCCAAAAG GTAGACTAAT TTTGGAAACT TCCCCTGTAC A-CTTTTATC gorilla GGTCCAAAAG GTAGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC orangutan GGTCCAAAAG GTAGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTGTC gibbon AGTCCAAAAG GTAGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC colobus_monkey GGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque GGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC dusky_titi GGCCAAAAAG G--AACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC owl_monkey GGCCAAAAAG G--AACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset GGCCAAAAAG G--AACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC galago GGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC mouse_lemur GGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC lemur GGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC rabbit GGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCCTGTAC ATTTTTTATC st_squirrel GGCCCAAAAG GTAGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC guinea_pig GGCCCAAAAT GTGTACTAAT TTTGGCAACT TCCTCTGTAC A-CTTTTGTC rat GACCCAAAAG GTGGGTTAAT TTTGGCAACT TCCCCTCTAC A-CTTTTATC mouse ---------- ---------- ---------- ---------- ---------- hedgehog AGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCTTGTAC A-CTTTTATC shrew AACCCAAAAG GTGGACTAAT TTTGGCAATG TCTCCCATAC A-CAGCCATC rfbat ---------- ---------- ---------- ---------- ---------- cpbat AGCCCAAAAG GTGGACTAAT TTTGGAAACT TCCCCTGTAC A-CTTTTTTG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard GGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCTTGTAC A-CTTTTATC ferret GGCCCAAAAG GTGGACTAAT TTTAGCAACT TCCCTTGTAC A-CTTTTATC dog GGCCCAAAAG GTGGACTAAT TCTGGCAACT TCCCTTGTAC A-CTTTTATC pig GGCCCAAAAA GTGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC muntjak_indian GGCCCAAAAG GTAGGATAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC sheep GGCCCAAAAG GTGGGATAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC cow GACCCAAAAA GTGGGATAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC horse AGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC armadillo AACCCAAAAG -TGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC elephant GGCCCAAAAG GTGGACTAAT TTTGGCAACT TCCCCTGTAC A-CTTTTATC tenrec GGCCCAAAAG -TAGACTAAT TTTGGCAACT TCCTCTGTAC A-CTTTTATC wallaby GG-CCAAAAG GTAGACTAAT TTTGGCAACT TCCCTTGTAT A-CTTTTATC monodelphis GG-CCAAAAG GTAGACTAAT TTTGGCAACT TCCCTTGTAT A-CTTTTATC opossum GG-CCAAAAG GTAGACTAAT TTTGGCAACT TCCCTTGTAT A-CTTTTATC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TAGAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GCATTTCCTC chimp TAGAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GCATTTCCTC gorilla TAGAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GCATTTCCTC orangutan TAGAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GTATTTCCTC gibbon TAGAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GTATTTCCTC colobus_monkey TAGAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GTATTTCCTC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TAGAGATAAA AGGAACACTT -GGAAGTATA AACAGAAGGT GTATTTCCTC dusky_titi TAGAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGAT GTATTTCCTC owl_monkey TAGAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGAT GTATTTCCTC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TGGAGATAAA AGAAACACTT -GGAAGCATA AACAGAAGAT GTATTTCCTC galago TAGAGACAAA AGAAACACTT -GGAAGCATA AACAGAAGGT GTATTTCCTC mouse_lemur TAGAGATAAA AGAAACACTT -GGAAGCATA AACAGAAGGT GTATTTCCTC lemur TAGAGATAAA AGAAACACTT -GGAAGCATA AACAGAAGGT GTATTTCCTC rabbit TAGAGATAAA AGGAGCACTT GGGAAGCATA AACAGAAGGT GTATTTCCTT st_squirrel TAGAGATAAA AGGAACATTT -GGAAGCATA AACAGAAGGT GTATTTCCTC guinea_pig TAGAGATAAA AGGAACATTT -AGAAACATA AACAAAAGGT GTATTTCCTC rat TAGAGATAAA AGCGCGGTTT -GCAAGTGTA AACAGAAGGT GTATTTCCTC mouse ---------- ---------- ---------- ---------- ---------- hedgehog TAAAGATAAA AGAAACACTC -AGGAGTATA AACAAAAGGT G--------- shrew TAAAGATAAA AGGAGTACTT -GGAAACAAA AACAGAAGGT GCATTTCCTC rfbat ---------- ---------- ---------- ---------- ---------- cpbat TAAAGATAAA AGAAACCCTT -GGAAGCATA AACAGAAGAT GTATTTC--- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TAAAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GCATTTC--- ferret TAAAGATAAA AGGAACACTT -GGAAGTATA AACAGAAGGT GTATTTC--- dog TAAAGATAAA AGGAACACTT -AGAAGTATA AACAGAAGGT GTATTTC--- pig TGAAGATAAA AGGAACATTT -GGATGCATA AACAGAAGGT GTATTTC--- muntjak_indian TGAAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GTATTTC--- sheep TGAAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GTATTTC--- cow TGAAGATAAA AGGAACACTT -GGAAGCATA AACAGAAGGT GTATTTC--- horse TACAGATAAA AGGAACACTT -GGAAGCATA AACAAAAGGT GTATTTC--- armadillo TGGAGATAAA ATAAATACTT -GGAAGCATA CACAGAAGGT GTGTTTC--- elephant TAGAGATAAA AGGAATGCTT -GGAAGCATA AACAAAAGGT GTATTTCCTC tenrec TAGAGATAAA AGGAGCACTT -GGAAGCATA AACAGAAGGT GTATTTC--- wallaby TAGAGATAAA AGGAACCCTT -GGAAGCATA AACAGAAGGT GAATTTC--- monodelphis TACAGATAAA AGGAACCCTT -GGAAGCATA AACAGAAGGT GAATTTC--- opossum TAGAGATAAA AGGAACCCTT -GGAAGCATA AACAGAAGGT GAATTTC--- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ACGGATGAGA AATATGAAAT TCCCATTAAA AAGGATTTCC TTTTATGTTC chimp ACGGATGAGA AATATGAAAT TCCCATTAAA AAGGATTTCC TTTTATGTTC gorilla ACGGATGAGA AATATGAAAT TCCCATTAAA AAGGATTTCC TTTTATGTTC orangutan ACGGATGAGA AATATGAAAT TCCCATTAAA AAGGATTTCC TTTTATGTTC gibbon ACGGATGAGA AATATGAAAT TCCCATTAAA AAGGATT--- TTTTATGTTC colobus_monkey AAGCATGAGG AATATGAAAT TCCCGTTAAA AAGGATTTCC TTTTATATTC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque AAGCATGAGA AATACGAAAT TCCCATTAAA AAGGATTTCC TTTTATGTTC dusky_titi AACCAGGAGA AATATAAAAT TCCCATTCAA AAGGATTTCA TTTGATGTTC owl_monkey AAGCAGGAGA AATATAAAAT TCCCATTCAA AAGGATTTCA TTTTATGTTC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AAGCAGGAGA AATAAAAAAT TCCCATTCAA AAGGATTCCA TTTTATGTTC galago AAGCATGAGA AATATGAAAT TCTCATTAAA AAGAACTTCC TTTTATGTCC mouse_lemur AGGCATGAGA A--ATGAAAT TCTCATTAAA AAGAACTGCC TTTTGTGTCC lemur AAGCATGAGA AATATGAAAT TCTCATTAAA AAGAACTCCC TTTTGTGTCC rabbit AAGCATGAGA AATA------ ---------A AAAAATTTCC TTTCATGACC st_squirrel AAGCATGAGA AATA------ ---------T AAGAATTTTC TTTTATGTCC guinea_pig AAGCAAGAGA AATA------ ---------A CGGAATTT-C CCTTATACCC rat AGGCATGAGA AATA------ ---------A AAGAATTT-- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew AACCATGAGA AATATAAAAT TCCCATTAAA AAGAATTTCC TTTTATGTCT rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- -----TTTTT TCTTTTTTTT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------A AAGAACTTCT TTTT-TGTCC ferret ---------- ---------- ---------A AAGAACTTCT TTTTACCTTC dog ---------- ---------- ---------A AAGAATTTCC TTTTATGTCC pig ---------- ---------- ---------A AAGAATTTCC TTTTATGTCC muntjak_indian ---------- ---------- ---------A AAGAATTTCC TTTTATGTCC sheep ---------- ---------- ---------A AAGAATTTCC TTTTATGTCC cow ---------- ---------- ---------A AAGAATTTCC TTTTATGTCC horse ---------- ---------- ---------A AAGAATTTCC TTTTATGTGC armadillo ---------- ---------- ---------- ---------- ---------- elephant AAGCATAAGA AATATGGAAT TCCCAT---A AAGAATTCCC TTTTATGTCC tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATTTC-AAc- -agagttata aa-------- ---------- tt----t-aa chimp ATTTC-AAc- -agagttata aa-------- ---------- tt----t-aa gorilla ATTTC-AAc- -agagttata aa-------- ---------- tt----t-aa orangutan ATTTC-AAa- -agagttatg aa-------- ---------- tt----t-aa gibbon ATTTC-AAc- -agagttata aa-------- ---------- tt----t-aa colobus_monkey ATTTC-AAc- -agaattaca aa-------- ---------- tt----t-aa vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ATTTCAAAc- -agaattata aa-------- ---------- tt----t-aa dusky_titi ATTTA-AGc- -agaattata aa-------- ---------- tt----taaa owl_monkey ATTTC-AAc- -agaattata aa-------- ---------- tt----taaa squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ATTTC-AGc- -agaattata aa-------- ---------- tt----taaa galago ATTTC--Ac- -ccaattata caa------- ---------- at----t-tt mouse_lemur ACTTC--Ac- -agaattata aaa------- ------ttgt tt----t-tt lemur ATTTC--Ac- -agaattata aaa------- -------aaa tt----t-tt rabbit ATTTC--A-- --GAATCATA AA-------- ---------- C-------AT st_squirrel ATTTC--A-- --GAGTTTTA AA-------- ---------- TT----G-TT guinea_pig ATTT---G-- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog --------A- ---------- ---------- ---------- ---------- shrew AATTT--GA- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat A--TT--Ga- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ATTTC--A-- ---------- ---------- ---------- ---------- ferret ATTTC--Tg- -agagttata aaaacttttt ctacatttcc tt----t-aa dog ATTTC--A-- ---------- ---------- ---------- ---------- pig ATTTC--Ac- -a-------- ---------- ---------- ---------- muntjak_indian ATTTC--Ac- ---------- ---------- ---------- ---------- sheep ATTTC--Ac- -a-------- ---------- ---------- ---------- cow ATTTC--Ac- -a-------- ---------- ---------- ---------- horse AGTTT--Ac- -a-------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ATTTT-CA-- ---------- ---------- ---------- ---------- tenrec --------TG TAAATTTATT AG-------- ---------- TTGATGT-AT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- ---------- ----aaagtc ttttcttcaa atactt---- chimp ---------- ---------- ----aaagtc ttttcttcaa atactt---- gorilla ---------- ---------- ----aaagtc ttttcttcaa atactt---- orangutan ---------- ---------- ----aaagta ttttcttcaa atacgt---- gibbon ---------- ---------- ----aaagta tcttcttcaa atactt---- colobus_monkey ---------- ---------- ----aaaaca ttttcttcaa atactt---- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ----aaaaca ttttcttcaa atacat---- dusky_titi ---------- ---------- ----aaaaca ttttcttcaa atactt---- owl_monkey ---------- ---------- ----aaaaaa atttcttcaa atactt---- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ----aaaata ttttcttcaa atactt---- galago ---------- ---------- ----aatgta ttttcttcaa atatct---- mouse_lemur ---------- ---------- ----tctaca ttttcttcaa gtacct---- lemur ---------- ---------- ----tctata ttttcttcaa gtacat---- rabbit ---------- ---------- ----TTTGTG TTTTCTTCAA ATACTT---- st_squirrel ---------- ---------- ----TTTATA TTTTCTCCAA ATACTT---- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret cccactgagc cacccaggag cccctctaca tttcctttaa atactt---- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ---------- ---------- ---------- ---------- ---------- elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ----TAGGAA ATCTTTCCCC ATATCCAGAG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- chimp ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- gorilla ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- orangutan ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- gibbon ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- colobus_monkey ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ttataa---- --tttaG--- --------AA ATCATTTTCA GCTTCACTG- dusky_titi ttataa---- --tttgG--- --------AA ATCATTTTCT GCTTCACTG- owl_monkey ttataa---- --tttgG--- --------AA ATCATTTTCC ACTTCACTG- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ttataa---- --ttt-G--- --------AA ATCATTTTCA GCTTCACTG- galago ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- mouse_lemur ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- lemur ttataa---- --tttgG--- --------AA ATCATTTTCA GCTTCACTG- rabbit TAGTAA---- --TTTGG--- --------AA ATCATTATCA GCTTGACGA- st_squirrel TGATAA---- --TTtgG--- --------AA ACCATTTTCA CAGTCACCA- guinea_pig ---------- ------G--- --------AA CTCATTTGTG GCTTGGCTG- rat ---------- ------G--- --------AA GTCATTCTCA GCCTTCTGG- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ------G--- --------AA ATAACTTTCA GCTTCACTA- shrew ---------- ------G--- --------AA GTCACTTTCA GCTTTGCCA- rfbat ---------- ------G--- --------AT ATCATTTTCA GTGTTACTA- cpbat ---------- ------G--- --------CA ATCATTGTCA ACTTCATTG- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ------G--- --------AA ATCATTTTCA GCTTCACTA- ferret ttgtaa---- --tttgG--- --------AA ATCATTTTCA GCTTCTCTA- dog ---------- ------G--- --------AA ATCATTTTCA GCTACACTA- pig ---------- ------A--- --------AA AT-ATTTTCA GCTTCACTG- muntjak_indian ---------- ------G--- --------AA AT-ATTTTCA GCTTCACTG- sheep ---------- ------G--- --------AA AT-ATTTTCA GCTTCACTG- cow ---------- ------A--- --------AA AT-ATTTTCA GCTTCACTG- horse ---------- ------G--- --------AA ATAATTTTCA GCTTCACTG- armadillo ---------- ------G--- --------AA ATCATTTTCA GCCTCACTGC elephant ---------- ---------- ---------- ---------- ---------- tenrec TTATAAAATT ATTTTGGAAA TCATTTTCAA ATCATTTTCA GCTTCACTGC wallaby ---------- ------G--- --------AA ATCATTTTCA GCTTCACTGC monodelphis ---------- ------G--- --------AA ATCATTTTCA GATTCACTGC opossum ---------- ------G--- --------AA ATCATTTTCA GCTCCACTGC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human --TCACACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC chimp --TCACACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC gorilla --TCACACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC orangutan --TCACACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC gibbon --TCACACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC colobus_monkey --TCACACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque --TCACACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC dusky_titi --TCACACAG CCCATTTCTA TTCTTAGTCA AGG-TTTGCT -TCCCT-GAC owl_monkey --TCACACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset --TCACATAG CCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC galago --TCACCCAG CCCATTTCTA TTTTTAGTCA GGG-TTTGCT -TCCCT-GAC mouse_lemur --TCACATAG CCCATTTCTA TTTTTAGTCA GGG-CTTGCT -TCCCT-GAC lemur --TCCCACAG CCCATTTCTA TTTTTAGTCA GGC-TTTGCT -TCCCT-GAC rabbit --CCACACAG CCCACTTCTA TTCTTACTCA GAG-CCTACT -TCTCC--AC st_squirrel --CCACA-AG CTCATCTCTA TTCTTAGTCC CCTCTGGGCC -CCCCT-GAC guinea_pig --CCACACAG TTCATATCTA TTCTTAGTCA GGT-TGAGCT -TCCCT-GAC rat --CCACACAG CTTGTTTCTA TTCTTAGTCA GGG-TGTGCA -TCCCC-AGC mouse ---------- ---------- ---------- ---------- ---------- hedgehog --CCACATAG ACTGCGTCTA TTCTTAAAC- -----CCAGT -TTACT-ACC shrew --CTACATGG TCCATATCTA TTCATAGTCG AGG-GTTGGT -TCCCT-GCC rfbat -----CACAG ACAATTTCTA TTGTTAGTCA GGT-TTTGTT -TCTCT-GAC cpbat -----CACAG CCCATTTCTA TTCTTAGTCA GGG-TTTGTT -TCTCT-GAC cat ---------- ---------- ---------- ---------- ---------- clouded_leopard --GCACACAG GCTATTTCTA TTCTTAGTCA GGG-TTTGCC -T------AC ferret --GCACACAG GATATTTCTA TTCTTAGTCA GGG-TTTGCC -T-----GAC dog --GAACACAG GCTATTTCTA TTCTTAGTCA GGG-TTTGCC -T-----GAC pig --CCACACAG ACCATTTCTA TTCTTA---- -GG-TTTGCT -TCTCT-GGC muntjak_indian --CTACACAG CTGATTTCTA TTCATA---- -GG-TTTGCT -TCCCT-GGC sheep --CTACACAG CTGATTTCTA TTCATA---- -GG-TTTGCT -TCCCT-GGC cow --CTACACAG CTGATTTCTA TTCATA---- -GG-TTTGCT -TCCCT-GGC horse --CCATACAG CCCACTTCTC TTCTTAGCCA GGG-TTTGCT -TCCCT-GAC armadillo --CCACACAG TCCATTTCTA TTCTTAGTCA GGG-TTTGCT -TCCCT-GAC elephant ---------- ---------- ---------- ---------- ---------- tenrec --CCACACAG -CCATTTCTA TTCTTA--CA GGG-TTTGCT GTGACA-AAC wallaby TTCCACACAA CGAATTTCTA TTCTTAGTCA GGG-TTTTCT -TCCCTAGAA monodelphis TTGCACACAA TTCATTGCTA TTCTTAGTCA GGG-TTTTCT -TCCCTGGAA opossum TTGCACACAA TTCATTGCTA TTCTTAGTCA GGG-TTTTCT -TCCCTAGAC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ------ATGG AAACA---CT ---GCAGCCA ACTGCCTAAG GCCACATTTC chimp ------ATGG AAACA---CT ---GCAGCCA ACTGCCTAAG GCCACATTTC gorilla ------ACGG AAACA---CT ---GCAGCCA ACTGCCTAAG GCCACATTTC orangutan ------ATGG AAACA---CT ---GCAGCCA ACTGCCTAAG GCCACATTTC gibbon ------ATGG AAACA---CT ---GCAGCCA ACTGCCTAAG GCCGCATTTC colobus_monkey ------ATGG AAACA---CT ---GCAGCCA ACTTCCTAAG GCCACATTTC vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque ------ATGG AAACA---CT ---GCAGCCA ACTTCCTAAG GCCACATTTC dusky_titi ------ATGG AAACA---CT ---GCAGCCA ACTTCCTAAG GCTACATTTC owl_monkey ------ATGG AAACA---CT ---GCAGCCA ACTTCCTAAG GCTACATTTC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ------ATGG AAACA---CT ---GCAGCCA ACTTCCTAAG GCTACATTTC galago AT----ATGG AAACA---TT ---GCC-CAG ACTTCCTAAG GCCACATTTC mouse_lemur AT----ATGG AAACA---TT ---GCC-CAG ACTTCCTAAG GCCACGCTTC lemur AT----ATGG AAACA---TT ---GCC-CAG ACTTCCCAAG GCCACGTTTC rabbit CT----ATAG AAAAG---T- ---GCAGCAG GCTTCCTCAG GCCATGCTTC st_squirrel CT----ATGG AAACA---CT GGAGCAGCAG ACTTCCTAAG GCCATGCTTC guinea_pig CT----ATTG AAAAG---TT ---GCCACAG ATTTCCTAAG GTCACACTTC rat CT----A-GG AAACA---CT ---GCAGCAG ATTTCCTAAG GCCAAGGTTC mouse ---------- ---------- ---------- ---------- ---------- hedgehog ACACATATGG AATCA---GT ---GCAACTA ACTTCCTATG GCCTAATTTC shrew CC----ATGG AAACA---CT ---GCAGCTG ATTTCCTAAG ACCATATTTC rfbat AT----ATGG AAATA---CT ---GCAGCAG ACTTCCTAAG GCCACATTTC cpbat AT----GTGC AAACA---CC ---ATGGCAG ACTTCCTAAG AGCACATTTC cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AA----ATGG AAACA---CT ---GCAGCAG ATTTCCTAAG GCCACATTTC ferret AT----ATGG AAACG---CT ---ACACC-- ACTTCC-AAG GCCACATTTC dog AT----ATGG AAATA---CT ---GCAGCAG ACTTCCTAAG GCCACATTTC pig AT----ATGG AAACA---CA ---ACAGCAG ACTTCCTAAG GCCACATTTC muntjak_indian AT----ATGG AAACACCACA ---GCGGCAG ACTTCCTAAG GCCATATTTC sheep AT----ATGG AAACACCGCA ---GCGGCAG ACTTCCTAAG GCCATATTTC cow AT----ATGG AAACACCACA ---GCGGCAG ACTTCCTAAG GCCATATTTC horse AC----ATGG AAACA---CT ---GCAACAG ACTTCCTAAG GCCACATTTC armadillo ------ATGG GGAAA---CT ---GCAGCAG ATTTCCTAAG ACCACATTTC elephant ---------- ---------- ---------- ---------- ---------- tenrec ------ACAG G--------- ---GCAACAG GCTTCTTAAG GCTTCTTTTC wallaby AC----ATGA ACACA---GG ---GCAGCAG ATTTCCTATG GCCACATTTC monodelphis AC----ATGA ACACA---GT ---GCAACAG ATTTCCTAAG GCCATATTTC opossum AC----ATGA ACACA---GT ---GCAACAG ATTTCCTAAG ACCATATTTC platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTGTGGGAGG GAATTCCTGT GATTA----- ------AATT GAGTAATATG chimp CTGTGGGAGG GAATTCCTGT GATTA----- ------AATT GAGTAATATG gorilla CTGTGGGAGG GAATTCCTGT GATTA----- ------AATT GAATAATATG orangutan CTGTGGGAGG GAATTCCTGT GATTA----- ------AATT GAGTAATATG gibbon CTGTGGGAGG GAATTCCTGT GATTA----- ------AATT GAGTAATATG colobus_monkey CTGTGGGAGG GAATTCCTGT GATTA----- ------AATT GAGAAATACG vervet ---------- ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque CTGTGGGAGG GAATTCCTGT GATTA----- ------AATT GAGAAATATG dusky_titi CTGTGGGA-A GAATTCCTGT AATTA----- ------AATT GAGGAATATG owl_monkey CTGTGGGATG GAATTCCTGT GATTA----- ------AATT GAGTAATATG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CTGTGGGAGA GAATTCCTGT GATTA----- ------AATT GAGTAATATG galago CTGTGGGAGG GAGTTCTTGT GATTA----- ------AATT AAATGATCTA mouse_lemur CTGTGGGAGG GACTTCCTGT GATTA----- ------AATT GAATGATATG lemur CTGTGGGAGG GAATTCCTGT GATTA----- ------AATT GAATGATATG rabbit CTGTGGGAGG G-ATTCCTGT GATTG----- ------AAGT GGATGGTATG st_squirrel CTGTGGGAAG GAATTCCAGT TATGA----- ------AATT GAATGATATG guinea_pig TTGTGGGAGG GAATTCCTGT AATTA----- ------AAAT GAATGATATG rat CTGTGGAAGG GAATTCCTGT GATTA----- ------AATG GAATG--ATG mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTTTGGGAAG GAAGTTCCAT GATTG----- ------AATT AAATGATACA shrew CTATGGGAAG GAATTCCTG- ---------- ---------- ---------- rfbat CTGTAGGAAG AAATTCCTGT GATTA----- ------AATT AAATGATATG cpbat CTGTAGAAGG AAACTCCTGT AATTA----- ------AATC AAATGATATG cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CTGCAGGAAG GAATTCCTGT GATTA----- ------AACT GA---ATACG ferret CTGTGGGAAG GAATTCCTGT GGTTA----- ------AGTT GA---AT--G dog CTGTGGGAAG GAATTCCTGT GATTA----- ------AGTT GA---ATATG pig CTGTAGGAAG GAATTCCTA- ---------- ---------- ---------- muntjak_indian CTGTGAGAAG GAATTCCTG- ---------- ---------- ---------- sheep CTGTGAGAAG GAATTCCCG- ---------- ---------- ---------- cow CTGTGAGAAG GAATTCCTG- ---------- ---------- ---------- horse CTGCAGGAAG GAATTCCTGT GGTTA----- ------AATT GAGGGATATG armadillo CTGTGGGAGA GAATTCCTGT GATTA----- ------AATT GAATGATATA elephant ---------- ---------T GATTA----- ------AGTT GAATTATATG tenrec CTGTGAGAGG GAATTCCAG- ---------- ------AATT GAATTATATA wallaby CCACAGGAGG GAATTACCA- --TTACTCAA TACACCAATG AAATCACAGG monodelphis CTGTAGGATG GAATTCCTG- ---------- ---------- ---------- opossum CTGTAGGAAG GAATTTCTG- --TCACT-AA GAGATCAAT- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTCATTTCA TTCTGTTG-T ATTATTTATT TATCTCTG-- --TTCTAGAG chimp TTTCATTTCA TTCTGTTG-T ATT------- TATCTCTG-- --TTCTAGAG gorilla TTTCATTTCA TTCTGTTG-T ATT------- TATGTCTG-- --TTCTAGAG orangutan TTTCATTTCA TTCTGTTG-T ATT------- TATCTCTG-- --TTCTACAG gibbon TTTCATTTCA TTCTGTTG-T ATT------- TATCTCTG-- --TTCTAGAG colobus_monkey TTTCATTTCA TTCTGTTATT ATT------- TATCTCTG-- --TTCTAGAG vervet --------CA TTCTGTCG-T ATT------- TATCTCTG-- --TTCTAGAG baboon ---------- ---------- ---------- ---------- ---------- macaque TTTCATTTCA TTCTGTCG-T ATT------- TATCTCTG-- --TTCTAGAG dusky_titi TTTCATTTCA TTCTGGTA-T ATT------- CATCTCTG-- --TTCTACAG owl_monkey TTTCATTT-- ---------- ---------- TATCTCTG-- --TTCTACAG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TTTTATTT-- ---------- ---------- GATCTCTG-- --TTCTACAG galago TTTCATTTCA TTCTGTTG-- ---------- TATCTGTG-- --TTCTATAG mouse_lemur TTTCGTTTCA TTCTCTTA-- ---------- TATATCTG-- --TTCTAGAG lemur TTTCATTTCA TTCTGTTG-- ---------- TATGTCTG-- --TTCTAGAG rabbit CTTCA-TTCA TTCTGTTG-- --T------- CATATTAT-- --ATCTTAAT st_squirrel TTTCATATCA TTTTGTCA-- --T------- CAT-CTCT-- --GTCTTAAT guinea_pig TTTTATTTTA TCTT------ ---------- -------T-- --AAATAAAA rat ATTCA-TT-- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TTTCTTTT-- ---------- ---------- CGTCTCTAGT TTTTACTGG- shrew ---------- ---------- ---------- AATCCCTG-- ---TCCTGA- rfbat TTTCATTT-- ---------- ---------- TGTCTCTG-- --TTCCAGAG cpbat TTTTATTT-- ---------- ---------- TATCTCCA-- --CTCCAGA- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TTTCATTTCA CACTGCTG-- --T------- TATCTCTG-- --TTCCAGAG ferret TTTCATTT-- ---------- ---------- TATCTCAG-- --TTCCAGAG dog TTTCATTT-- ---------- ---------- TATCTCTG-- --TTCCAGAG pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- TATCTCTG-- --TTCCAGAG sheep ---------- ---------- ---------- TATCTCTG-- --TTCCAGAC cow ---------- ---------- ---------- TATCTCTG-- --TTCCAGAG horse TTTCATGCCA TTCTGTTG-- --t------- TATCTCTA-- --TTCCAGCG armadillo TTTCACTTCA TTCTGTTG-T ATT------- ------TG-- --TTCTAGAA elephant TTTCATTTCG TTCTGTTG-T CTT------- ------TG-- --TTCTTGAA tenrec TTTCATTTCA TTCTGTTG-T A--------- ------AG-- --TTCTCAAA wallaby TCTC------ ---------- ---------- T-TCTGAA-- --TTCTATAG monodelphis ---------- ---------- ---------- T-TCTGGA-- --TTCTAT-G opossum ---------- ---------- ---------- T-TCTGGA-- --TTCTAT-G platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGGC------ ---------- ---------- ---------- ---------- chimp TGGC------ ---------- ---------- ---------- ---------- gorilla TGGC------ ---------- ---------- ---------- ---------- orangutan TGGC------ ---------- ---------- ---------- ---------- gibbon CAGC------ ---------- ---------- ---------- ---------- colobus_monkey TGGC------ ---------- ---------- ---------- ---------- vervet TGGC------ ---------- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TGGC------ ---------- ---------- ---------- ---------- dusky_titi AGGT------ ---------- ---------- ---------- ---------- owl_monkey TCAT------ ---------- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TCGT------ ---------- ---------- ---------- ---------- galago TGGT------ ---------- ---------- ---------- ---------- mouse_lemur TGGT------ ---------- ---------- ---------- ---------- lemur TGGt------ ---------- ---------- ---------- ---------- rabbit CTATATCTAT ATATACAATA TATAGATAAA ATATACCAAA TTATCTCTGC st_squirrel TTAT------ ---------- ---------- ---------- ---------- guinea_pig TTAT------ ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---T------ ---------- ---------- ---------- ---------- shrew ---A------ ---------- ---------- ---------- ---------- rfbat TGGT------ ---------- ---------- ---------- ---------- cpbat ---T------ ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TAGT------ ---------- ---------- ---------- ---------- ferret TGGT------ ---------- ---------- ---------- ---------- dog TGGT------ ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian TGGT------ ---------- ---------- ---------- ---------- sheep TGGT------ ---------- ---------- ---------- ---------- cow TGGT------ ---------- ---------- ---------- ---------- horse TGGC------ ---------- ---------- ---------- ---------- armadillo TGAT------ ---------- ---------- ---------- ---------- elephant TGAT------ ---------- ---------- ---------- ---------- tenrec TGAT------ ---------- ---------- ---------- ---------- wallaby TGGT------ ---------- ---------- ---------- ---------- monodelphis TGAT------ ---------- ---------- ---------- ---------- opossum TGAT------ ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---------- aaa--aata- -attattttT TG-----CAC ATT-----AA chimp ---------- aaa--aata- -attattttT TG-----CAC ATT-----AA gorilla ---------- aaa--aata- -attattttT TG-----CAC ATT-----AA orangutan ---------- aaa--aata- -attattttT TG-----CAC ATT-----AA gibbon ---------- aaa--aata- -attattttT TG-----CAC ATT-----AA colobus_monkey ---------a aaa--aata- -attattttT TG-----CAC ATT-----AA vervet ---------a aaa--aata- -attattttT TG-----TAC ATT-----AA baboon ---------- ---------- ---------- ---------- ---------- macaque ---------a aaa--aata- -attattttT TG-----CAC ATT-----AA dusky_titi ---------- AAA--AAGA- -ATTATTTTT TGCACattat ttt-----aa owl_monkey ---------- AAA--AATC- -ATTATTTTT TGCACATTAT TTT-----AA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- AAA--AATA- -ATTATTTT- -------TAC ATT-----AA galago ---------A AAA--AAAAT TAT--TTTTT GA-----CTT ATTATTGCAG mouse_lemur ---------A AAA--AATA- -ATTATTTTC GG-----CAC ATTATTGCAG lemur ---------a aaa--aaaat tattattttT GG-----CAC ATTATTGCAG rabbit TCAAAAGTGG CAA--AATA- -AT-ATTTTT TG-----CAC ATTATTGCAA st_squirrel ---------- ---------- -----TTTTT TG-----TAC AATGCTGCAT guinea_pig ---------- ---------- -----CTTCT TG-----CAC AATACTACAA rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- AAA--AATA- -ATCTTT--C TG-----CAC ATAATTGCAA shrew ---------- AAAGCACTG- -ATTTTT--T TT-----CAC ATCACTGT-T rfbat ---------- AAA-AGAGA- -GTTATTCAT TG-----CGC ATCATTGCAA cpbat ---------- AAA-TAATA- -CTTTTT--T TG-----CAC ATCATTGCAA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- AAA--AATA- -ATTATTTTT TG-----TAT ACCATTGGAG ferret ---------- AAA--AATA- -GTTATTTCT TG-----CAC ATTATTGCAA dog ---------- AAA--AATA- -GTTATTTT- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- AAT--AATA- -ATTATTTTT --------AT ATCATTTCAA sheep ---------- AAT--AATA- -ATTATTTTT --------AT ATCATTGCAA cow ---------- AAT--AATA- -ATTATTTTT --------AT ATCATTGCAA horse ---------- GAA--AATA- -ATTATTTTT TG-----CAC ACCATTGCAA armadillo ---------- AAA---ATA- -ATTACTTTT TG-----CAC ATTTTTGCAA elephant ---------- AAA--CATC- -ATTACTTTT TG-----TAC ATTATTGCAA tenrec ---------- AAA--AATC- -AGTGTTTTT TG-----CAC ATTACCTCAA wallaby ---------- TAA--AATA- -GTTATTCT- -------TCT GATGTTGAAA monodelphis ---------- TAA--AATG- -ATCCTTCT- -------TCA GATGCTACAA opossum ---------- TAA--AATG- -ATTCTTCT- -------TGA GATATTAAAA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAGTAAA--- ----ATTTAA TAAAA---A- ---------- -CATTCAAT- chimp CAGTAAA--- ----ATTTAA TAAAA---A- ---------- -CATTCAAT- gorilla CAGTAAA--- ----ATTTAA TAAAA---A- ---------- -CATTCAAT- orangutan CAGTAAA--- ----ATTTAA TAAAA---A- ---------- -CATTCAAT- gibbon CAGTAAA--- ----ATTTAA TAAAA---A- ---------- -CATTCAAT- colobus_monkey CAGTAAA--- ----ATTTAA TAAAA---A- ---------- -CATTCAAT- vervet CAGTAAA--- ----ATTTAA TAAAA---A- ---------- -CATTCAAT- baboon ---------- ---------- ---------- ---------- ---------- macaque CAGTAAA--- ----ATTTAA TAACA---A- ---------- -CATTCAAT- dusky_titi tagtaaa--- ----atataa taaaa---a- ---------- -CACTCTAT- owl_monkey TACTAAA--- ----ATGTAA TAAAA---A- ---------- -CACTCTAT- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TAGTGAA--- ----ATGTAA TAAAA---A- ---------- -CACTCTAT- galago CAGCAAA--- ----ATTTAA TAAAA---A- ---------- -CATCCAAT- mouse_lemur CAGTAAA--- ----ATTTAA TAAAA---A- ---------- -TATCCAAT- lemur CCATAAA--- ----ATTTAA TAAAA---A- ---------- -CATCCAAT- rabbit CAGTAAA--- ----ATTTAA TAAAA---C- ---------- -ATTC-AGT- st_squirrel CAGTGAA--- ----CTTCAA TAAAA---A- ---------- -CATCTAAT- guinea_pig TAGCAAA--- ----ATTCAA TA-------- ---------- ---TCCAAT- rat ---------- ---------- ---------- ---------- ---TCCAAT- mouse ---------- ---------- ---------- ---------- ---------- hedgehog Caataat--- ----tttaat aaaaa---ta ---------- ---------- shrew CATGAAA--- ----TTTAAC AAAAG---CA ---------- ---TAAAAT- rfbat CAATAAA--- ----CTATAA TAAAA---CA ---------- ---TTCAAT- cpbat CAATAAA--- ----ACTTAA TAAAG---AA AAAAAACTGA ATATCCAAT- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard Caataaa--- ----atttaa taaaa---aa ---------a aCATTCAAT- ferret CAATAGA--- ----ATTTAA TAAAA---A- ---------- -CACCCCAG- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian Caataaa--- ----atttaa taa------- ---------- ---TCCAAT- sheep CAACAAA--- ----ATT--- CAA------- ---------- ---TCCAAT- cow CAACAAA--- ----ATTTAA TAA------- ---------- ---TCCAAT- horse CACTAAA--- ----ATTTAA TAAAA---A- ---------- -CATCAAAT- armadillo CAA-AAA--- ----AGTTAA TAAAA---A- ---------- ---TCCAAT- elephant Caataaa--- ----atttaa taaaa---a- ---------- -taTCCAGT- tenrec CAATAGA--- ----ATTTAA TAAGA---A- ---------- -CATCCATT- wallaby AACTAAACTG AC--ACTTAA AAAAA--CA- ---------- -CA---AAC- monodelphis AACTAAACTG ACTTATGTAC AAAAACTCA- ---------- -TA---AACA opossum AATTAAACTG ACTTATTTAT AAAAATCCA- ---------- -CA---AAC- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---AAAGA-- TGCATTTCCC TGATTACCAG AC-TTATAAA TAGGTAC-TT chimp ---AAAGA-- TGCATTTCCC TGATTACCAG AC-TTATAAA TAGGTAC-TT gorilla ---AAAGA-- TGCATTTCCC TGATTACCAG AC-TTATAAA TAGGTAC-TT orangutan ---AAAGA-- TGTATTTCCC TTATTACCAG AC-TCATAAA TAGGTAC-TT gibbon ---AAAGA-- TGTATTTCCC TGATTACCAG AC-TTGTAAA TAGGTAC-TT colobus_monkey ---AAAAA-- TATATTTCCC TGATTACCAG AC-TTATAAA TAGGTAC-TT vervet ---AAAAA-- TGTATTTCCC TGATTACCAG AC-TTATAAA TAGGTAC-TT baboon ---------- ---------- ---------- ---------- ---------- macaque ---AAAAA-- TGTATTTCCC TGATTACCAG AC-TTATAAA TAGGTAC-TT dusky_titi ---ACAGA-- TGTATTTCCC TGATTACCAG AC-TTATAAA TAGGTAC-TT owl_monkey ---ACAGA-- TGTATTTCCC TGACTACCAG AC-TTATAAA TAGGTAC-TT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---ACAGA-- TGTATTTCCC TGATTACCAG AC-TTATAAA TAGGAAC-TT galago ---AAAGA-- TTTACGCCCC TGATTACGAG GC-TTATAAA TAGGTAC-TC mouse_lemur ---AAAGA-- TGTATCTCCC TGATTATCAG GC-TTATAAA TAGTTAC-TC lemur ---AAAGA-- CGTACCTCTC TGATTATCAG GC-TTATAAA TAGTTAC-TC rabbit ---AAAAA-- TGCATCTCTC TGATTATAAA AC-TTACAAA TAGATACTTT st_squirrel ---AAAGA-- TGTATATCTC TGACTTTCAG AC-TTATAAA TAGGTAC-TT guinea_pig ---AGAGA-- TATATCTCCC TGATTATCAG AC-TTATAAA CATGTAC-TT rat ---AAAGA-- TGTATCTTCT TGATTATCAG AC-TTATAAA TAGGTCA-TT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- -C-TTATAAA TAGGTAT--- shrew ---AGAGA-- TTTATCT-AC TGATAATCTG AT-TTATAAA TAGGTAC-TT rfbat ---AAAGT-- TGTATTTCCC TGATTATC-G AC-TTATAAA TAGGTAC-TT cpbat ---AAAGC-- TGTATCTCCC TGATTATCTG AG-TTATAAA TAGGAAC-TT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---AAAGA-- TATATCTTTT TAATTATCCA AC-TTATAAA TAGGTAC-TT ferret ---AAAGA-- TGTATCTCCT TGATTATTCA AC-TTATAAA TAGGTAC-TT dog ---------- ---------- ---------- -C-TTATAAA TAGGTAC-TT pig ---------- ---------- ---------- -CTTTATAAA TAGGTAC-TT muntjak_indian ---AAAGA-- T-TATCTCCC TGATTATCTG AC-TTATAAA TAGGTAC-TT sheep ---AAAGA-- T-TATCTCCC TGATTATCTG AC-TTATAAA TAGGTAC-TT cow ---AATGA-- T-TATCTCCC TGATTATCTG AC-TTATAAA TAGGTAC-TT horse ---AAAGATG T-TCTCTCCC TGATTATATG AC-TTATAAA TAGGTAC-TT armadillo ---GAAGA-- TGTATCTCCC TGATTATCAG AC-TTATAAA TAGGTTC-CT elephant ---AAAGA-- TATATCTCCC TGATTATCTG AC-TTATAAA TAGGTAC-TT tenrec ---AAAGA-- TTGAACTCCC TGATTATCT- AC-TTATAAC TAAGTAC-TT wallaby ---ACAAA-- T--GTCTTTC TGATAACCTG -C-TTATAAA TAGGCAT-TT monodelphis CAAACAAA-- T--ATCTTTA TGATAACCTG AC-TTATA-- --GTTAT-TT opossum ---TCAAA-- T--ATCTTTC TGATAACGTG GC-TTATAAA TAGGTAT-TT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- -G-GGGTAAT TAG-TAT-TT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGAGTTATTT AATTGGCTTT CATCTTTTCA GTCACACTTT CT-------- chimp TGAGTTATTT AATTGGCTTT CATCTTTTCA GTCACACTTT CT-------- gorilla TGAGTTATTT AATTGGCTTT CATCTTTTCA GTCACACTTT CT-------- orangutan TGAGTTATTT AATTGGCTTT CATCTTTTCA GTCACACTTT CT-------- gibbon TGAGTGATTT AATTGGCTGT CATCTTTTCA GTCACACTTT CT-------- colobus_monkey TGAGTTATTT AATTGGCTTT CATCTTTTCA GTCACACT-- -T-------- vervet TGAGTTATTT AATTGGCTTT CATCTTTTCA GTCACACTTT CT-------- baboon ---------- ---------- ---------- ---------- ---------- macaque TGAGTTTTTA AATTGGCTTT CATCTTTTCA GTCACACT-- -T-------- dusky_titi TGAGGTATTT AATTGGCTTC CATCTTTTCA GTCACACTGT CT-------- owl_monkey TGAGGTATTT AATTGGCTTT CATCTTTTCA GTCACACTTT CT-------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TGAGGTGTTT AATTGGCTTT CATCTTTTCA GTCACACTTT CT-------- galago TGAGCGATTT AATTGGCTTG CATCCTTTCT GTCACACTTT CT-------- mouse_lemur TGAGTTATTT AATTGGCTTT AATCTTTTCC TTCACACTTT CT-------- lemur TGAGTTATTT AATTGGCTTT AATCTTTTCC GTCACACTTT CT-------- rabbit TGAGTTATTT AATTGGCGTT TATCTTTTAA GTCACACTTT CT-------- st_squirrel TGAGTTATTT AATTGGCTTT CATCTTTTAA GTCACACTTT CT-------- guinea_pig TGAGTTATTT AACTGGCTTT TGTCTTTCAA GCCTCACTGT CT-------- rat AGAGTTACTT AATTGTCCTT TGTCTTTTAA ATCACACTTT CT-------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ----TTATTT AATTGGCTTT TATCTTTTAA GTTACACGCT CT-------- shrew TGAGTTATTT AATTGAGTCT CATCTTTTTA --------TT TTCTTTCTTT rfbat TGAGTTATTT AATTGGCTT- --TCTTTTAA GTCACACTTT CT-------- cpbat TGAGTTA--- -ATTGGCTTT CATCTTTTAA GTCACACTTT CT-------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TGAGTTATTT AATTGGCTTG CATCTTTTAA GTCACACTTT CT-------- ferret TGAGTTGTTT AACTGGCTTG CATCTTTTAA GTCACACTTT CT-------- dog TGAGTTATTT AATTGGCTTG CATCTTTTAA GTCACACTTT CT-------- pig TGAGTTATTT AATTGGCTTT CA-CTTTTAA GTCACACTTT CT-------- muntjak_indian TGAGTTATTT AATTGGCTTC CACCTTTTCA GTCACACTTT CT-------- sheep TGAGTTATTT AATTGGCTTT CACCTTTTCA GTCACACTTT CT-------- cow TGAGTTATTT AATTGGCTTT CACCTTTTCA GTCACACTTT CT-------- horse TGAGTTATTT AATTGGCTTT CGTTTTCTAA GCCACACTTT CT-------- armadillo TGAGTTATTT AATTGGCTTT CATCTATAAA GTCACACTTT CT-------- elephant TGAGTTATTT AATTGGCTTT CATCTTCTAA GTCACACTTT CT-------- tenrec TGAGTTATTT AATTGGCTTG CATCTTCTAA GTCCCACTTT CT-------- wallaby TCAGTTATTG CCTTAGTTTG CACGTTTTTG CTTCCACTTT CT-------- monodelphis TCAGTCATTT CATTAGTTTT CATCGTTTTA CTTCCACTTT CT-------- opossum TTAGTCATTT CATTAGTTTT CATT-TTTTA CTTCCACTTT CT-------- platypus ---------- AGCTTGCTTT CAGTCTTTGA CTCTCA--CT CT-------- chicken AAATTTATTA AACTGGCTTT CAGCTGTGTA TTCATTCTTG TC-------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC chimp -------TT- GAGATTCTCT GAGTAAACTA AAATAAGAGC TGGCATTGCC gorilla -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC orangutan -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC gibbon -------TT- GAGATTCTCT GAGTAATTTA AAATAAGAGC TGGCATTGCC colobus_monkey -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC vervet -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC baboon ---------- ---------- ---------- ---------- ---------- macaque -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC dusky_titi -------TT- GAGATTCTCG GAGTAATCTA AAATAAGAGC TGGCATTGCC owl_monkey -------TT- GAGATTCTGG GAATAATCTA AAATAAGAGC TGGTATTGCC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset -------TT- GAGATTCTGG GAGTAATCTA AAATAAGAGC TAGCATTGCC galago -------TT- AAGATTCTCT GAGTAATCTC AAATAAGAGC TGGCATTGCC mouse_lemur -------TT- AAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC lemur -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC rabbit -------TA- GGGATCCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC st_squirrel -------TT- GGGATTCTAT GAGTAATATA AAATAAGAGC TGGCATTGCC guinea_pig -------TT- GAGATTCTGT GAGTAATCTA AAATAAGAGC TGGCACTGCC rat -------TT- GAGATTCTGA GAGCAATCTA AAATAAGAGC TGGCATTGCC mouse ---------- ---------- ---------- ---------- ---------- hedgehog -------TT- CAGATTCTCT CAGTAATCTA AAATAGGAAC TGGCATTGCC shrew TTAATTTTT- GAGATTCTCT GAGTAATCTA AAATAGGAAC TGGCATTGCC rfbat -------TT- GAGATTC--- ---GAACCTG AAATGAGGGC TGGCATTGCC cpbat -------TT- GAGATCCTGT GAGTAATCTA AAATAAGAGC TGGTACTGCC cat ---------- ---------- ---------- ---------- ---------- clouded_leopard -------CT- GAGATGCTCT GAGTAATCTA AAATAACAGC TGGCATTGCC ferret -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC dog -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC pig -------TT- GAGATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC muntjak_indian -------TT- GACATTCTCT GACTAATCTA AAATAGGAGC TGGCATTGCC sheep -------TT- GACATTCTCT GAGTAATCTA AAATAAGAGC TGGCATTGCC cow -------TT- GACATTCTCT GAGGAATCTA AAATAAGGGC TGGCATTGCC horse -------TC- GAGATTCTCT GAGTAACCCA ACATAAGAGC TGGCATTGCC armadillo -------TT- GGGATTCTCT GACTAATCTA AAATAAGAGC TGGCATTGCC elephant -------TT- GAGATTCTCT GAGTAA-CTA AAATAAGAGC TGGCATTGCC tenrec -------TT- GAGACTCTCT GAGTAG-CTT CACTAAGAGC TGGCATTGCC wallaby -------TTG GAGAATC--T GAGTAATCTA AAATGAGATT TGGCATTGCC monodelphis -------TTG GAGAATC--T GAGTAATCTA AAATGAGATT TGGCATTGCC opossum -------TTG GAGAATC--T GAGTAATCTA AAATGAGATT TGGCATTGCC platypus -------AT- GGGAGTGTCT GAGCAATTTA AAATAGGACT TGGCATTGCC chicken -------TT- GGGAATCTCT TACTAAACTA AAATAGGACT TGGCGTTGCC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGCTGTTGCA CATTTACCAG CCCAGTTACA -TTTGTTATA AAGGGC-CAG chimp AGCTGTTGCA CATTTACCAG CCCAGTTACA -TTTGTTATA AAGGGC-CAG gorilla AGCTGTTGCA CATTTACCAG CCCAGTTACA -TTTGTTATA AAGGGC-CAG orangutan AGCTGTTGCA CATTTACCAG CCCAGTTACA -TTTGTTATA AAGGGC-CAG gibbon AGCTGTTGCA CATTTACCAG CCCAGTTACA -TTTGTTATA AAGGGC-CAG colobus_monkey AGCTGTTGCA CATTTACCAG CCCAGTTACA -TTT---ATA AAGGGC-CAG vervet AGCTGTTGCA CATTTACCAG CCCAGTTACA -TTTGTTATA AAGGGC-CAG baboon ---------- ---------- ---------- ---------- ---------- macaque AGCTGTTGCA CATTTACCAG CCCAGTTACA -TTTGTTATA AAGGGC-CAG dusky_titi AGCTGTTACA CATTTATCAG CCCAGCTACA -TTTGTTATA AAGGGC-CAA owl_monkey AGCTGTTGCA CATTTATCAG CCCAGCTACA -TTTGTTATA AAAGGC-CAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AGCTGTTACA CATTTATCAG CCCAGCTACA -TTTGTTACA AAGGGC-CAA galago AGCTGTTACA CATTTACCAG CCCAGCTACA -TTTGTTATA AAGGGC-CAA mouse_lemur AGCTGTTACA CATTTACCAG CCCAGCTACA -TTTGTTATA AAAGGC-CAA lemur AGCTGTTACA CATTTACCAG CCCAGCTACA -TTTGTTAAA AAGGGC-CAA rabbit AGCTGTTACA CATTTACCAG TCCAGGGACA -TGTGTTCTA AAAGAC-CAA st_squirrel AGCTGTTGCA CATTTACCAG CCCAGCTACA -TTTGTTACA AAGGGC-CAC guinea_pig AGCTGTTACG CATTTATCAG CCCAGCTACA TTTTGTTATA AAGGGC-CAA rat AGCTGTTACA CATTTACCAA CCCAGCTACA -TTTGTTATA AAGGAC-CAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog AGCTGTTACA CATTTACCC- TCCACCCA-- ----CTTATA AAGAGC-TAC shrew AGCTGTTACA CATTTACCCG CCCAGCTACA -TT-GTTATA AAGGCC-TAC rfbat AGCTGTTACA CATTTATCTG TCCAGCTCCA -TTTGTTACA AAGAGC-GAC cpbat AGATGTTACA CATTTACCAG CTCAGCTACA -TTTGTTATA AAGGGC-CAC cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AGCTGTTACA AATTTACCAG CCCAGCTACA -TTTGTTATA AAGGGC-CAC ferret GGCTGTTACA CATTTACCAG CCCAGCTACA --TTGTTATA AAGGGC-CAC dog AGCTGTTACA CATTTACCAG CCCAGCTACA -TTTGTTATA AAGGGC-CAC pig AGCTGTTACA CATTTACCAG CCCAGCTACA -TTT-TTATA AAGGGC-CAC muntjak_indian AGCTGTTGCA CATTTACCAG CCCAGCTACA -TTTGTTATA AAGGGC-CAC sheep AGCTGTTACA CATTTACCAG CCCAGCTACA -TTTGTTATA AAGGGC-CAC cow AGCTGTTACA CTTTTACCAG CCCAGCTACA -TTTGTTATA AAGGGC-CAC horse AGCTGTTACA CATTTACCAG CCCAGCTACA -TTTGTTATA AAGGGC-CAC armadillo AGCTGTTGCA CATTTACCAG CCCAGCTGCA -TTCGTTATA AAGGGC-CGC elephant AGCTGTTACA CATTCACCAG CCCGGTTACA -TTTGTTATA AAGGGC-CAC tenrec AGCTGTCCCA CATTCTCCAG CCC-GCGGCA -TTCGTTATA AAGGGC-CAC wallaby AGCTGTTACA CATTTACCAG CTTAACTACA -TTTATCATA AAGGGA-AAC monodelphis AGCTGTTACA CATTTACCAG CCTAGCTACA -TTTATCATA AAGGGA-AAC opossum AGCTGTTACA CATTTACCAG CCTAGCTACA -TTTATCATA AAGGGA-AAC platypus AGCTGCTCCA CATTTACCAA CCTAGCTACG -TTTATCATA AAGGGC-CAC chicken AGCTGTTGTA CATTTACCAG CTTAACTACA -TTTACTATG AAGGATACAC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TATGAACCTT ATTTGGATTA AAATTTGTAC CATT--CACA ATTTCACCTT chimp TATGAACCTT ATTTGGATTA AAATTTGTAC CATT--CACA ATTTCACCTT gorilla TATGAACCTT ATTTGGATTA AAATTTGTAC CATT--CACA ATTTCACCTT orangutan TATGAACCTT ATTTGGATTA AAATTTGTAC CATT--CACA ATTTCACCTT gibbon TATGAACCTT ATTTGGATTA AAATTTGTAC CATT--CACT ATTTCACCTT colobus_monkey TATGAACCTT ATTTGGATTA AAATTCGTAC CATT--CACA GTTTAACCTT vervet TATGAACCTT ATTTGGATTA AAATTCGTAC CATT--CACA ATCTCACCTT baboon ---------- ---------- ---------- ---------- ---------- macaque TATGAACCTT ATTTGGATTA AAATTCGTAC CATT--CACA ATTTCACCTT dusky_titi TATTAACCTT ATTTGGATTA AAATTTATAC CATT--CACA ATTTCAACTT owl_monkey TATTAACCTT ATTTGGATTA AAATTTATAC CATT--CACA ATTTCACCTT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TATTAACCTT ATTTGGATTA AAATTTATAG CATT--CACA ATTTCACCTT galago CCTTAACCTT ATTTGGATTA AAATTTATAC CATT--CACA ATTTCCTCTT mouse_lemur TCTTAACCTT ATTTGGGTTA AAATTTATAC CATT--CATG ATTTCACCTT lemur TCTTAACCTT ATTTGGGTTA AAATTTATCC CATT--CATG ATTTCACATT rabbit TCTTGACCTT ATTTGGATTA AAACTTATAG CAGT--CACA ATTTCACCTT st_squirrel TCTTACCCTT ATTTGGATTA AAGTTTATAC CATT--CATA CTTTCAAATT guinea_pig TCTTAACCTT ATTTGGATTA AAATTTATAC CATCCACACA ATTTCACCTT rat TCTTAACCTT ATTTGGATTA AATTTTATAC CATT--CACA ATTTCACTTG mouse ---------- ---------- ---------- ---------- ---------- hedgehog TCTTAACCTT ATTTGGATTA AAACTCATGC CATA--CACA ---------- shrew TCTTAACCTT ATTTGGAGTA AAATTTATAC CATT--CATA ---------- rfbat TCTTAACCTT ATTTGGATTA AATTTTATAT CATT--CACA ATTTCAGCTT cpbat TCTTAACCTT ATTTGGATTG AAATT-ATAC CACT--CACA ATTTCAACTT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TCTTAACCTT ATTTGGATTA AAATTTATGC CATT--CACA ATTTCACCTT ferret TCTTAACCTT ATTTGGATTA AAATTTTTGC CATT--CACA ATTTCACCTT dog TCTTAACCTT ATTTGGATTA AAATTTATGC CATT--CACA ATTTCACCTT pig TTTTAACCTT ATTTGGATTA AAATTTATAC CATT--CACA -TTTCACCCT muntjak_indian TCCTAACCTT ATTTGGATTA AAATTTACAC CATT--CACA ATTTCACTTC sheep TCTTAACCTT ATTTGGATTA AAATTTATAC CATT--CACA ATTTCACTTC cow TCTTAACCTT ATTTGGATTA AAATTTATAC CATT--CACA ATTTCACTTC horse TCTTAACCTT ATTTGGATTA AAATTTGTAC CATT--CACA ACTTCACCTT armadillo TCGTAACCTT ATTTGGCTTA AAATGTATAC CGTT--CACA ATTTCACCTT elephant TCTTAACCTT ATTTGGATTA AAATTTATAC CATT--CACA ATTTCACTTC tenrec TCTTCACCTT ATTTGGATTA AAATTCATAC CATT--CACA ---------- wallaby TCTTAACCTT ATTTGGATTA AAATTTACAC CATT--CACA ---------- monodelphis TCTTAACCTT ATTTGGATTA AAACTTACAC CATT--CACA ---------- opossum TCTTAACCTT ATTTGGATTA AAATTTACAC CATT--CACA ---------- platypus TCTTAACCTT ATTTGGATTA AAATGTTCAC CATT--CATA ---------- chicken TCTTAGCCTT ATTTGGATTA AACTTTACAC CGTG--C-CA --------TT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAAA--TGTA ----A-AAAG AGG--AA-AT TCTACCACAa ggaaaagctt chimp CAAA--TGTA AAGTA-AAAG AGG--AA-AT TCTACCACAa ggaaaagctt gorilla CAAA--TGTA AAGTA-AAAG AGG--AA-AT TCTACCACAa ggaaaagctt orangutan CAAA--TGTA AAGTA-AAAG AGG--AA-AT TCTACCACAa ggaaaagctt gibbon CAAA--TATA AAGTA-AAAG AGG--AA-AT TCTACCACAa ggaaaggctt colobus_monkey CAAA--ATTA AAGTA-AAAG AGG--AA-AT TCTACCACAa ggaaaagctt vervet CAAA--TATA AAGTA-AAAG AGG--AA-AT TCTACCACAa ggaaaagctt baboon ---------- ---------- ---------- ---------- ---------- macaque CAAA--TATA AAGTA-AAAG AGG--AA-AT TCTACCACAa ggaaaagctt dusky_titi CAAA--TATA AAGTA-AAAG AAG--AA-AT TCTACCACAa ggaaaagctt owl_monkey CAAA--TATA AAGTA-AAAG AGG--AA-AT TCTACCACAa ggaaaagctt squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CAAA--TAT- -AGTA-AATG AGG--AA-AT TCTACCACAa ggaaaagctt galago CAAA--TATA AAGTG-AAGG ATAATAA-AA TCTGCCTCA- ---------- mouse_lemur CAAA--TATA AAGTT-AAAG AGA--AA-AT TCTACCACAa agaaaagctt lemur CAAA--CATA AAGTT-AGAG AGA--AA-AT TCTACCACAa gaagaagctt rabbit CAAA--TGTA GAGTA-AA-- AGA--AA-AT TCTACCACAA GGA-AAGTTT st_squirrel CAAA--CATA AAGTA-AAAG AGA--AA-GA GGAACA---- ---------- guinea_pig CAAA--TATA AAGTA-TAAG AGA--AA-AT TCTACA---- ---------- rat CAAA--TGTA AAAT------ AAA--AA-AA CCTACA---- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------A GAAAAAGAAA shrew ---------- ---------- ---------- ---------A TGAAA--AAT rfbat TAAA--TATT AAGTA-AAA- -GA--AA-AT TCTAGCACAa gaaacagctt cpbat TGAA--TATA AGGTA-AAAA AGA--AA-AT TCTAGCACAA GAAAAAGCTT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CAAA--TAT- ------AAAG AGA--AA-A- ---------c ggaaaagctt ferret CAAA--TATA AAGTA-AAAG AGA--AA-A- ---------a ggaaaagctt dog CAAA--TATA AAGCA-AAAG AGA--AA-A- ---------a ggaaaggctt pig C-AA--TATA AAGTA-AAAA AGA--AA-A- ---------- ---------- muntjak_indian C-AA--TATA AAGTA-AAAA -----AA-T- ---------A GGAAAAACTT sheep T-AA--TCTA AAGTA-AAAA --T--AA-A- ---------A GGAAAAGCTT cow C-AA--TATA AAGTA-AAAA -----AA-A- ---------A GGAAAAACTT horse CAAA--TATA AAATA-AAAG AGA--AA-A- ---------a ggaaaagctt armadillo CAAA--TATA AAA-A-AAAA GAA--AA-AT TCTACCACA- ---------- elephant CAAA--AACA AAATA-AAAA GAA--AA-AT TCTATCACAa ggaaaagttt tenrec ------AATA AAATA-CAAT GAA--AA-AT TCGATCACAA GGAAAAGCAT wallaby ------tata ct-ta----- ---------- ---------- ---------- monodelphis ------tata ttgta----- ---------- ---------- ---------- opossum ------tata ctgta----- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken CAAAACTATG GACTCAAAAG AGA--GTT-T CCCACCCAG- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human aataaatatt tagg-gaaat ttttttattt ---tt-ctat ttacaaaaat chimp aataaatatt tAGg-gaaA- TTTTTTATTT ---TT-CTAT TTACAAAAAT gorilla aataaatatt tAGg-gaaat ttttttattt ---tt-ctat ttacaaaaat orangutan aataaatatt tagg-gaa-- TTTTTTATTT ---TT-CTAT TTACAAAAAT gibbon aataaatatt tagg-gaaAT CTTTTTATTT ---TT-CTAT TTACAAAAAT colobus_monkey aataaatatt tagg-gaaat ttttttattt ---tt-ctat ttacaaaaat vervet aataaatatt tagg-gaaat ttttttattt ---tt-ctat ttacaaaaat baboon ---------- ---------- ---------- ---------- ---------- macaque aataaatatt tagg-gaaat ttttttattt ---tt-ctat ttacaaaaat dusky_titi aataaatatt tagg-gaaA- TTTTTTATTT ---TT-CTAT TTACAAAAGT owl_monkey aataaatact tagg----A- TTTTTTATTT ---TT-CTAT TTACAAAAAT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset aataaatatt tagg----a- ttttttattt ---tt-ctat ttacaaaaat galago ---------- --------A- TTTTTTATAC ---TT-CTAT TTTTAAACAT mouse_lemur aataaatatt tggg-gaa-- ttttaaattt ---tt-ctat ttttaaaaat lemur aataaatatt tagg-gaa-- ---------- ---------- ---------- rabbit AATAAATATT Tagg-gaa-- ---------- ---------- ---------- st_squirrel ---------- --------TT TAAATCATTT TCATT----- ---------- guinea_pig ---------- --------TT TAATGTGTTT ---CT----- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CCTTAATATT TATGCAAA-- ---------- ---------- ---------- shrew CTTAAATATT TCTG-GAA-- ---------- ---------- ---------- rfbat aataaatagt TACA-GAA-- ---------- ---------- ---------- cpbat AGTAAATATT TATG-GCA-- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard gataaatatt tgtg-gaa-- ---------- ---------- ---------- ferret aat-aatatt tatg-gaA-- ---------- ---------- ---------- dog a-t-aatatt tatg-gaa-- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian AATAAATATT TATG-AAA-- ---------- ---------- ---------- sheep AATAAATA-T TATT-AAA-- ---------- ---------- ---------- cow AATAAATATT TATG-AAA-- ---------- ---------- ---------- horse aataaatatt tatg-gaa-- ---------- ---------- ---------- armadillo ---------- --------TT CT-TTTATGT ---TTTCTAT TTTTAAAAAT elephant aataaatatt catg-gaATA TT-TTTTTTC ---TTTTTGT TTTCAAAAAT tenrec GATAAATAAT CATG-GAATC CT-TTTTGTT ---TTTTTG- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human aaa------- ---------- ---------- GCATGCTTAC TATATGAAAA chimp AAA------- ---------- ---------- GCATGCTTAT TATATGAAAA gorilla aaa------- ---------- ---------- GCATGCTTAT TATATGAAAA orangutan AAA------- ---------- ---------- GCATGCTTAT TATATGAAAA gibbon AAA------- ---------- ---------- GCATGCTTAT TATATGAAAA colobus_monkey taa------- ---------- ---------- GCATGCTTAT TATATAAAAA vervet taa------- ---------- ---------- GCATGCTTAT TATATAAAAA baboon ---------- ---------- ---------- ---------- ---------- macaque taa------- ---------- ---------- GCATGCTTAT TATATCAAAA dusky_titi AAA------- ---------- ---------- GCATGCTTAT TACATAAAAA owl_monkey AAA------- ---------- ---------- GCATGCTTAT TACATAAAAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset aaa------- ---------- ---------- GCATGCTTAT TACATAAAAA galago AAAAATTGTA TTTCATAAAA ATTCTACTCG AT---CTTAT TTCATAAAAT mouse_lemur ata------- ---------- ---------- GC---CTTAT TTCATAAAAA lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo AAG------- ---------- ---------- GCATGCTTAT TAAATTAAAA elephant AAA------- ---------- ---------- ACATGCTTA- TACATATAAA tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human T-TCTACCCA TCTTCAAGTC CCATCTCATG TCCTACTAAA TCCAT----A chimp T-TCTACCCA TCTTCAAGTC CCATCTCATG TCCTACTAAA TCCAT----A gorilla T-TCTACCCA TCTTCAAGTC CCATCTCATG TCCTACTAAA TCCAT----A orangutan T-TCTACCCA TCTTCAAGTC CCATCTCATG TCCTACTAAA TCCAT----A gibbon T-TCTACCCA TCTTCAAGTC CCATCTCATG TCCTATTAAA TTCAT----A colobus_monkey T-TCTACCCA TCTCCAAGTC CCATCTGATG TCCTACCAAA TCCAT----A vervet T-TCTACCCA TCTCCAAGTC CCATCTCATG TCCTACTAAA TCCAT----A baboon ---------- ---------- ---------- ---------- ---------- macaque T-TCTACCCA TCTCCAAGTC CCATCTCATG TCCTACTAAA TCCAT----A dusky_titi CATCTACCCA TCTTCAAGTC CCATCTCATG TCCCACTAAA TCCATCATAA owl_monkey CATCTACCCA TCTTCAAGTC CCATCTCATG TCCCATTAAA TCCAT----A squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CATTTACCCA TCTTCAAGTC CCATCTCATG TCCCACTAAA TCCAT---AA galago T-TCTACCCA TCTTCAAGTC CCATCTCATG TCCTGCTAAA CTCAT---AA mouse_lemur T-TTTACCCA TCTTCTAGTC CCATCTCATG TCCCATTAAA CCCAT---AA lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat ---------- ---------- ---------- ---------- ---------A mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo T-TCTATCTG TGTTTAAGTC CCATACCAAA TTCCACTAAC TCC--ATTAA elephant T-TCTACCCA TCTTTAAGTC CCATTCTAAG TCCCACTAAC TCC--ATTAA tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human A--AAATT-- -ATAGGCAAT TCTATTTC-- --------TC CTTATTCCCT chimp A--AAATT-- -ATAGGCAAT TCTATTTC-- --------TC CTTATTCCCT gorilla A--AAATT-- -ATAGGCAAT TCTATTTC-- --------TC CTTATTCCCT orangutan A--AAATT-- -ATAGGCAAT TCTATTTC-- --------TC CTTATTCCCT gibbon A--AAATT-- -ATAGGCAAT TCTATTTC-- --------TC CTTATTCCCT colobus_monkey A--AAATT-- -GTAGGCAAT TCTATTTC-- --------TC CTTATTTCCT vervet A--AAATT-- -ATAGGCAAT TCTATTTC-- --------TC CTTATTTCAT baboon ---------- ---------- ---------- ---------- ---------- macaque A--AAATT-- -GTAGGCAAT TCTATTTC-- --------TC CTTATTTCCT dusky_titi A--AAATT-- -ATAGGCAAT TCTAAATTGG ATTCTAAATT CTGATTTCCT owl_monkey A--AAATT-- -ATAGGCAAT TCTAAATTGG ATTCTAAATT CTGATTTCCT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset A--AAATT-- -ATAGGCAAT TCTAAATTGG ATTCTAAATT CTGATATCCT galago A--AAATT-- -ATACGTAAT TTCATTTC-- --------TT CTGATTTTCT mouse_lemur A--GAATT-- -ATAGGCAAT TCCATTTC-- --------TT CTGATTTTCT lemur ---------- ---------- ---------- ---------- ---------- rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ---------- ---------- ---------- ---------- ---------- rat T--AAACT-- -ACCAGGTAT TCTTTTTC-- --------TA ATTATTAC-- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo A--AAATT-- -ATAGACAAT TCCGTCCC-- --------TT CTGATTTCCT elephant AATAAATCTA TATAGACAAT TCCATTCC-- --------TT CTGATTTTCT tenrec ---------- -ATAGACAAT TTCATTTC-- --------TT CTAATTTCCT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTCT-CTAA ATTCTTGaat aaat-tataa aa-----tTT TTGAAACTCA chimp TTTCT-Ctaa atttttgaat aaat-tataa aa-----tTT TTGAAACTCA gorilla TTTCT-CTAA ATTCTTGaat aaat-tataa aa-----tTT TTGAAACTCA orangutan TTTCT-CTAA ATTCTTCaat aaat-tataa aa-----tTT TTGAAACTCA gibbon TTTCT-CTAA ATTCTTGaat aaat-tataa aa-----tTT TTGAAACTCA colobus_monkey TTTCT-CTAA ATTCTTGAAT AAAT-TACAA AA-----TTT TTGAAACTCA vervet TTTCT-CTAA ATTCTTGAAT AAAT-TACAA AA-----TTT TTGAAACTCA baboon ---------- ---------- ---------- ---------- ---------- macaque TTTCT-CTAA ATTCTTGAAT AAAT-TACAA AA-----TTT TTGAAACTCA dusky_titi TTTCT-CTAA ATTCTTGGAG AAAT-TATAA AA-----TTT TTGAAACTTA owl_monkey TTTCT-CTAA ATTCTTGGAG AAAT-TATAA AA-----TTT TTGAAACTCA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ATTCT-CTAA ATTCTTGGAG AAAC-TATAA AA-----TTT TCGAAACTCA galago TTTCT-CTAG ATTTTTGAAG AAAT-TATAA AA-----TTC ATGAAATTCA mouse_lemur TTTCT-CTAA ATTCTTGAGG AAAT-TATAA AA-----TTC TTGAAACTCA lemur ---------- ---------- ---------- --------TC TTGAAACTCA rabbit ---------- ---------- ---------- ---------- -TGAAACTAG st_squirrel ---------- ---------- ---------- --------TC TTGAAACTCA guinea_pig ---------- ---------- ---------- --------TC TTGAAACTCT rat --------AC ATATGTATAT TAATATATAA AG-----C-- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog ---------- ---------- ---------- --------TC TTGCAACTCA shrew ---------- ---------- ---------- --------TC TTGTAACTCA rfbat ---------- ---------- ---------- -A-----TTC TTGCAATTCA cpbat ---------- ---------- ---------- -a-----tTC TTGCAATTCA cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- -A-----TTC TTGTAACTCA ferret ---------- ---------- ---------- -A-----TTC TTGCAACTCA dog ---------- ---------- ---------- -A-----TTC TTGCAACTCA pig ---------- ---------- ---------- --------TC TTGCAACTCA muntjak_indian ---------- ---------- ---------- -A-----CTC TTGCAACTCA sheep ---------- ---------- ---------- -A-----CTC TTGCAACTCA cow ---------- ---------- ---------- -A-----CTC TTGCAACTCA horse ---------- ---------- ---------- -A-----TTC TTGCAAGTCA armadillo CTTCT-CTAA ATTCTTGAAG AAAT-TATAA AA------TC TTGAAACTCA elephant TTTCT-CTAA ATTCttaaaa aaaa-aaaaa aaaagaaaTC TTGAAACTCA tenrec CTACTCCTGA GTTATTGAAG GAAT-TATAT AATTGAGCTC TTGAAACTCA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- --------TC TTGATA---- opossum ---------- ---------- ---------- --------TC TTGATA---- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TAGCAGG--- --GGTCATAG TTGTGAAAGT CAAAG--ATT CTAATTCATT chimp TAGCAGG--- --GGTCATAG TTGTGAAAGT CAAAG--ATT CTAATTCATT gorilla TAGCAGA--- --GGTCATAG TTGTGAAAGT CAAAG--ATT CTAATTCATT orangutan TAGCATG--- --GGTCATAG TTGTGAAAGT CAAAG--ATT CTAATTCATT gibbon TAGCAGGGGT CAGGTCATAG TTGTGAAAGT CAAAG--ATT CTAATTCATT colobus_monkey TAGCAGG--- --GGTCGTAG TTGTGAAAGT CAGAG--ATT CTAATTCATT vervet TAGCAGG--- --GGTCATAG TTGTGAAAGT CAGAG--ATT CTAATTCATT baboon ---------- ---------- ---------- ---------- ---------- macaque TAGCAGG--- --GGTCATAG TTGTGAAAGT CAGAG--ATT CTAATTCATT dusky_titi TAGCAAG--- --GGTCATAG TTGTAAAAGC CAAAG--ATT CTAATGCATT owl_monkey TAGCAAG--- --GGTCATAG TTGTAAAAGT CAAAG--ATT CTAATGCATT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TAGCAAG--- --GGTCATAG TTGTAAAAGT CAAAG--ATT CTAATGCATT galago TAGTAAC--- --GGTCAGTG TTGTGAAAGT CAAGG--ATT CTAATCCATT mouse_lemur TAGCAGA--- --GGTCACAG TGGTGAAAGT CAAGG--ATT CTAATTCACT lemur TAGCAGG--- --GGTCACAG TCCTGAAAGT CAAGG--ATT CTAATCCATT rabbit TAGCAGG--- --GGTCAGAG TTGTGAAAGC CAAGG--ATT CTTATTCATT st_squirrel TGGCAAA--- --GGTCATA- --GTGAAAGC CAAGG--ATT CAAATTCATT guinea_pig TCTCAAG--- --TGTCACAG CTGTGGAATC CAAGC--ATT CAAATTCATT rat ---------- ---------- ---------- ---------- --------TT mouse ---------- ---------- ---------- ---------- ---------- hedgehog TAGCAGG--- --GGTCATTA TTGTGAAAGC CAAGG---TT TTAATTCATT shrew TAGCAGA--- --GGTCAGAA TTGTGAAAGC CAAGG--ATT CTAATTCATT rfbat TAGCCG---- --CGGCATGG GTGGGAAAGC CAAGG--ATT CTAACTCATT cpbat TAGCAG---- --GGTCATCG TTGTGAAAGC CAAGC--ATT CTAATTCA-- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TAGCAGG--- --AGTCA--- TTATGAAAGC CAAGG--ATT CTAATTCACT ferret TAGCAAG--- --AGTCA--- TTATGAAAGC CAAGG--ATT CTAATTCACT dog TAGCAGG--- --AGTCA--- TTATGAAAGC CAGAG--ATT CGAATTCATT pig TAGCAGG--- --GGTCATTG TTGTGAAAGT CA-------- --------TT muntjak_indian TAGCAGG--- --GGTCACTG TTGTGAAAGC CAAGG--ATT CTAATTCATT sheep TAGCAGG--- --GGTCACTG TTGTGAAAGC CAAGG--ATT CTAATTCATT cow TAGCAGG--- --GGTCACTG TTGTGAAAGC CAAGG--ATT CTAATTCATT horse TAGCAGG--- --GGTCATCA TTGTGAAAGC CAAGG--ATT CTAATTCATT armadillo TAGCAAG--- --GGTCATAG CTGTAGAAGC CAAGG--ATT CTAATTCATT elephant TAGCAGG--- --GGTCATAG TTGTGAAAGC CAAGG--ATT CCAATTCATT tenrec CAGCAGA--- --GGTCATAG TTGTGAAAGC CACAG--ATT CTAATTTA-T wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---CAAA--- --TATCCCTG TTCTAAAACT CAAATACATC CTAAGTGGTT opossum ---CAAA--- --TATCCCTT TTTAAAAATT CAAACACATC CTTAATGGTT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTA-----AT TCTCATGAGA -TTTTGGGTC AATTTCCCAT AACATCCTAA chimp CTA-----AT TCTCATGAGA -TTTTGGGTC AATTTCCCAT AACATCCTAA gorilla CTA-----AT TCTCATGAGA -TTTTGGGTC AATTTCCCAT AACATCCTAA orangutan CTA-----AT TCTCATGAGA -TTTTGGGTC AATTTCCTAT AACATCCTAA gibbon CTA-----AT TCTCATGAGA -TTTTGGGTC AATTTCCCAT AACATCCTAA colobus_monkey CTA-----AT TCTCATAAGA -TTTTGGGTC AATTTCCCAT AACATCCTAA vervet CTA-----AT TCTCATAAGA -TTTTGGGTC AATTTCCCAT AATACCCTAA baboon ---------- ---------- ---------- ---------- ---------- macaque CTA-----AT TCTCATAAGA -TTTTGGGTC AATTTCCCAT AACACCCTAA dusky_titi CTA-----AT TCTCATAAGA -TTTTGGATC AATGTCCCAT AACATCCTAA owl_monkey CTA-----AT TCTCATGAGA -TTTTGGGTC AATGTCCCAT AACATCCTAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CTA-----AT TCTCATGAGA -TTTTGGTTC AATGTCCCAT AACATCCTAA galago CTA-----AT TCTCATGAGA -TTCTGGGTC AATTTCCCAC AACATTCTAA mouse_lemur CTA-----AT TCTCATGAGA -TTTTGGGTC AATTTCCCAT AACATCCTAA lemur CTA-----AT TCTCATGAAA -TTTTGGGTC AATTTCCCAT AACATCCTAA rabbit CTA-----AT TCTCATGAGA -TTTTGGGTC AATTTCTCAT AACATTCTAA st_squirrel CTA-----AT TCTCATGGGA -TTTTGGGTC AACTTCTCAT AACATTCTAA guinea_pig CTTGCCCAGC TCTCATGAGA -TTTTGGGTC AACTTCTCAT AACATTCTAA rat CTT-----AT TCTCTTGAGA -TTTTGGGTC AACTTCTCAT AACATGCTAA mouse ---------- ---------- ---------- ---------- ---------- hedgehog CTA-----A- TCTCATGGGA -TTTTGGGTC AATTTCTCAT AACATCCTAA shrew CTA-----A- TCTCATGAGA -TTTTGGGTC AGTTTCTCAT AGCATCCAAA rfbat CTA-----AT TCTCATGAGA -TTTTGGGTC AATTTCTCAT AACATCCTAA cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard CTA-----AT TTTTATGAGA -TTTT----- -ATTTCTCAT AACATCCTAA ferret CTA-----AT TCTCATGAGA -TTTT----- -ATTTCTCAC AACATCCTAA dog CTA-----AT -CTCATGAGA -TTTT----- -----CACAT AACATCCTAA pig CTA-----AT TTTTAG--AT -TTTTGGGTC AATTTCTCAT AATGCCCTAA muntjak_indian TTA-----AT TCTCAGGAGA -TTTTGGGTC AGTTTCTCAT AACATCCTAA sheep TTA-----AT TCTCAGGAGA -TTTTGGGTC AATTTCTCAT AACATCCTAA cow TTA-----AT TCTCAGGAGA -TTTTGGGTC AATTTCTCAT AACATCCTAA horse CAA-----AC ACCCATGAGA TTTTTGGGTC AATTTCTCAT AACATCCAAA armadillo CTA-----AT TCTCATGAGA -GTTTGGGTC ACTTTCTCAT AACATTCTAA elephant CTA-----AT TCTCATGAGA -TTTTGGGTC AGTTTCTCAT AACATCCTAA tenrec CTA-----AT TCTCATGAGA TTTTTACATC AGTTTCTCAT AACATCCTAA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis CCA-----AT CCTCCTAAGA -ATGTGGGTC AGTTACTCAT AAGTTCACTA opossum CCA-----GT CCTCCTGTGA -ATGAGGATC AGTTACTCAT AAGTTCACTA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATAAAGA-TT TGGGG-TCAC -CCTTTCTTT CCTCTTCTCC CTAACAAGGT chimp ATAAAGA-TT TGGGG-TCAC -CCTTTCTTT CCTCTTCTCC CTAACAAGGT gorilla ATAAAGA-TT TGGGG-TCAC -CCTTTCTTT CCTCTTCTCC CTAACAAGGT orangutan ATAAAGA-TT TGGGG-TCAC -CCTTTCTTT CCTCTTCTGC CTAACAAGGT gibbon ATAAAGA-TT TGGGG-TCAC -CCTTTCTTT CCTCTTCTCC CTAACAAGGT colobus_monkey ATAAAGA-TT TGGGG-TCAC -CCTTTCTTT CCTCTTCTCC CTAACAAGAT vervet ATAAAGA-TT TGGGG-TCAC -CCTTTCTTT CCTCTTCTCC CTAACAAGGT baboon ---------- ---------- ---------- ---------- ---------- macaque AGAAAGA-TT TGGGG-TCAC -CCTTTCTTT CCTCTTCTCC CTAACAAGGT dusky_titi ATAAAGA-CT TTGGG-TAAC -CCTATCTTT CCTCTTCTCC CTAACAAAGT owl_monkey ATAAAGA-CT TTGGG-TAAC -CCTTTCTTT CCTCTTCTCC CTAACAAAGT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ATAAAGA-CT TTGGG-TAAC -CCTTTCTTT CCTCTTCTCC CTAACAAAGT galago ATAAAGA-TT TTAGG-TCAC -CCCTTCTTT CCTCTTCTCC CTAACAAGGT mouse_lemur ATAAAGA-TT TTAGG-TCAC -CCATTCTTT CCTCTTCTCC CTAACAAGGT lemur ATAAAGA-TT TTAGG-TCAC -CCCTTCTTT CCTCTTCTCC CTAACAAGGT rabbit ATAGAGA-TT TTAGG-TCAC -CCCTTCTTT CCTCTTCTCC CTAACAAGGT st_squirrel ATAAAGA-TT TTAGG-TCAC -CCCTTCTTT CCTCTTCTCC CTAACAAGGT guinea_pig ATAAAGA-CT GTATG-TCA- -CCCTTCTTT CCTCTTCTCC CTCACAAGGT rat ATAAAGA-TT TTAGG-TCAC -CCCTTCTTT CCTCTTCTCC CTAACAAGGT mouse ---------- ---------- ---------- ---------- ---------- hedgehog ATAAGCA-TT TGGGGAACAC -CCCTTCTTT CCTCTTCT-C CTAACAAGAT shrew GTAAAGA-GT TTATG-TCAC -CTCTTCTTT CCTCTTCTCC CTAACAAGGC rfbat GTAAAGA-TT TTAGG-TCAC -CCCTTCTTT CCTTTTCTCC CTAACAAGGT cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ATAAAAA-GT TTAGG-TCAC -CCCTTCTTT CCTCTTCTCC CTAACACGGT ferret ATAAAGA-TT TTAGG-TCAC -CCCTTTCTT CCTCTTCTCC CTAACAAGGT dog ATAAAGA-TT TTAGG-TCAC -CCCTTCTTT CCTCTTCTCC CTAACAAGGT pig CTAAAGA-TT TTAGG-TCAC -CCCTTCTTT CCCCTTC--C CTAACAAGGT muntjak_indian ATAAAGGTTT TTAGA-TCAC -GCCTTCTTT CCTCTTCTTC TTAACAAGGT sheep ATAAAGGTTT TTAGA-TCAC -CCCTTCTTT CCTCTTCTTC TTAACAAGGT cow ATAAAGGTTT TTAGA-TCAC -CCCTTCTTT CCTCTTCTTC TTAACAAGGT horse GTAAAGATTT TTAGG-TCCC -CCC----TT CCTCTTCTCC CTAACAAGGT armadillo ATAAAGA-TT TTAGG-TCAC -CCCTTCTTT CCTCTTCTCC CTAACATGGT elephant ATCAAGA-TT TTAGG-TCAC CCCCTTCTTT CCTCTTCTCC CTAACAAGGT tenrec ACCAAG---- ---------C GCCCCGCTTC CCTCTGGTCC CTAACAAGGG wallaby ---------- ---------C -TCCTTTTTA CTGC------ --AAAAAGAT monodelphis ATAAAGA--- TCAGG-TCA- ---------- ---------- ---------- opossum ATAAAGA--- TTAGG-TCA- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TAGTTAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCC-C TGGACAATGA chimp TAGTTAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCC-C TGGACAATGA gorilla TAGTTAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCC-C TGGACAATGA orangutan TAGTTAGA-T TTGTGCAGAT GAT-CACTGT TCCA-GCC-C TGGACAATGA gibbon TAGTTAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCC-C CGGACAATGA colobus_monkey TAGTTAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCC-C CGGACAATGA vervet TAGTTAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCC-G CGGACAATGA baboon ---------- ---------- ---------- ---------- ---------- macaque TAGTTAGA-T TCATGCAGAT GAT-CACTGT TCCA-GCC-C CAGACAATGA dusky_titi TAGTTAGA-T TCATGCAGAT GAT-CACTGT TCCA-GCT-C CGGACAATGA owl_monkey TAGTTAGA-T TCATGCAGAT GAT-CACTGT TCCA-GCT-C CGGACAATGA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TAGTTAGA-T TCATGCAGAC GAT-CACTGT TCCA-GCT-C CGGACAATGA galago TAGCCAGA-T TCGTGCAGAT GAT-CGCTGT TCCA-GCC-C TGGACAATGA mouse_lemur TAGTCAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCC-C TGGACAATGA lemur TAGTCAGA-T GCGTGCAGAT GAT-CACTGT TCCA-GCC-C CGGACAATGA rabbit TAGTCAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCCAC AGGACAATGA st_squirrel TAGTCAGA-T TCCCGCTGAT GAT-CACTGT TCCA-GCC-C TGGACAATGA guinea_pig TAGTCAGA-T CTACACTGAT AAT-CACTGT TCCA-GAC-C TGGACAATGA rat TAGTGAGA-T TTGTGCAGAT GAT-CGCTGT TTCA-GCC-C CGGACAATGA mouse ---------- ---------- ---------- ---------- ---------- hedgehog TAATCAGA-G GCATGCAGAT GAT-CACTGT CCCAGGCC-- AGGACAATAA shrew GAATCAGA-T TCATCCAGAT GAT-CACTGT TCCA-GCG-- GGGACAAGGA rfbat TAGTCAGA-A TTGTGCAGAT GAT-CACTGT TCCA-GCC-- AGGACAATGA cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TAGTCAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCT-- GGGACAATGA ferret TAGTCAGA-T TCGTGCAGAT GAT-CACGGC TCCA-GCC-- GGGAAAATGA dog TAGTCAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCT-- GGGACAATGA pig TAGTCAGA-T TTGTGCAGAT GAT-CACTGT TCCA-GCT-- GGGACAATGA muntjak_indian CAGTCAGA-T TCGTGCAGGT GAT-CACTGT TCCA-GCC-- GGGACAATGA sheep CAGTCAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCT-- GGGACAATGA cow CAGTCAGA-T TCGTGCAGAT GAT-CACTGT TCCA-GCT-- GGGACAATGA horse TAGTCAGCTT TCGTGCAGAT GAT-CACTGT TCCA-GCT-G GGGACAAGCA armadillo TAGTCAGA-C TCATGCAGAT GAG-CACTGT TCCA-GCC-T TGGACAATGA elephant TAGTCAGA-T GCGAGCAGAT GAT-CACTGT TCCA-GGC-C TGGACAATAA tenrec CAGTCAGA-G TGGAGACGC- ---------- ---------- ---------- wallaby GAGCAAAG-T TCATGCAAAT GAT-CACTAT TCCA-AAG-- ---------- monodelphis ---------- ---------T GATCCACCAT TCCA-AAC-- ---------- opossum ---------- ---------T GATCCATCAT TCCA-AAC-- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGGTTCATCC AAAAGCACCA CTTCCTTTTT GCTATTGACA GGAAACTCTA chimp AGGTTCATCC AAAAGCACCA CTTCCTTTTT GCTATTGACA GGAAACTCTA gorilla AGGTTCATCC AAAAGCACCA CTTCCTTTTT GCTATTGACA GGAAACTCTA orangutan AGGTTCATCC AAAAGCACCA CTTCCTTTTT GCTATTGACA GGAAACTCTA gibbon AGGTTCATCC AAAAGCACCG CTTCCTTTTT GCTATTGACA GGAAACTCTA colobus_monkey AGGTTCATCC AAAAGCACTG CTTCCTTTTT GCTATTGACA GGAAACTCTA vervet AGGTTCATCC AAAAGCACCG CTTCCTTTTT GCTATTGACA GGAAACTCTA baboon ---------- ---------- ---------- ---------- ---------- macaque AGGTTCATCC AAAAGCACCG CTTCCTTTTT GCTATTGACA GGAAACTCTA dusky_titi AGGTTCATCC AAAAGCACCG CTTCCTTTTT GCTATTGACA GGAAACTCTA owl_monkey AGGTTCATCC AAAAGCACCG CTTCCTTTTT GCTATTGACA GGAAACTCTA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AGGTTCATCC AAAAGCACCA CTTCCTTTTC GCTATTGACA GGAAACTCTA galago GGGTTCATCC AAAAGCACGG CTTCCTCCCT GCTATTGACA GGAAACCCTA mouse_lemur GGGTTCATCC AAAAGCACTG CTTCCTCTCT GCTATTGACA GGAAACCCTA lemur GGGTTCATCC AAAAGCACCG CTTCCTCTCT GCTATTGACA GGAAACCCTA rabbit GGGTTCATCC AAAAGCACCA CTTCCTCTCT GCTATTGACA GGAAACCCTA st_squirrel GGGTTCATCC AAAAGCACAG CTTCCTCTCT GCTATTGACA GGAAACCCTA guinea_pig GGGTTCATCC AGAAGCACTG CTTCCTCTCT GCTATTGACA GGAAGCCCTA rat GGGTTCATCC AAAAGCACAG CTTCCGTTCT GCTATGGACA GGAAGCCCTA mouse ---------- ---------- ---------- ---------- ---------- hedgehog GGGTTCATCC AAAAGCA-AG CTTCCTCTCT CCTATTGACA GGAAGCTCTA shrew GGGTTCATCC AAAAGCA-GG CTTCCTCTTG CCTATTGACA GGAAGCCCTA rfbat GGGTTCATCC AAAAGCACTG CTTCCTCTCT CCTACTGACA GGAAACCCTA cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard GGGTTCATCC AAAAGCACTA CTTCCTCTCT TCTATTGACA GGAAACCCTA ferret GGGTTCATCC AAAAGCACTG CTTCCTCTCT CCTATTGACA GGAAACCCTA dog GGGTTCATCC AAAAGCACTG CTTCCTCTCT CTTATTGACA GGAAACCCTA pig GGGTTCATCC AAAAGCACTG CTTCCTCTCT CCTATTGACA GGAAACCCTA muntjak_indian GGGTTCATCC AAAAGCACTG CTTCCTCTCG CCTATTGACA GGAAACCCTA sheep GGGTTCATCC AAAAGCACAG CTTCCTCTCG CCTATTGACA GGAAACCCTA cow GGGTTCATCC AAAAGCACAG CTTCCTCTCG CCTATTGACA GGAAACCCTA horse GGGTTCATCC AAAAGTACTG CTTCCTCTCT CCTATTGACA GGAAACCCTA armadillo GGGTTCATCC AAAAGTACTG CTTCCTTTCT CCTATTGACA GGAAACCCGA elephant GGGTTCATCC AAAAGCACTG CTTCCGCTCT CCTGTTGACA GGAAACCCTA tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ----ACACAA CTTCCTCTCT CCTATTGACA GGATATTCTA monodelphis ---------- ----ACATAG TTTCTTCTCT CTTTTTGACA GGATAGTCTA opossum ---------- ----GCATAG CTTCTTCTCT TTTATTGACA GGATAGTCTA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG chimp AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG gorilla AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG orangutan AAACAATTT- ---------- ---------- ---------- ---------- gibbon AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG colobus_monkey AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG vervet AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT----GAG AATCCTGTGG baboon ---------- ---------- ---------- ---------- ---------- macaque AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG dusky_titi AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG owl_monkey AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG galago AAACAACTT- ---------- ---------- ---------- ---------- mouse_lemur AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGTG AATCCTGTGG lemur AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGCA AATCCTGTGG rabbit AAACAATGTT TGTTTGCT-- --TTCCCTCT GGT--GAGAG AATCCCGTGG st_squirrel AAACAATTGT TGTTTGCT-- --TTTCCTTT GGT--AAGAG ATTGCTGTGG guinea_pig AAACAATGTT TGTTTGCT-- --TTTCCTTT GGT--AAGAG AATCCTGCGG rat AAACAATTTT TGGTAACCCC CACTTCCTTT TGG--TGGAG ATTCCTGTGG mouse ---------- ---------- ---------- ---------- ---------- hedgehog AACCTAGTTT TGTTTGCT-- --TTTCCTTT AGT--GAGAG AATCCTGTGG shrew AAACAATGTT TGTTTGCT-- --TTGCCTTT GAT--GAGAG AATCCCGTGG rfbat AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GGGAG CATCCTGTGG cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard AAACAATTTT TGTTTGC--- --TTTCCTTT GGT--TAGAG GATCCTGTGG ferret AAACAATTTT TGTTTGCT-- --TTTCCTTC GGT--GAGAG AATCCTGTGG dog AAACAATTTT TGTTTGCT-- --TTTCCTTT GGT--GAGAG AATCCTGTGG pig AAACAATTTT TGTTTGCA-- --TTTCCTTT GGT--GAGAG AATCCTGTGG muntjak_indian AAACAATTTT CCTTTGCC-- --TTTCCTTT GGT--GAGAG AATCCTGTGG sheep AAACAATGTT CATTTGCC-- --TTTCCTTT GGT--GAGAG AATCCTGTGG cow AAACAATTTT CGTTTGCC-- --TTTCCTTT GGT--AAGAG AATCCTGTGG horse AAACAACTTT TGTTTGCT-- --TTTCCTTT GGT--GAG-- -ATCCTGTGG armadillo AAACAATTTT GGTTTGCT-- --TTTCCTTC CCT--GAGAG AATCCTGTGG elephant AAACAGCTTT TGTTTGTT-- --TTTCCTTT AGT--GAGAG AATCCTGTGG tenrec ---------T TGTTTGCT-- --TTT-CTTT GGC--GAGAG AATCCTGTGG wallaby AAACAGTTTT TGT--ATT-- --TGTCCTTT TGT--GGGAG GATCCTGTGG monodelphis AAACAATTTT TGT--GTT-- --TTTCCTTT TGCAAGAGAG AATCCTGTGG opossum AAACAATTTT TGT--GTT-- --TTTCCTTT TGCAAGAGAG AATCCTGTGG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAAGCC-AAA GGTAT-ccct aaattaattt tat---taaa ataaGCTAGG chimp CAAGCC-AAA GGTAT-ccct aaattaattt tat---taaa ataaGCTAGG gorilla CAAGCC-AAA GGTAT-ccct aaattaattt tat---taaa ataaGCTAGG orangutan ---------- ---------- ---------- ---------- ---------- gibbon CAAGCC-GAA GGTAT-ccct AAATTAATTT TAT---TAAA ACAAGCTAGG colobus_monkey CAAGCC-AGA GGCAt-ccct AAATTAATTT TAT---TAAA ACAAGCTAGG vervet CAAGCC-AGA GGCAT-ccct AAATTAATTT TAT---TAAA ACAAGCTAGG baboon ---------- ---------- ---------- ---------- ---------- macaque CAAGCC-AGA GGCAt-ccct AAATTAATTT TAT---TAAA ACAAGCTAGG dusky_titi CAAGCC-AAA GGCAt-ccct AAATTAATTT TAT---TAAA ACAAGCTAGG owl_monkey CAAGCC-AAA GGCAT-ccct AAATTAATTT TAT---TAAA ACAAGCTAGG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CAAGCC-AAA GGCAT-ccct AAATTAATTT TAT---TAAA ACAAGCTAGG galago ---------- ---------- AAATTAAGAT TAT---TAAA ACAAGCTAGG mouse_lemur CCGGCC-AGA GGCAT-CCCT AAATTAAGAT TAT---TAAA ACAAGCTAGG lemur CAGGCC-AGA GGCAT-CGCT AAATTAAGAT TAT---TAAA ACAAGCTAGG rabbit TGAGCC-AAA GGCAT-CCCT AAATGATGAT TAT---TCAA ACAAGCTAAG st_squirrel TAAGCC-AGA GGCAT-CCCT AAATTAAAAT AAT---TAAA ACAAGC---- guinea_pig TAAGCCGACG GG-------T AAATTAAGAT TAT---TAAA ACAAGCTAGG rat TGAGCC-ACA GGCAG-CCCT AGATTTAGAT GAC---TAAA ACAAGC---- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TAAACC-AAA GGCAT-CCCT AAATTAAGGA TAT---TAAA ACAAGCTAAG shrew TAAACC-AAA GGCTT-CCCT AAACTGAGAT TAT---TAAA ACAAGCTAGG rfbat TAAACC-AAA GGCAT-CGCA AAATTAAGAT TAT---TAAA ACAAGTTAGG cpbat ---------- ---------- ACATTAATAT TAT---TAAA ACAAGCTAG- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard TAAACC-AGA GGCAT-ccct AAATTAAGAT TAT---TAAA ACAAGGTAGG ferret TAAACC-AAA GGCAT-CCCT ATATTAAGAG TAT---TAAA ACAAGGTAGG dog TAAACC-AAA GGCATTCCCT AAATTAAGAT TAT---TAAA ACAAGGTAGG pig TGAACC-AAA GACAT-CCCT AAATTAAGAT TAT---TAAA ACAAGGTAGG muntjak_indian TGAACC-AAA GGCAT-CCCT AAATTAAGAT TAT---TAAA ACAAGCTAGG sheep TGAACC-GAA GGCAT-CCCT AAATTAAGAT TAT---TAAA ACAAGCTAGG cow TGAACA-GAA GGCAT-CCCT AAATTAAGAT GAT---TAAA ACAAGCTAGG horse TAAACC-GAA GTCAT-CCCT AAATCAAGAT TAT---TAAA ACAAGCTAGG armadillo TAAGCC-AAA GGCAT-CCCT AAATTAAGAT TAT---TAAA ACAAGCTAGC elephant TGAACC-AAA GGCAT-ccct AAATTAAGAT TAT---TAAA ACAAGCTAGG tenrec TGAGCC-CAA GGCAT-CCCT AAATGAAGAT TAT---T-AA ACAAGCTA-A wallaby TAAGCC-AAA GGCAT-CCCT AAATTTAGAT TAC---TACA ACAAGCCAAG monodelphis TAAGCC-AAA GGCAT-CCCT AAATTTAGAT TGTAAAAAAA AAAAGCCAAG opossum TAAGCC-AAA GGCAT-CTCT AAATTTAGAT TGT---TAAA CCAAGCCAAA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATG AA-CT---TT chimp CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATG AA-CT---TT gorilla CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATG AA-CT---TT orangutan ---------- ---------- ---------- ---------- ---------- gibbon CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATG AA-CT---TT colobus_monkey CAAATATCTC TG---ATCAA -GAGATAAAA CTTGATTATG AA-CG---TT vervet CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATG AA-CT---TT baboon ---------- ---------- ---------- ---------- ---------- macaque CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATG AA-CT---TT dusky_titi CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATG AA-CT---TT owl_monkey CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATA AA-CT---TT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CAAATATCTC TGGCAATCAA -GAGATGAAA CTTGATTATA AA-CT---TT galago CAAATATCTC TGGCAATCAA -GAGATACAA TTTGATTACA AA-CT---TT mouse_lemur AAAATATCTC TGGCAATCAA -ATGATAAAA CTTGATTATA CA-CT---TT lemur AAAATATCTC TGGCAATCAA -AAGATAAAA CTTGATTACA CA-CT---TT rabbit CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATA AA-CT---TC st_squirrel -AGATATCTC TGGCAATCAA -GAGATAAAA CTTGATTAAA AA-TG---TC guinea_pig -AAATGCCTC TGGCAATCAA -GAGATGA-A CTTGATTTTA AA-CT---TT rat ----TGTCTC TAGCAACCAA -GAGATAATA CTGGTTTA-- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog TAAATGTCCC TGGCAATTAA GGAGACAAGA CTTCACTG-- ---------- shrew CAAATATCTC TGGCAATCAA -CAGATAAAT CT------TA AA-AA---T- rfbat AAAATACCTC TGGCAAGCAA -TAGATAAAG CTTGATTATT AA-------- cpbat AAAATATCTC TGGCAAGCAA -GAGATAAAA CTTGATCATA ---------- cat ---------- ---------- ---------- --------TA AA-CC---T- clouded_leopard CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTATA AA-CC---T- ferret CAAATATCTC CGGCAATCCT -GAGATAAAA CTTGATTATA AA-CC---T- dog CAAATATCTC TGGCAATCAA -GAGATAAAA CTTGATTAta aa-cc---t- pig CAAATATCTC TGACAATCAA -GAGATAAAA CTTGATTATA AA-GC---GT muntjak_indian CAAATATCTC TGACAATCCA -GAGATAAAA CTTGATTA-- ---------- sheep CAAATACCTC TGACAATCCA -GAGATAAAA CTTGATTA-- ---------- cow CAAATATCTC TGACAATCCA -GAGATAAAA CTTGATTA-- ---------- horse GAAATATCTC TGGTAATCAA -GAGATGAAA CTTGACTGTA AA-AC---T- armadillo CAAATATCTC TGGCAATCGA -GAGATAAAA CATGATTCTA AAACT---TT elephant CAAGTATCTC TGGCAATCAA -AAGATAAAA CTTGATTATA AAATG---TT tenrec TGAATATCTC TGGCAATCAA -GAGATAAAA GTTGATTA-- ---------- wallaby GAAACATCAG TGACGATCAA -GAGATAAAA TTCCA-TAta ga-tc---tt monodelphis AGAACATCAG TGGCCATCAA -GAGATAAAA TTCCA-TAta ga-gaatctt opossum AGAACATCAA TGGCAATCAA -GAGATAAAA TTCCA-TATA GA-GG---TT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAA-TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC chimp AAA-TA---T AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC gorilla AAA-TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAA-TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC colobus_monkey AAA-TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC vervet AAA-TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC baboon ---------- ---------- ---------- ---------- ---------- macaque AAA-TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC dusky_titi AAA-TAAAAT CATAAAAA-- -----A-GTG GAA------- --AA-TC-TC owl_monkey AAA-TAAAAT AATAAAaa-- -----a-gtg gaa------- --aa-tc-tc squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AAC-TAAAAT AATAAAAA-- -----A-GTG GAA------- --AA-TC-TC galago AAA-TAAAAT AAAAGGAA-- -----A-GTG GAA------- --AA-TC-TC mouse_lemur AAA-TAAAAT AAAAAGAA-- -----A-GTG GAA------- --AA-TC-TC lemur ACA-AAAAAT AAAAGAAA-- -----A-GTG GAA------- --AA-TC-TC rabbit CAA-TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC st_squirrel AAA-TAAAAT GGTAAAAA-- -----A-GTG GAA------- --AA-TC-TC guinea_pig AAA-TAAAAT AGGAAGAA-- -----A-GTG GAA------- --AA-TC-TC rat ---------- ------AA-- -----A-GTG GAA------- --AA-TC-TC mouse ---------- ------AA-- -----A-GAG GAA------- --AAATC-TC hedgehog ---------- ------AA-- -----A-GTG GAA------- --AA-TC-TC shrew ----TAAATA GTAGCCAA-- -----A-GTA GAA------- --AT-TA-TG rfbat ----TAAGTA ------AA-- -----A-GTG GAA------- --AA-TC-TC cpbat ---------- ------AA-- -----A-GTG GAA------- --AA-TC-TC cat ----TAAATT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC clouded_leopard ----TAAATT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC ferret ----CAAATT AGTAAAAA-- -----A-GTG GAA------- --AC-TC-TC dog ----taaata agtaagAA-- -----AAGTG GAA------- --AA-TC-TC pig TAAATAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC muntjak_indian ---------- ------AA-- -----A-GTG GAA------- --AA-TC-TC sheep ---------- ------AA-- -----A-GTG GAA------- --AA-TC-TC cow ---------- ------AA-- -----A-GTG GAA------- --AA-TC-TC horse ----TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-TC-TC armadillo AAA-TAAAAT AATAAGAA-- -----A-GT- ---------- ------C-TC elephant AAA-TAAAAT AATAAGAA-- -----A-GTG GAA------- --AA-CC-TC tenrec ---------- ------AA-- -----A-GTG GAA------- --AA-CCATC wallaby ggt-tcagat tctagaAAAA ATGGTG-GTG GGGGGGGGAG GGAG-TC-TC monodelphis ggt-tgaaat tcagtcAA-- -----G-GCG GGGAATTGGG GCAG-TC-TC opossum ggt-tgaaat tcagtcAA-- -----G-GCG GGGAGTGGGG G-AG-TC-TC platypus ---------- ------AA-- -----A-GTG GGA------- --AA-CA-TC chicken ---------- ------AA-- -----A-GTG GAA------- --AG-CC-TC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TG---ATCCA CA-CCATCTG TTTACCTCAT CCAGGCCAAT AAAATTCCTG chimp TG---ATCCA CA-TCATCTG TTTACCTCAT CCAGGCCAAT AAAATTCCTG gorilla TG---ATCCA CA-CCATCTG TTTACCTCAT CCAGGCGAAT AAAATTCCTG orangutan ---------- ---------- ---------- ---------- ---------- gibbon TG---ATCCA CA-CCATCTG TTTGACTCAT CCAGGCCAAT AAAATTCCTG colobus_monkey TG---ATCCA CC-CCATCTG TTTGCCTCAT CCAGGCCAAT AAAATTCCTG vervet TG---ATCCA CA-CCATCTG TTTGCCTCAT CCAGGCCAAT AAAATTCCTG baboon ---------- ---------- ---------- ---------- ---------- macaque TG---ATCCA CA-CCATCTG TTTGCCTCAT CCAGACCAAT AAAATTCCTG dusky_titi TG---ATCCA CA-CCATCTG TTTGCCTCAT CCAGGCCAAT ACAATTCCTG owl_monkey tg---atcca ca-ccatcTG TTTGCCTCAT TCAGGCCAAA TCAATCCCTG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TG---ATCCA CA-CCATCTG TTTGCCTCAT TCAGGCCAAA TCAATCCCTG galago TG---ATCCG CA-CCATCTG TTTGCCTCAT CCAGGCCAAT AAAATTCCTG mouse_lemur TG---ATCCG CA-CCATCTG TTTGCCTCAT CCAGGCCAAT AAAATTCCTG lemur TG---ATCCA CA-CCATCTG TTTGCCTCAT CCAGGCCAAT AAGATTCCTG rabbit TG---ATCCA CA-ACATCTG TTTGTCTCAT CCAGGCCAAT AAAATTCCTG st_squirrel TG---ATCCC CA-CCATCTG TTTGCCTCAT CCAGGCCAAT AAAATTCCTG guinea_pig TG---ATCTG CA-CCATCTG TTTGCCTCAT CCAGGCCAAT AAAATTCCTC rat CA---ATCCA CACCCATCTG TTTGCCTCAT TCAG--CAAT AAAATTCCTG mouse CA---ATCCA CTCCCATCTG TTTGCCTCAT CCAG--CAAT ATAATTCCTG hedgehog TG---ATCCA CA-CCATCTG TTTGTTTCAT CCAGGCCAAT AAAATTCCTG shrew TG---AACCA CA-CCATCTG CTTGCTCTGT CCAGGCCAAC AAAATTCCTG rfbat TG---ATCCA TA-CCACCTG TTTGTCTCAT CCAGGCCAAT AAAATTCCTG cpbat TA---ATC-- -A-CCATCTG TTTATCTCAT CCAGGCCAAT AAAATTCCTG cat TG---ATCCA CA-CCATCTG TTTGTCTCAT CCAGGTCAAT AAAATTCCTG clouded_leopard TG---ATCCA CA-CCATCTG TTTGTCTCAT CCAGGCCAAT AAAATTCCTG ferret TG---ATCCA CA-CCATCTG TTTGTCTCAT CCAGGCCAAT AAAATTCCTG dog TG---ATCCA CA-CCATCTG TTTGTCTCAT CCAGGCCAAT AAAATTCCTG pig TG---ATCCA CA-CCATCTG TTTGTCTCAT CCAGGCCAAT AAAATTCCTG muntjak_indian TA---ATCTA CA-CCATCTG TTTGCCTCAT CTTGGCCAAT AAAATTCCTG sheep TG---ATCTA CA-CCATCTG TTTGCCTCAT CTTGGCCAAT AAAATTCCTG cow TG---ATCTA CA-CCATCTG TTTGCCTCAT CTTGGCCAAT AAAATTCCTG horse TG---ATCCA CG-CCATCTG TTTGTCTCAT CCAGGCCAAT AAAATTCCTG armadillo TG---GTCCA CA-CCATCTG TTTATCTCAT CCAGGCCAAT AAAATTCCTG elephant TG---ATCCA CA-CCATCTG TTTGCCTCAT CCAGGCCAAT AAAATTCCTG tenrec TGTGGATCCA CA-CCATCTG TTTGTCTCAT CCAGGCCAAG AAAATTCCTG wallaby TG---ATCCA CA-CCATCTG TTTGCCTCAT ACAGGCCAAG AAAATTCTGG monodelphis TG---ATCCA CA-CCATCTG TTTGCCTCAT ACAGGCCAAG AAAATTCCAG opossum TG---ATCTA CA-CCATCTG TTTGCCTCAT ACAGGCCAAG AAAATTCCAG platypus TG---ACCCA CA-CCATCTG TTTGCCTCAT TCGGAGCAAT AAAATTCCGG chicken TG---ATCTG CT-TCATGTG TTTGCTTTGT GC--GCTCAT ACG-TGCCTG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGGTTGTCAA GGCACAGGAT ACTTG-TG-- -AAAAAGATT CAGATAAGA- chimp AGGTTGTCAA GGCACAGGAT ACTTG-TG-- -AAAAAGATT CAGATAAGA- gorilla AGGTTGTCAA GGCACAGGAT ACTTG-TG-- -AAAAAGATT CAGATAAGA- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AGATTGTCAA GGCACAGGAT ACTTG-TG-- -AAAAAGATT CAGATAAGA- colobus_monkey AGATTGTCAA GACACAGGAC ACTCG-TG-- -AAAAAGATT CAGATAAGA- vervet AGATTGTCAA GACACAGGAT ACTTG-TG-- -AAAAAGATT CAGATAAGA- baboon ---------- ---------- ---------- ---------- ---------- macaque AGATTGTCAA GACACAGGAT ACTTA-TG-- -AAAAAGATT CAGATAAGA- dusky_titi AGATTGTCAA GACACAGGAT ACTTG-TG-- -AAAAAGATT AAGATAAGA- owl_monkey AGATTGTCAA GACATGGGAT ACTTG-TG-- -AAAAAGATT AAGATAAGA- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AGATTGTCAA GACATAGGAT ACTTG-TG-- -AAAAAGATT AAGATAAGA- galago AGATTGTCAA GACACAGGAT ACTTG-TG-- -AAAAAGATT AAGATAAGA- mouse_lemur AGATTGTCAA GACACAGGAT ACTTG-TG-- -AAAAAGATT AAGATAAGAT lemur AGATTGTCAA GACACAGGAT ACTTG-TG-- -AAAAAGATT AAGATAAGA- rabbit AGATTGTCCA GACACAGGAT ATTTG-TG-- -AAAATGATT ATGATAAGG- st_squirrel AGATTGTCAA GACACAGGAT GCTTG-TG-- -AAAAAGATT AAGATAAGA- guinea_pig AGACTGTCAA Gacacaaaat acttgtga-- -aaaaagact aagataaga- rat AGATTGCCAA GACACGGGAC ACTTG-GG-- -TAAAAGATT AAGATAAGG- mouse AGACTGCCAA GAC------- -CTTG-GG-- -TAAAAGATT AAGATAAGA- hedgehog AGAATGTCAA GACACAGAAT ACTTG-TG-- -AAAAAGATT AAGATAAGA- shrew AGATTGTCAA GGGGCAGATT GCTTG-TG-- -AAAAAGATA AAGATAAGA- rfbat AGATTGTCAA GGCACAGAAT ACTTG-CA-- -AAAAAAA-- AAATTAAGA- cpbat AGATGGTCAA GACATATAAT ACTTC-TA-- -AAAAGA--- ---TTGAGA- cat AGATTGTCAA GACACGGAGT ACTTG-TG-- -AAAAAGATT AAGATAAGA- clouded_leopard AGATTGTCAA GACACGGAGT ACTTG-TG-- -AAAAAGATT AAGATAAGA- ferret AGATTGTCAA GACACAGAGT ACTTG-TG-- -AAAAAGATT AGGATAAGA- dog AGATTGTCAA GACACAGAGT ACTTG-TG-- -AAAAAGATT AAGATAAGA- pig AGATTGTCAA GACCGAGAAT ACCTG-TG-- -AAAAAGATT AAGATAAGA- muntjak_indian AGATTGTCAA GACACAGAAT ACCTG-TG-- AAAAAAAATT AAGATGAGC- sheep AGATTGTCAA GACACAGAAT ACCTG-TGA- AAAAAAAATT AAGATGAGC- cow AGATTGTCAA G--ACAGAAT ACCTG-TG-- AAAAAAAATT AAGATGACC- horse AGATTGTCAA AACGCAGAAT ACTTC-TG-- -AAAAAGTTT AAGATAAGA- armadillo AGATTATCAA AATACAGGAT ACTTG-CT-- -AAAAAGATT AAGATAAGA- elephant AGATTGTCAA GACACAGGAT ACTTG-CT-- -AAAAAGATT AAGA------ tenrec GGATTGTCAA GGCACAGGAT ACTTG-CT-- -AAAAAGATT AAGGCAAGA- wallaby GGATTACAAA GTGACTGGAT ACTTG-CT-- -CAAAAGATT AAGATAAGG- monodelphis GGATTATAAA GTGACGGGAT ACTTG-CT-- -AAAAAGATT AAGATAAGG- opossum GGATTATAAA GTGGCGGGAT ACTTG-CT-- -AAAAAGATT AAGATAAGG- platypus AGATTGTAAA GTGAGGGGTT ACTTG-CA-- AAAAAAGATT AAGATAAGG- chicken A--------- -----ATGAT TCTTG-TTAC AAAATAAAAC AGGATAAGT- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAAACAGAA chimp ----T--T-T -----TTCAT GGTTAAATTC TCA-----GG TAAAACAGAA gorilla ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAAACAGAA orangutan ---------- ---------- ---------- ---------- ---------- gibbon ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAAACAGAA colobus_monkey ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAAACTGAA vervet ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAAATTGAA baboon ---------- ---------- ---------- ---------- ---------- macaque ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAAACTGAA dusky_titi ----T--T-T -----TTTGT GGTTAAATTT TCA-----GG TAAAACTGAA owl_monkey ----T--T-T -----TTTGT GGTTAAATTT TCA-----GG TAAAACTGAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---TT--T-T -----TTTGT GGTTAAATTT TCA-----GG TAAAACTGAA galago TTTTT--T-T -----TTCAT GGTTGAATTT TCA-----GG TAAAACTGGA mouse_lemur TTTTT--T-T -----TTCAC GGTTAAATTT TCA-----GG TAAAACTGGA lemur -TTTT--T-T -----TTCAC GGTTAAATTT TCA-----GG TAAAACTGGA rabbit ----T--T-T -----TTCAT GCTGAAATTT TCA-----GG TAAAACTGGA st_squirrel ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAAACTGGA guinea_pig -------t-t -----ttaac actcaatttT TCA-----GG TAAAATTGGA rat -------T-T -----TGCAT GGTTAAATTT TCA-----GG T-AAATTAGA mouse -------T-C -----TTCAT GGTTAAATTT TCA-----GG T-AAATTAGA hedgehog ----T--T-C TTT--TTCAT GGTTAAGTTT TCA-----GG TAAAACTGGA shrew ----T--T-T TTTATTTCAT GGTTAAATTT TCA-----GG AAGAAGTGGA rfbat ----T--T-T -----TTCAT GGTTAAGTTA TCA-----GG TAAAA-TGGA cpbat ----T--T-T -----TTCAT GGTTAAATT- TCA-----AG TAAAACTGGA cat ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAACCTGGA clouded_leopard ----T--T-T -----TTCAT GGTTAAATTT TCA-----GG TAAACCTGGA ferret ----T--T-T -----CTCAT GGTTAAATTT TCA-----GG TAAACCTGGA dog ----T--T-T -----TTCAT GGTGAAATTT TCA-----GG TAAACCTGGA pig ----T--TTT -----TTCAT GGTTAAATTT TTA-----GG TAAAACTGGA muntjak_indian ----T--TTT -----CTCAT GATTAAATTT TTA-----AG TAAAATTAGA sheep ----T--TTT -----TTCAC GGTTAAATTT CTA-----GG TAAAACTGGA cow ----T--TTT -----TTCAT GGTTAAATTT TTA-----GG TAAAACTGGA horse ----T--TCT -----TTCAT GTTTAAATTT TCA-----GG TAAAACTGGA armadillo ----T--T-T -----TTCAC GATTAAA-CT TCA-----GG TAAAACTGGA elephant ----T--T-T -----TTCAC AGTTAAATTT TCA-----GG TAAAACTGGA tenrec TTCTT--T-T -----TTCAT GGCTACATTT TCA-----GG TAAGGCTGGA wallaby --TTT--T-T -----TTCAT GTTTGGA--T TCA-----GG TAACTTCAGG monodelphis ----T--T-T -----TTCAT GTTTGGATTT TCA-----AG TA-------- opossum ----T--T-T -----TTCAT GTTTAGATTT TCA-----GG TA-------- platypus ----C--T-T -----TGTAA TTTTG---TT TCA-----GG TAAACAGAGG chicken ----TAGC-C -----CTTGT AGTTT----T TCATCTATGC TGAAA---GA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA chimp AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA gorilla AAATACCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTT- ------CATA colobus_monkey AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA vervet AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA baboon ---------- ---------- ---------- ---------- ---------- macaque AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA dusky_titi AAATGCCACA CAGAGAGAGT TTT---CAAT TATTTATTC- ------CATA owl_monkey AAATGCCACA CAGAGAGAGT TTT---CAAT TATTTATTC- ------CATA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AAATGCCACA CAGAGAGAGT TTT---CAAT TATTTATTC- ------CATA galago AAATGCCACA C--AGAGAGC TTT---CAAT GATTTATTT- ------CATA mouse_lemur AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA lemur AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA rabbit AAGTGCCACA CAGAGAGAAC TTG---C--- ---TGATTC- ------CATA st_squirrel AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA guinea_pig AAATGTCACA CAGAG----- ATCTTTCAAT GATTTATTAT TTATTCCATA rat AAATGCCACA CAGAGAGGGA ATC---CAAT GAGTTATTA- ------CATA mouse AAATGCCACA CAGAGCGGGA ATC---CAAT GAGTTATTG- ------CATA hedgehog AAATACCACA CAGAGAGAGC TTT---CAGT GATTTATTC- ------CATA shrew AAATACCACA CAGAG----C TTT---CAAT GATTTATTT- ------CATA rfbat ATATGCCACA CAGGG--AGT TTT---CAAC TGTTTATTC- ------CATA cpbat AAATGCCACA CAGAG--AGT TTT---CAAT AACTTGTTC- ------CACA cat AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA clouded_leopard AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA ferret AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA dog AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA pig AAATGCCACA CAGAGAGAGC TTT---CAAT GATTTATTA- ------CATA muntjak_indian AAATGCCACA CACAGAGAGC TTT---CAAT GATTTATTA- ------C--- sheep AAATGCCACA CACAGAGAGC TTT---CAAT GATTTATTA- ------CACA cow AAATGCCACA CACAGAGA-C CTT---CAAT GATTTATTA- ------CACA horse AAATACCACA CAGAGAGAGC TTT---CAAT GATTTATTC- ------CATA armadillo AAATGCCACA CAGAGAGAGC TTT---CAAT TATTTATTC- ------TATA elephant AAATGCCACA CAGAGAGAGC TTT---CAGC TGTTTATTC- ------CATA tenrec AAATGCCACC CAGAGAGAGC TTT---CAGA TGTTTATTC- ------CATA wallaby AAATGCAACA CACAGAGAGC TTT------- -ATTTACTC- ------CACA monodelphis AAATGCAGCA CAGAGAGAAC TTT------- -ATTTATTT- ------CACA opossum AAATGCAGCA CACAGAGCGC TTT------- -ATTTATTC- ------CAT- platypus A--------- CAGAGAGGGC ATT---T--- -ATATATTC- ------CACA chicken AAATGCAGTG CAAAGGGAAC TGT---CATT AACTTTCAG- ------CTCA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AA---CAGGC AGTTTGCTGT GTTGGAA-TC CCTGAC---- TCAATAAGTC chimp AA---CAGGC AGTTTGCTGT GTTGGAA-TC CCTGAC---- TCAATAAGTC gorilla AA---CAGGC AGTTTGCTGT GTTGGAA-TC CCTGAC---- TCAATAAGTC orangutan ---------- ---------- ---------- ---------- ---------- gibbon AA---CGGGC AGTTTGCTGT GTTGGAA-TC CCTGAC---- TCAAGAAGTC colobus_monkey AA---CAGGC AGTTTGCTGT GTTGGAA-TC CCTGAT---- TCAAGAAGTC vervet AA---CAGGC AGTTTGCTGT GTTGGAA-TC CCTGAC---- TCAAGAAGTC baboon ---------- ---------- ---------- ---------- ---------- macaque AA---CAGGC AGTTTGCTGT GTTGGAA-TC CCTGAC---- TCAAGAAGTC dusky_titi AA---CAGGC AGTTTGCTGT GTTGGAA-TC CCTGAC---- TCAAGAAGTC owl_monkey AA---CAGGC AGTTTACTGT GTTGGAA-GC CCTGAC---- TCAAGAAGTC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AA---CAGGC AGTTTGCTAT GTTGGAA-TC CCTGAC---- TCAAGAAATC galago AA---CAGGC AGTTTGCTGT GTTGGAA-TC CCTGGC---- TCAAGAAGTC mouse_lemur AA---CAGGC AGTTTGCTGT GTTGGAA-AC CCTGGC---- TCA---GGTC lemur AA---CAGGC AGTTTGCTAT GTTGGAA-AC CCTGGC---- TCAAGAAGTC rabbit AA---CAGGC GGTTTGTTGT GTTGGAA-TC CCTGAC---- TCAAGAAATC st_squirrel AA---CAGAG TGTGTGTTGT GTTGGAA-TC CCTGAC---- TCAAAAAGTC guinea_pig AA---CAGTC AGT-TTGCAG TTTGGAA-TC CATGAC---- TCAAGAAGTC rat AA---CAGCC AGC-TGCCAC ACTGAAA-TC CCTGAC---- TCAAGAAGTC mouse AA---CAGCC AGC-TGCCTC ACTGAAA-TC CCTGAC---- TCAAGAAGTC hedgehog AA---CAG-- --TTTGCTGG GTTAGAA-TC CCTGAC---- TCAAGAAATC shrew AA---CAGGC ATTTTCCTGG ATTGGAA-TC CCTGAG---- TCAAGAATTC rfbat AA---CAAAT GGTTTGCTTG GTTGGAA-TC CCTGAC---- TCAAGAAGT- cpbat AAAGACAGAC GGAGTGCTGA GTTAAAAATC TCTGAC---- TCAAGAAGTC cat AA---CAGGC AATTTGCTGG GTTGGAA-TC CCTGAC---- TCAAAAAGTC clouded_leopard AA---CAGGC AATTTGCTGG GTTGGAA-TC CCTGAC---- TCAAAAAGTC ferret AA---CAGGC AATTTGCTGG GTTGGAA-TC CTTGAC---- TCAAGAAGTC dog AA---CAGGC AGTTTGCTGG GTTGGAA-TC CCTGAC---- TCAAGAAGTC pig AA---CAGGC AGTTTGTTGG GTTGGAA-TC CCTGAC---- TCAAGAAGTC muntjak_indian -A---CAGGC AGTTTGCTGG GTTGCAA-TC CATGAG---- TCAAGAAGCA sheep AA---CAGGC AGTTTGCTGA GTTGGAA-TC CATGAG---- TCAAGAAGTG cow AA---CAGGC AGTTTGCTGA GTTGGAA-TC CGTGAG---- TCAAGAAGTG horse AA---CAGGC AGTTTGCCGG GTTGGAA-TC CCTG------ --AAGAAGTC armadillo AA---CAGGC AGTTTGCTGG GTTGAAA-TC TCTGACTCAT TCAAGAAGTC elephant AA---CAGGC TGTTTGCTGG GTTGGAA-TT CATGAC---- GCAAGAAGTC tenrec AA---CAGA- -GTTTGCTGG CTTGGAA-TT CCTGAC---- TCAAGAACTC wallaby GA---CAGTT AGTTTGTTGT GCAAGAA-TC CCTGAC---- TGAGGAAGTA monodelphis AA---AA--- AGTTTGTTGT GCTGGAA-TC CCTGAT---- TGAGGAAGTT opossum AA---AA--- AGTTTGTTGT GCTGGAA-TC CCTGAT---- TGAGGAAGTT platypus AA---AAGGC TGTTGGTTGT GCTGGAA-TC CCTGAC---- TCAAGAAGGG chicken TT---TTGGC AGCTAATGGT GGTGAAA-AC AGATGG---- GCAAGCAAAG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGGGCTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA chimp TGGGCTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA gorilla TGGGCTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA orangutan ---------- ---------- ---------- ---------- ---------- gibbon TGGGCTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA colobus_monkey TGGGCTTCCA TTTGAATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA vervet TGGGCTTCCA TTTCCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA baboon ---------- ---------- ---------- ---------- ---------- macaque TGGGCTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA dusky_titi TGGGCTCCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGAAAATAA owl_monkey TGGGCTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TGGCCTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATAA galago TGGCCTTCCA TTTGCATTCA TTTCAATCGC AATTAGCTG- GTGGAAACAA mouse_lemur TGGAGTTCCA TTTGCAGTCA TTTAAATCGC AATTAGCTG- GTGGAAATGA lemur TGGACTTCCA TTTGCATTCA TTCAAATCGC AATTAGCTG- GTGGAAACGA rabbit TGGGATTCTA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATGA st_squirrel TGGGCTTCCA TTTGCATTCA TTTAAATCGC AATTAGCTG- ATGGAAATGA guinea_pig TGGGCTTCCA TTTGCATTCA TTTAAATCCC AATTAGCTG- GTGAAAATGA rat TGGGCTTCCA TTTGCATTCA TTTAAGTTGG AATTAGCTG- TTGGAAATGA mouse TGGGCTTCCA TTTGCATTCA TTTAAGTTGG AATTAGCTG- TTGGAAACGA hedgehog TGAGCTTCCA TTTGCATTCA CTGAAATGGC AATTAGTTG- GTGGAAATGA shrew TAGGCTTCCA TTTGCATTCA TTTAAATGGC AATTAGCTG- GT-T------ rfbat TGTACTGCTA TTTGCATTAA TTTAAATGGC AATTAGCTG- GTGGAAATGA cpbat TGGGCTTCCA TTTGCATTCA TTTAAATGTC AATTAGCTG- GTGGAAATGA cat TGGGCTTCTA TTTGCATTCA TTTAAATGGC AATTAGCTG- GTGCAAATGA clouded_leopard TGGGCTTCTA TTTGCATTCA TTTAAATGGT AATTAGCTG- GTGCAAATGA ferret TAGGCTTCTA TTTGCATTCA TTTAAATGGC AATTAGCTG- GTGGAAATGA dog TGGGCTTCTA TTTGCATTCA TTTAAATGGC AATTAGCTG- GTGGAAATGA pig TGGACTTCTA TTTGCATTCA TTTAAATGGC AATTAGTTG- GTGGGA---- muntjak_indian TGGGCCTCCA TTTACATTCA TCTAAATGGC AATTAGCTG- GTGG------ sheep TGGGCTTCCA TTTGCATTCA TCTAAATGGC AATTAGCTG- GCGG------ cow TGGGTTTCCA TTTGCATTCA TCTAAATGGC AATTAGCTG- GTGG------ horse TGGGCTCCCA TTTGTATTCA TTTAAACAGC AATTAGCTG- GTGAAAATGA armadillo CAGACTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATGA elephant TGGGCTTCCA TTTGCATTCA TTTAAATTGC AATTAGCTG- GTGGAAATGA tenrec TGGACTTCCA TTTGCATGCA TCTAAGTTGC AATTAGCTA- GTGGAAAAGA wallaby TGGTCTTCTA CTCCAGTTCA GTTAAGATGA AATTAGCTG- GCAGTGGTTG monodelphis TGGTCTTCCA TTCCAATTCA GTTAGGATGA AATTAGCTA- GAGGTAATTG opossum TGGTCTTCCA TTCCAATTCA GTCAGAATGA AATTAGCTA- GAGGTAATTG platypus CTGTCTTCCG CTCGCA-TCA TTTAAACTGC AGTTAGCTA- GCAG------ chicken CAGCTTTCCC CTT-CATTCA GGTATGTGGC AATTCGCAGC CTGA------ fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATAAT----T ACAAGCAG-A AATTTATGGT AAA-CAAGAT GAAATGCTTG chimp ATAAT----T ACAAGCAG-A AATTTATGGT AAA-CAAGAT GAAATGCTTG gorilla ATAAT----T ACAAGCAG-A AATTTATGGT AAA-CAAGAT GAAATGCTTG orangutan ---------- ---------- ---------- ---------- ---------- gibbon ATAAT----T ACAAGCAG-A AATTTATGGT AAA-TAAGAT GAAATGCTTG colobus_monkey ATAATTAATT ACAAGCAG-A AATTTATGGT AAA-CAAGAT GAAATGCTTG vervet ATAATTAACT ACAAGCAG-A AATTTATGTT AAA-CAAGAT GAAATGCCTG baboon ---------- ---------- ---------- ---------- ---------- macaque ATAATTAACT ACAAGCAG-A AATTTATGTT AAA-CGAGAT GAAATGCTTG dusky_titi ATAATTAACT AAAGGCAG-A AATTTATGGT AAA-CAAGAT GAAACACTTG owl_monkey ATAAATAACT AAAAGCAG-A AATTTATGGT AAA-CAAGAT GAAATGCTTG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ATCATTAACT AAAAGCAG-A AATTTATGGT AAA-CAAGAT GAAATGCTTG galago ATACCTAATT AGAAACAG-A AATGTATTAT ATG-TCAGAT GAAATGCTTG mouse_lemur ATAGTTAATT ACAAACAG-A AATTTATGGT ATA-TAAAAT GAAATGCTTG lemur ATAGTTAATT ACAAATAG-A AA-TTATGGT ATG-TAAAAT GAAATGCTTG rabbit A----TAATT AAAAGCAG-A AATTTATGGT AAA-CAAGAT GAAATGCCTG st_squirrel ATAGTTAATT AAAAACAG-A AATTTATGAT GCA-CAAGAG GAAATGCTTG guinea_pig ATAGTTAATT AAAAATAG-A AATTTGTGGC ATA-CAAGAA GAAATGCTTG rat GTAGCTAATT AAAAACAG-A AA--TATGGC ATA-CAAGAT GAAG------ mouse ATAGCTAATT AAAAACAG-A AACTTATGGT ATA-CAAGAT GAAA------ hedgehog GTAGTTAACT AAAAACAG-A AA-------- -aaCCAAGAT GAAT------ shrew ---------- ---------- ---------- ---------- ----TGCTTA rfbat ATAGTTAATT AAAAACAG-A AATTTATGGT -----AAGAT GAAATGCT-- cpbat ATAGTTAATT AAAAACAA-C AATTTATGAT ----AAAGAT GAAA------ cat ATAGTTAATT AAAAACAG-A AA-------- ----CAAGAT CAAATGCTTG clouded_leopard ATAGTTCATT AAAAACAG-A AA-------- ----CAAGAT CAAATGCTTG ferret ATAGTTAATT AAAAACAG-A AA-------- ----CAAGAA GAAATGCCTG dog ATAGTTAATT AAAAACAGAA AA-------- ----CAAGAT GAAATGCTTG pig ------AATT AAAAACAG-A AA-------- ----CACGAT GAAA------ muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ACAGTTAATT AAAAACAG-A AA-------- ----CAAGAT GAAATGCTTG armadillo ATAGCTAATT AAAAACAG-A AATTTATGGT ATA-CAAGAT AAAATGCTTG elephant ACAGTTAATT AAAAACAG-A AATTTATGGT ATA-TAAGAT GGAATACTTC tenrec ATAGTTCATT TAAAACAG-A AAATTATGGT ATA-CAAGAT GGAATACTTG wallaby TTAATTAAA- ------AA-T AATTTATAAT ATA-TGCAGA GAAATATTTG monodelphis TTAGTTAAAT AAAAATAG-C TATTTATAGT ATA-TATAGA GAAATGTTTG opossum TTAGTTAAAT TAAAATAG-T AATTTATAAC ATA-TGCAGA GAAATGTTTG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGACATTGTC AAATAtaatt aaaattaaat atttatttaa tttttactta chimp TGACATTGTC aaatataat- ---------- ---------- ---------- gorilla TGACATTGTC aaatataat- ---------- ---------- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TGACATTGTC AAACAtaat- ---------- ---------- ---------- colobus_monkey TGACATTGTC AAATACaat- ---------- ---------- ---------- vervet TGACATTGTC AAATACaat- ---------- ---------- ---------- baboon ---------- ---------- ---------- ---------- ---------- macaque TGACATTGTC AAATACaat- ---------- ---------- ---------- dusky_titi TGAAATTTTC aaatataat- ---------- ---------- ---------- owl_monkey TGAAATTGTC aaatataat- ---------- ---------- ---------- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TGAAATTGTC AAATATGAT- ---------- ---------- ---------- galago TGAAATGGTC AAA------- ---------- ---------- ---------- mouse_lemur TGAAATTGTC aaatataat- ---------- ---------- ---------- lemur TGAAATTGTC aaatataat- ---------- ---------- ---------- rabbit GGAAAT---- ---------- ---------- ---------- ---------- st_squirrel TAGAATTGTC AGatat---- ---------- ---------- ---------- guinea_pig GGAAATtaaa aaatagaat- ---------- ---------- ---------- rat ------TGTC aaatat---- ---------- ---------- ---------- mouse ------TGTC AAATAT---- ---------- ---------- ---------- hedgehog ------TGTC ATATATGat- ---------- ---------- ---------- shrew TTAGTCTACC CGAAATACA- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ------TATC aaatataat- ---------- ---------- ---------- cat TG-------- ---------- ---------- ---------- ---------- clouded_leopard TG-------- ---------- ---------- ---------- ---------- ferret TG-------- ---------- ---------- ---------- ---------- dog TG-------- ---------- ---------- ---------- ---------- pig ------TGTC aaatat---- ---------- ---------- ---------- muntjak_indian ------TGTC aaatataat- ---------- ---------- ---------- sheep ------TGTC AAATACAAT- ---------- ---------- ---------- cow ------TGTC aaatataat- ---------- ---------- ---------- horse TG----TGTC ACataa---- ---------- ---------- ---------- armadillo TGAAATTGTC AAATGTAAC- ---------- ---------- ---------- elephant TGAAAT---- ---------- ---------- ---------- ---------- tenrec TGAAAT---- ---------- ---------- ---------- ---------- wallaby TGAAAG---- ---------- ---------- ---------- ---------- monodelphis TGAAAT---- ---------- ---------- ---------- ---------- opossum TGAAAT---- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ttaaaattaa atatttattt aaattaaata tttattcaaa aa-taGGAAT chimp ---------- ---------- ---------- ---------- ---taGGAAT gorilla ---------- ---------- ---------- ---------- ---taGGAAT orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---------- ---------- ---------- ---------- ---TAGGAAT colobus_monkey ---------- ---------- ---------- ---------- ---TGGGAAT vervet ---------- ---------- ---------- ---------- ---TGGGAAT baboon ---------- ---------- ---------- ---------- ---------- macaque ---------- ---------- ---------- ---------- ---TGGGAAT dusky_titi ---------- ---------- ---------- ---------- ---CAGGAAT owl_monkey ---------- ---------- ---------- ---------- ---CAGGAAT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset ---------- ---------- ---------- ---------- ---CAGGAAT galago ---------- ---------- ---------- ---------- ---CATGAAT mouse_lemur ---------- ---------- ---------- ---------- ---CAGGATT lemur ---------- ---------- ---------- ---------- ---CAGGATT rabbit ---------- ---------- ---------- ---------- ---------- st_squirrel ---------- ---------- ---------- ---------- ---TGAAAAT guinea_pig ---------- ---------- ---------- ---------- ---TTAGAAT rat ---------- ---------- ---------- ---------- ---TTGGAAT mouse ---------- ---------- ---------- ---------- ---TTGGAAT hedgehog ---------- ---------- ---------- ---------- --CTATTAAC shrew ---------- ---------- ---------- ---------- --CTAGGAAT rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- --CTAGGAAT cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- --CCAGGAAT muntjak_indian ---------- ---------- ---------- ---------- --ACAGAAAT sheep ---------- ---------- ---------- ---------- --AC--AAAT cow ---------- ---------- ---------- ---------- --ac--aaat horse ---------- ---------- ---------- ---------- --CTGGGAAT armadillo ---------- ---------- ---------- ---------- ------AAAG elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAATATGATG TTTCCTTTTT GTAGTTTTTA TTGGCTCAAG ATGAACA--- chimp AAATATGATG TTTCCTTTTT GTAGTTTTTA TTGGCTCAAG ATGAACA--- gorilla AAATATGATG TTTCCTTTTT TTAGTTTTTA TTGGCTCAAG ATGAACA--- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAATATGATG TTTCCTTTTT GTAGTTTTTA TTGGCTCAAG ATGAACA--- colobus_monkey AAATATGATG TTTCCTTTTT GTAGTTTTTA TTGGCTCAAG ATGAACA--- vervet AAATATGATG TTTCCTTTTT GTAGTTTTTA TTGGCTCCAG ATGAACA--- baboon ---------- ---------- ---------- ---------- ---------- macaque AAATATGATG TTTCCTTTTT GTAGTTTTTA TTGGCTCAAG ATGAACA--- dusky_titi AAATATGATG TTTCCTTTTT GTAGTTTTTA TTGGCTC-AG ATGAACA--- owl_monkey AAATATGATG TTTCCTTTTT GTAGTTTTTA TTGGCTCAAG ATGAATA--- squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AAATATGATG TTTCCTTTTT GTAGTTTGTA TTGGCTCAAG ATGAACA--- galago ACATATGATG TTTCCTTCTT AGAGTTTTTA TTGGCTCAAG ATGAACA--- mouse_lemur AAATATGATG TTTCCTTCTT GTAGTTTTTA TTGGCTCGAA ATGAACA--- lemur AAATATAATG TTTCCTTCTT GTAGCTTTTA TTGGCTCAAA ATGAACA--- rabbit ------GATG TTTCCTTCTT GTAGTTTTTA TCGCCTCAAA TAGAACA--- st_squirrel AAATGTGATG TTTCCTTCTT GTAGTTTTTA TTGGCTCACA ATGAATG--- guinea_pig AAGCATGGTG TTTCCTTCTT GTTGTTTGCG TTGGCTCCAA ATAAATG--- rat AAATATGATG TTTCCTTCTT GTAGTTTTTA TTGGCTCAAC ATGAGCA--- mouse AAATATGATG TTTCCTTCTT GTAGTTTTTA TTGGCTCAAA GTGAGCA--- hedgehog AAA---GATG TTTCCT-CTT GTAGCTTTTA TTGGCACACA ATAAACA--- shrew AAATATGATA TTTCCTTCTT GTAGTTTTTA TTGGCTCAAA ATGAACA--- rfbat ------GATG TTTCCTTCTT GCAGCTTTTA TTGGCTCAAA ATGAATG--- cpbat AAA---GATG TTTCCTTTCT GTAGTTTTTA TTGGCTCAAA GTAAACA--- cat ------GATG TTTCCTTCTT GTAGTTTTTA TTGGCTCAAA ATGAGTG--- clouded_leopard ------GATG TTTCCTTCTT GTAGTTTTTA TTGGCTCAAA ATGAATG--- ferret ---------- ---------- ---------- ---------- ---------- dog ------GATG TTTCCTCCAT GTAGTTTTTA TTGGCTCAAA ATGATTG--- pig AAA---GATG TATCCTTCTT GTAATTTTCA TTGGCTCAAA ATGAATG--- muntjak_indian AAA---GATT T-TCCTTCTT ATAATTTTTG TTTGCTCAAA ATGAACT--- sheep ACA---GATT T-TCCTTCTT GTAATTTTTG TTCGCTCAAA ATGAACT--- cow aaa---GATT T-TCCTTCTT GTAATTTTTG TTCGCTCAAA ATGAACT--- horse AAA---GGTG TTTCCTCCTT GCAGTATTTA TTGGCTCAAA ATGAACA--- armadillo GAA-A-GATG TTTCCTTCTT CTAGTTTTTA TTGGCTCAAA ATGAACA--- elephant ------GATG TTTCCTTCTT GTAGTTTTTA TTGGCTTAAA ATGAACA--- tenrec ------GATG TTTCCTTCCT GTAGTTGTTA TTGGCTCAAA ATGAGCA--- wallaby ------GCTG CTTCCACCTT ACCGCGTTCA TTGGCTCCAA ATGAACAGGC monodelphis ------GCTG CTTCCTCTTC ACCATATTCA TTGGCTCCAA ATGAACAGGC opossum ------GCTG CTTCCTCTTC AGCACATTCA TTGGCTCCAA ATGAACAGGC platypus ------GCTG TTTCCTTCCC TCGTTTTTCA TTGACT-GCA GTGCACA--- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -CAAGCTTTA GTTCAAACAA AAGTGAGAGA GTGCAATTT- -AAATGAGGA chimp -CAAGCTTTA GTTCAAACAA AAGTGAGAGA GTGCAATTT- -AAATGAGGA gorilla -CTAGCTTTA GTTCAAACAA AAGTGAGAGA ATGCAATTT- -AAATGAGGA orangutan ---------- ---------- ---------- ---------- ---------- gibbon -CAAGCTTTA GTTCAAACAA AAGTGAGAGA GTGCAATTT- -AAATGAGGA colobus_monkey -CAAGCTTTA GTTCAAACAA AAGTGAGAGA GTGCAATTT- -AAATGAGGA vervet -CAAGCTTTA GTTCAAACAA AAGTGAGAGA GTGCAACTT- -AAATGAGGA baboon ---------- ---------- ---------- ---------- ---------- macaque -CAAGCTTTA GTTCAAACAA AAGTGAGAGA GTGCAACTT- -AAATGAGGA dusky_titi -CAAGCTTTA GTTCAAACAA AAGTGAGAAA GTGTAGTTT- -AAATGAGGA owl_monkey -CAAGCTTTA GTTCAAACAA AAGTGAGAGA GTGCAATTT- -AAATGAGAA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset -CAAGCATTA GTTCAAACAA AAGTGAGAGA GTGCGATTT- -AAATGAGGA galago -CAAGCTTCA GTTCAAACAA AAGTGACGGA GTGAAATTT- -AAATGAGGA mouse_lemur -CAAGCTTTA GTTCAAACAA AAGTGAGAGA GTGAAATTT- -AAATGAGGA lemur -CAAGC-TTA GTTCAAACAA AAATGAGAGA GTGAAAAtt- -AAATGAGGA rabbit -GAGGCTTTA GTTCAAACAA GGATAAGAGA ATGAAATGT- -AAATGG--- st_squirrel -CAGGCTTCA GTTCAAACAA AGGTGAGAGA GCGTGATTT- -AAATGAGGA guinea_pig -CAAGCTTTA GTTCAAACAA CGGT--GAGA GTGAAACCT- -AAATGAGGA rat -CAAGCTTTA GTTCAAACAA AGGTGAGAGA GTGAAATTT- -AAATGAGGA mouse -CAAGCTTTA GTTCAAACAA AGGTGAGAGA GTGAAATTT- -AAATGAGGA hedgehog -TAAGTTCTA GTTCAAACAA AGGTAAAAG- ----AATTT- -AGAAGAGGG shrew -CAAGCTGTA GTTCAATCAG AGGTGAGAGG ATGAAATCT- -AAATGGAGA rfbat -CAAGCTTTA GTTCAAACAA AGGTGAGAAA GCGAAATGT- -AAATGGAGA cpbat -CAAGCTGCA GTTCAAACAA AGGTGAGAGA GTCAACCTT- -AAATGGGGA cat -CAAGTGTTA GTTCAAACAA AGGTG--AGA GTGAAATTT- -AAA-GGGGA clouded_leopard -CAAGTGTTA GTTCAAACAA AGGTG--AGA GTGAAATTT- -AAA-GGGGA ferret ---------- ---------- ---------- ---------- ---------- dog -CAACTGTTC GTTCAAACAA AGGAG--AGA GTGAAAAAT- -AAATGGGAA pig -CAAGCTTTA GTTCAAACAA AGGTGAGAGA GTGAAATTT- -AAATGGAGA muntjak_indian -CAAGTTTTA GTTCAAACAA AGGTGAGGGA GTGAAATTT- -AAATGGGGA sheep -CAAGTTTTA GTTCAAACAA AGGTGGGAGA GTGAAATTT- -AAATGGAGA cow -CAAGTTTTA GCTCAAACAA AGGTGGGAGA GTGAAATTT- -AAATGGGGA horse -CAGGTTTTG GTTCAAACAA GGGTGAAAGA GTGAAATTT- -AAATGGTTA armadillo -CAGGCTTT- GTTCAAACAA AGTTGAGAAA GTGAAAATT- -AAATGAGGA elephant -CAAGCTTTA GTTGAAACAA AGGCAAAAAG GAGACGTTT- -AAATGAGGA tenrec -CAAACTTTA GTTCAAACAA AGGTGAAAGA GAAATGT--- -AAATGAGGA wallaby AGAAGGGTTA GTTCAAACAA AGGTGACAGT GTGACATTT- -AAATGAGGA monodelphis TGAAGTGTTA GTTCAAACAA AGGTGACAGT GTGACATTT- -AAAT----- opossum TGGAGTGTTA GTTCAAACAA AAGTGACAGT GTGACATTT- -AAAT-AGGA platypus -CAAG----- ---------- ----GCCAGA CTTCGTCTTG GCAGCCCAGA chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAGAGA-AA- -------AGG --AGATAAG- ---------- ----AAACTT chimp AAGAGA-AA- -------AGG --AGATAAG- ---------- ----AAACTT gorilla AAGAGA-AA- -------AGG --AGATAAG- ---------- ----AAACTT orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAGAGA-AA- -------AGG --AGATAAG- ---------- ----AAACTT colobus_monkey AAGAGA-AA- -------AGG --AGATAAG- ---------- ---AAAACTT vervet AAGAGA-AA- -------AGG --AGATAAG- ---------- ---AAAACTT baboon ---------- ---------- ---------- ---------- ---------- macaque AAGAGA-AA- -------AGG --AGATGAG- ---------- ---AAAACTT dusky_titi AAGAGA-AA- -------AAG --AGATAAG- ---------- ----AAACTT owl_monkey AAGAGA-AA- -------AGG --AGATAAG- ---------- ----AAACTT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AAGAGA-AA- -------AGG --AGATAAG- ---------- ----AAACTT galago AAGAGAAAA- -------AGG --AGCTGAG- ---------- ----AAACTT mouse_lemur -------GA- -------AGG --AGATAAG- ---------- ----AAACTT lemur -------GA- -------AGG --AGACAAG- ---------- ----AAACTT rabbit AACAGA-AC- -------AGG --AGATAAG- ---------- ----AAACTT st_squirrel AAGAGA-AA- -------AGG --AGATTAG- ---------- ----AAACTT guinea_pig AAGAGA-AA- -------AGG --AGACAAG- ---------- ----AAGCTT rat AAAAGA-AA- -------AGA --AGATAAG- ---------- ----AAAGTT mouse AAAAGA-AA- -------AGA --AGATAAG- ---------- ----AAAGTT hedgehog AAAAAA-GA- -------AGA --AGATAAA- ---------- ----TAACTT shrew A------TA- -------AGA --AGATAAG- ---------- ----AAACTT rfbat AAGAGA-AA- -------AGG --AGATAAG- ---------- ----AAACTT cpbat AAGAGA-AA- -------AAG --AGATAAG- ---------- ----AAACTT cat AAGACA-GA- -------AAT TCTGATCAAC AAACAAACAA ACAAAAACCC clouded_leopard AAGACA-GA- -------AAT TCTGATCAAC AAACAAACAA ACAAAAACCC ferret ---------- ---------- -------AA- -----AACAA AACAAAAACC dog AAGACA-GA- -------AGT TCTGATCAAT AAACAAACAA AACCAAACAC pig ATGAGA-AA- -------AAG --AGTTAAG- ---------- ----AAACCT muntjak_indian AAGAGA-AA- -------AAG --AGAT-AG- ---------- ----AAACTT sheep AAGAGA-AA- -------AAG --AGAT-AG- ---------- ----AAACTT cow AAGAGA-AA- -------AAG --AGAT-AG- ---------- ----AAACTT horse AAGAGA-AA- -------AGG --AAATCAG- ---------- ----AAACTT armadillo AAGAGA-AA- -------AGG --AGATATG- ---------- ----AAACTT elephant AAGAGA-AA- -------AGG --AGATATG- ---------- ----AAACTT tenrec AAGAGA-AA- -------GGG --AGATATG- ---------- ----AACCAT wallaby AAGAGA-AG- -------AGG --AAAGATG- ---------- ----AACCTT monodelphis AAGAGA-AG- -------AAG --AGAGATG- ---------- ----GACCTT opossum AAGACA-AA- -------AGG --AGAGATG- ---------- ----AACTTT platypus gaggta-agc tcactgcagg --caggg--- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG chimp TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG gorilla TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG orangutan ---------- ---------- ---------- ---------- ---------- gibbon TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG colobus_monkey TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG vervet TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG baboon ---------- ---------- ---------- ---------- ---------- macaque TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCTC TTGGGAGCAG dusky_titi TCCAACTGTG TTGA------ ACAGA-ACTT CTTTCTCCCC TTGGGAGCAG owl_monkey TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG galago TCCAGCTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG mouse_lemur TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG lemur TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCA TTGGGAGCAG rabbit TCCAACTGTG TTGA------ AGAGA-ACTT CTGTTTCCCT GTGGGAGCAG st_squirrel CCTAACTGT- -TGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG guinea_pig TCCAACTGT- -TGA------ ACAGA-ATGT CTGTGTTCCC TCAGGAGCAG rat TCCATGTGTG ATGA------ ACAGG-ACTT CTGTCTCCCC TTGGGAGCTT mouse TCCATGTGTG ATGA------ ACAGG-ACCT CTGTCTCCCC TTGGGAGCTT hedgehog TCCAACTGTG TTGA------ ACAGA-ATTT CTGTCCCCCC TCGGGAAAAG shrew TCCAGCAGTG TTGA------ ACAGG-ACTC CTTTGTCCCC TTGGGAGCAG rfbat TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TCGGGAGCAG cpbat TCCAACTGTG TGGA------ ACAGA-ATTT CTGTCTCCCC TAGGGAATAG cat CCAAACCACA GCCA------ GCTGATACCT CCCTGTCCCC TTGGGAATGG clouded_leopard CCAAACCACA GCCA------ GCTGATACTT CCCCGTCCCC TTGGGAATGG ferret CACAACCA-- ---------- GTTGATAACT CTCTCCCTGC TTGGGAGCAG dog CAAAACCAAA ACCACCAACA GATGACACAA CTCTCCCCCC TTGGGAGCAG pig TCCAACTGTG TCTA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGAAG muntjak_indian TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTACCC TTGGGAGCCC sheep TCCAACTGTG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG cow TCCAACTATG TTGA------ ACAGA-ACTT CTGTCTCCCC TTGGGAGCAG horse TCCAACTGTG T-GA------ ACAGA-ACCT CTGTCTCCCC TTGGGAGCAG armadillo TGCAACTGTG TTGA------ ACAGA-ACTT CCATCTCCCC TTGGAGCA-G elephant TCCAACTGTG CTGA------ ACAGA-ACTT CTGTCTCCCC TTGGAAAAAG tenrec TCTAACTGTG TGGA------ AGAGA-ACTT CTGGGTCCCC TTGGGAAA-G wallaby TCCAACTGTG TTGA------ ACAGT-ATTT CTGTTTCCTT TTGGGAGCAA monodelphis TCCAACTGTG TTGA------ ACAGT-ATTT CTGTTTCCCT TTGGGAGTGA opossum TCCAACTGTG TTGA------ ACAGA-TTTT CTGTTTCCCT TTGGGAGTGA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAGCAAGCCA GGGTAGACCA CAAGTACCAA TGAAAATACC TCATCCTATT chimp CAGCAAGCCA GGGTAGACCA CAAGTACCAA TGAAAATACC TCATCCTATT gorilla CAGCAAGCCA GGGTAGACCA CAAGTACCAA TGAAAATACC TCATCCTATT orangutan ---------- ---------- ---------- ---------- ---------- gibbon CAGCAAGCCA GGGTAGACCA CAAGAACCAA TGAAAATACC TCATCCTATT colobus_monkey CAGCAAGCCA GGGTAGACCA CAAGAACCAA TGAAAATACC TCATCCTTTT vervet CAGCAAGCCA GGGTAGACCA CAAGAACCAA TGAAAATACC TCATCCTTTT baboon ---------- ---------- ---------- ---------- ---------- macaque CAGCAAGCCA GGGTAGACCA CAAGAACCAA TGAAAATACC TCATCTTTTT dusky_titi CAGCAAGCCA GGATAGACCA CAAGAACCAA TGAAAATACC TCATCCTATT owl_monkey CAGCAAGCCA GGGTAGACCA CAAGAACCAA TGAAAATACC TCATCCTATT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset CAGCAAGCCA GGGTAGACCA CAAGAACCAA TGAAAATACC TCATCCTATT galago CCGCAAGCCA TGGTCGACCA CAAGAACCAA TGAAAATACC TCATCCTATT mouse_lemur CCGCAAGCCA TGGTAGACCA CAGGAACCAA CGAAAATACC TCATCCTATT lemur CTGCAAGCCA TGGTAGACCA CAGGAACCAA TGAAAATACC TCATCCTATT rabbit CAGCAAGCCA TGGTAGACCA CAGGAACCAG TGAAAATACT TCATCCTATT st_squirrel CA-CATGCCA TGGTTGACCA CAGGAACCAA TGAAAATACC TCATCCCATT guinea_pig CGTCCAGCAG GGGCAGACCA CAGGACCCAG TAAATATACC TCACCCTATT rat AAGCGAGCCG TGGTAGACCA CAGGAACCAA TGGAAATACC TCATCCTATT mouse AAGCGAGCTG TGGTAGACCA CAAGAACCAA TGGAAATACC TCATCCTATT hedgehog CAGTGATCCA TGGTAGACCA CAGGAACCAA TGAAAATACC TCATCTTATT shrew CAGCAAGCCT TGGTAGACCA CAGGAACCAA TAAAAATACC TCATCCTATT rfbat CAG-AAGCCG GGAGAGACAA CAGAAACCAA TGAAAACAAC TCATCTTATT cpbat CAGCAAGCCA TGATAGACCA CAGGAACCAA TGAAAATACT TCATCCTATT cat CAGCAAGCCA GGGCAGACCA CAAAAACCAA TGCAAATCCT TCATCCTATT clouded_leopard CAGCAAGCCA GGGCAGACCA CAAAAACCAA TGAAAATCCT TCATCCTATT ferret CAGCAAGCCA GGGCAGACCA TAGAAACCAA TGAAAATTCT TCGTCCTATT dog CAGCAAGCCA GGGTAGACCG CAGGAACCAA TGAAGATCCT TCATCCTATT pig CAGCAAGCCA TGGTAGACCA CAGGAACCAA CGAAAATACC TCAT-CTACT muntjak_indian CAACAAGCCA AAGTAGACCA CAGGAACCAA TGAAAATACC TCATGCTATT sheep CAACAAGCCA AAGTAGACCA CAGGAACCAA TGAAAATACC TCATGCTATT cow CAACAAGCCA AAGTAGACCA CAGGAACCAA TGAAAATACC TCATGCTATT horse CAGCAAGCCA TGGTAGACCA CAAGAACCAA TGAAAATACC TCATCCTATT armadillo GAGCAAGCCA TGGTAGACCA CAGGAATCAA TGAAATTACC TCCTCCTATT elephant CAGGAAGCCG TGGTAGACCA CAGCAATCAA TGAAAATACC TCATTTCATT tenrec CAGCAGGTCA TGGTAGACCA GAGGAACCAA TGGGAAGACC CTACTTTATT wallaby CAACGAACCA TGGTAGACCA CAAGAACTAA TGAAAATACC TCATCCTATT monodelphis CAACGAGCCA TGGTAGACCA CAAGAACTAA TGAAAATATT TTCTTCTATT opossum CAACGAGCCA TGGTAGACCA CAAGAACTAA TGAAAATACT TTATCCTATT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TATACTGGGT CACATTTCCC CATTTTTGAC AGATA-GAA- CCTTTGGAGA chimp TATACTGGGT CACATTTCCC CATTTTTGAC AGATA-GAA- CCTTTGGAGA gorilla TATACTGGGT CACATTTCCC CATTTTTGAC AGATG-GAA- CCTTTGGAGA orangutan ---------- ---------- ---------- ---------- ---------- gibbon TATACTGGGT CACATTTCCC CATTTTTGAC AGATG-GAA- CCTTTGGAGA colobus_monkey TATACTGGGT CACATTTCCC CATTTTTGAC AGATG-GAA- CCTTTGGAGA vervet TATACTGGGT CACATTTCCC CATTTTTGAC AGATG-GAA- CCTTTGGAGA baboon ---------- ---------- ---------- ---------- ---------- macaque TATACTGGTT CACATTTCCC CATTTTTGAC AGATG-GAA- CCTTTGGAGA dusky_titi TATCCTGAGT CACATTTCAC CATTTTTAAC AGATG-GAA- CCTTTGGAGA owl_monkey TATCCTGAGT CACATTTCAC CATTTTTGAC AGATG-GAA- CCTTTGGAGA squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TATCCTGAGT CACATTTCAC CATTTTTGAC AGATG-GAA- CCTTTGGAGA galago TATACTGGGT CATATTTCAC CATTTCTGAC AGATG-GAA- TCTTTGGAGA mouse_lemur TATATGAGGT CACATTTCAC CATTTCTGAC AGATG-GAA- TCTTTGGAGA lemur TATACGAGGT CACATTTCAC CATCTCTGGC AGATG-GAA- TCTTTGGAGA rabbit TATACCAGGT CACATTTCAC CATTTCTGAC AGAAG-GAA- CCTTTAGAGA st_squirrel TATACTGGGT CACATTTCAC CATTTCTGAC AGATG-GAA- CCTTAGGAAA guinea_pig TATACTGGGT TAGATCTCAC CATTTCTGAC AGATC-GAA- CCTTTGG--- rat TATGCTGGAT CACATTTCAC CATTTCTGAC AGATG-CCG- CCTTTGGGGA mouse TATGCTGGAT CACATTTCAC CATTTCTGAC AGATG-CAG- -CTTTGGGGA hedgehog TGAAGTGGAT CGCATTTCAC CATTTCTGAC AGATG-GAG- CCTTTGGAGT shrew TACACTGGAT CACATATCAG CCTTTCTGAC AGATG-GAA- CGTTTGGAGA rfbat TATACTGGAT CCCATTTCAC CATTTCTGAC AGATG-AAA- CTTATGGAGA cpbat TATACTGGTT CACATTTCAC TA----TGAT AGATG-GAA- CCTTTGGAGA cat TATACTAGAT CACATTTCAC CATTTCTGAC AGATG-GAA- ACTTTGGAGA clouded_leopard TATACTAGAT CACATTTCAC CATTTCTGAC AGATG-GAA- ACTTTGGAGA ferret TATACTAGAT CACATTTCAC CATTTCTGAC TGGTG-GAA- AGTTTGGAGA dog TACCCTGGAT CACATTTCAC CATTTCTGAC AGATG-AAA- ACTTTGGAGA pig T-CAATAGAT CACATTTCAC CATTTCTGAC AGATGAAAA- CCTTTGGAGA muntjak_indian TACAGTGGAT CACATTTCAC CATTTCTGAC AAATG-GAA- CCTTTGGAGA sheep TACAATGGAT CACAGTTCAC TATTTCTGAC AGATG-GAA- CCTTTGGAGA cow TACAATGGAT CACATTTTAC CATTTCTGAC AGATG-GAA- CCTTTGGAGA horse TATACTGGAT CGCATTTCAC AATTTCTGAC AGATG-GAA- CCTTTGGAGA armadillo AACACTGGCT CACATCTCAC CCTTTATGAC AGATG-GGG- CCTTTGGAGA elephant GATACTGGGC CACATCTCAC CCTTTCTGGA AGATG-GAG- CCTTTGTAGA tenrec GACACTGGGT TACATCTCAC CCCTTCTGGC AGACG-GAG- ACTTTGCAAA wallaby TACATTGGGT CACATCATAC AGATCCTGAC A-----GAGG CTTTTGCAAA monodelphis TATGTTGGGT CACATCATAC ATATTCTGAC AGATG-GAGG CTTTTGGAAA opossum TACGTTGGGT CACATCATAC ATATTCTGAC AGATG-GAGG CTTTTGGAAA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGAA-TATTA ATGACCATTG GGAGATGACA CTAGTCATTT AGGGAAACAC chimp AGAA-TATTA ATGACCATTG GGAGATGACA CTAGTCATTT AGGGAAACAC gorilla AGAA-TATTA ATGACCATTG GGAGATGACA CTAGTCATTC AGGGAAACAC orangutan ---------- ---------- ---------- ---------- ---------- gibbon AGAA-TATTA ATGACCATTG GAAGATGACA CTAGTCATTT AGGGAAACAC colobus_monkey AGAA-TATTA ATGAGCACTG GGAGATGACA CTAGTCATTT AGGGAAACAC vervet AGAA-TATTA ATGACCACTG GGAGATGACA CTAGTCATTT AGGGAAACAC baboon ---------- ---------- ---------- ---------- ---------- macaque AGAA-TATTA ATGACCACTG GGAGATGACA CTAGTCATTT AGGGAAACAC dusky_titi AAAA-TATTA ATGACCATTG GGAGATGATA CTAGTCATTT AGAGAATCAC owl_monkey AAAA-TATTA ATGACCATTA GGAGATGACA GTAGTCATTT AGAGAATCAC squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AAAA-TATTA ATGACCATTG GGAGACGACA CTAGTCATTT AGAGAATCAC galago AGAA-TATTA ATGACTGTTG GGATATGACA CTAGTCATTT AGGGAAACAC mouse_lemur AGAA-TATTA ATGACCATTG GGAGATGACA CTGGTCATTT AGGGAAACAC lemur AGAA-TATTA ATGACCATTG GGAGATGACA CTAGTCATTT AGGGAAACAC rabbit AGAATTACTA ATGACCACTG GGAGATGACA CCAGTCATTT AGGGAAA--- st_squirrel AGAA-TATTA ATGACCTCGG GGAGATGACA GTAGTCATTT TGGGAAACAC guinea_pig AGAA-TATTA GCGATCATTG AGAGATGACA GTAGTCATTT AAGAAAACAC rat AGAA-TATTA ACGACCG-TG GGGGAC-ACA GTAGTTGTTT GGAGACACAT mouse AGAA-TATTA ACGACCA-TG GGGGAC-ACA GTAGTTGTTT GGAGACACCC hedgehog GGAA-TATTA ATGACCATTG GGAGACGACA CTAGTCATTT AAGGAAACAT shrew GGAA-TAGTA ATGACCATGG GGAATTGATA TTCGACTTTT AGGGAAATAC rfbat AGAA-TATTA ATGACCACTG GGAGATGTCA CTAGTCATTT AGGGAAA--- cpbat AGAG-TATTA ATGAGCATTG GGAGATAGCA CTAGTCATTT AGGAGAATAC cat AGAA-TATTA AATACCATTC GGAGATGA-A CTGGTCATTT ACAGAAACAG clouded_leopard AGAA-TATTA ATGACCATTC GGAGATGA-A CTGGTCATTT ACAGAAACAG ferret AGAA-TATTA ATGACCACTG GGAGAGGACA CTGATCATTT AGAAAAACAA dog AGAA-TATTA ATGACCACTG GGAGATGACA CTGGTCATTT AGAGAAACTG pig AGAA-TATTA ATGACCATTG GGAGATAATA CTAGCCATTT AGGGAAA--- muntjak_indian AGAA-TATTA ATGACCACTG GGAGATGACA CTAGTCATTT AGGGAAACAC sheep AGAA-TATTA ATGACCACTG AGAAATGACA CTAGTCATTT AGGGAAACAC cow AGAA-TATTA ATGACCACTG AGAGATGACA CTAGTCATTT AGGGAAACAC horse AGAA-TATTA ATGACCATTG GGAGATGACA CTAGTCATTT AGGGTAACAC armadillo AGAA-GATTA ATGACCACTG GGAGATGACT CTAGTCATTT AGGA------ elephant AGAA-TATTA ATGACCATTG GGCAATGAGT CTAGTCATTT AGGGAAAAAC tenrec AGAA-TATTA ATGACCATTG GGAGAT--GC CTAGTCATTT AGGGTAACAC wallaby AGAA-TGTAA ATGACTAGGG AGAGGGGA-A TCCGCCATTT -GGGAGAGAC monodelphis AGAA-TATAA ATGACTAGTG AGAGGGGA-A TCTGCCATTT -GGGAGAGAT opossum GGAA-TATAA ATGACTAGTG AGAGGGGA-A TCTGCCACTT -GGGAGAGAT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TCAATAAATA G-GCAAATTT CTTTTTTAGG ATAATAAAGC TTA-ATT-CT chimp TCAATAAATA G-GCAA---- ---------G ATAATAAAGC TTA-ATT-CT gorilla TCAATAAATA G-GCAA---- ---------G ATAATAAAGC TTA-ATT-CT orangutan ---------- ---------- ---------- ---------- ---------- gibbon TCAATAAATA G-GCAA---- ---------G ATAATAAAGC TTA-ATT-CT colobus_monkey TCAATAAATA G-GCAA---- ---------G ATAATAAAGC TTA-ATT-CT vervet TCAATAAATA G-GCAA---- ---------G ATAATAAAGC TGA-ATT-CT baboon ---------- ---------- ---------- ---------- ---------- macaque TCAATAAATA G-GCAA---- ---------G ATAACAAAGC TTA-ATT-CT dusky_titi TCAATAAATA G-GCAA---- ---------- ---------- ---------- owl_monkey TCAATAAATA G-GCAA---- ---------G ATAATAAAGC TTA-ATT-CT squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset TCAATAAATA G-GCAA---- ---------G ATAATAAAGC TTA-ATT-CT galago TCAATAAATA A-GCGA---- ---------G ATAATAAAGC TTA-ATT-TT mouse_lemur TCAATAAATA A-GCAA---- ---------G ATAATAAAGC TTA-ATT-CT lemur TCAATAAATA A-GCAA---- ---------G ATAATAAAGC TTA-AAT-CT rabbit -CAATAAATA A-GCAA---- ---------G ACAATAAAGC TTA-ATT-CT st_squirrel ACAATGAATA A-GCAA---- ---------- ---------- ---------- guinea_pig ACAATAAATA A-GCAG---- ---------- ---------- ---------- rat GCAATAAATA G-CCAA---- ---------- ---------- ---------- mouse GCAATAAATA G-CCAA---- ---------- ---------- ---------- hedgehog TCAATAAATA A-GTAA---- ---------A ATAATAAACC TTA-GTT-TT shrew TCAATAAATG A-GCAA---- ---------T ATCATAAAGC TTA-ATTCTT rfbat -CAATAATTA A-GTAA---- ---------G ATAATTAAGC TTA-ATT-CT cpbat TCAATAATGA A-ATAA---- ---------G ATAATAAAAC TTA-ATT-CT cat T-----AATA A-GCAA---- ---------G TTAATAAAGA GTA-ATT-CG clouded_leopard T-----AATA A-GCAA---- ---------G TTAATAAAGA GTA-ATT-CT ferret T-----AATA AGGCAA---- ---------G TTAATAAAGC TTA-ACT-CT dog T-----AATA A-GCAA---- ---------G TTAATGAATC TTA-ATT-CT pig -CAATAAATA A-GCAA---- ---------G ATAATAACGC TTA-ATT-CT muntjak_indian TCAATAAATA A-GCAA---- ---------G ATGATAAAAT TTA-ATT-TC sheep TCAATAAATA A-GCAA---- ---------G ATGATAAAAA TTA-ATT-TC cow TCAATAAATA A-GCAA---- ---------G ATGATAAAAC TTA-ATT-TC horse TCAATAAATA A-G------- ---------G A--GTAAAGC TTA-ATT-AT armadillo -AAATATATA A-GCAA---- ---------G ACAATAAACC TTA-ATG-TT elephant CAAACAAATA A-GCAA---- ---------G ACAATAAAGT TTA-ATT-CT tenrec CAAATAAATA A-GCAA---- ---------G CCCATAAAGT TTAGATT-CT wallaby TAAGTAAATA A-ACAA---- ---------G ACAATAAAGT TTA-ATT-CT monodelphis AAAGTAAATA A-GTAA---- ---------G ACAACAAGGC TTA-ATA-TT opossum AAAGTAAATA A-ACAA---- ---------G ATCACAAAGC TTA-ATA-TT platypus ---------- ---------- ---------g atAATGATGT TTG-TTT-CT chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GTAaaaGTCA AAAATGTTAA ATTAAA-AAA ATTGGAAAGT A--GGAAAAG chimp GTA------- ---------- ATTAAA-AAA ATTGGGAAGT A--GGAAAAG gorilla GTA------- ---------- ATTTAA-AAA ATTGGAAAGT A--GGAAAA- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTA------- ---------- ATTAAA-AAA ATTGGAAAGT A--TGAAAAG colobus_monkey GTA------- ---------- AATAAG-AAA ATTGGAAAGT A--TGAAAAG vervet GTA------- ---------- ATTAAG-AAA ATTGGAAAGT A--TGAAAAG baboon ---------- ---------- ---------- ---------- ---------- macaque GTA------- ---------- ATTAAG-AAA ATTGGAAAGT A--TGAAAAG dusky_titi ---------- ---------- ATTAAG-AAA ATT-GAAAGT A--CGAAATG owl_monkey GTA------- ---------- ATTAAG-AAA ATTGGAAAGT A--TGAAAAG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset GTA------- ---------- ATTAAG-AAA ATTGGAAAGT A--TGAAAAG galago GTA------- ---------- ATTAAC-AAA ATTAGGAAGT A--TGAAAGG mouse_lemur TTA------- ---------- ATTAAG-AAA ATTCAAAAGT A--TGAAAAG lemur GTA------- ---------- ATTAAG-AAA ATTAGAAAGT A--TGAAAAG rabbit GAG------- ---------- ATTAAG-AAA GTTGGGAAGT A--TGAAAAG st_squirrel ---------- ---------- ATTAAG-AAA ATTGGAAAGT A--TGAAAAG guinea_pig ---------- ---------- ATTAAG-AAA ATTGGAAAAT C--TGAAAAG rat ---------- ---------- ATTAAGAAAA ACTGGAAGGT A--TGAGAAG mouse ---------- ---------- ATTAAG-AAA ACTGGAAAGT A--TGAAAAG hedgehog ATA------- ---------- ---------- ATTGGAAAGT ---TGAAAAG shrew ACA------- ---------- ATTAAG-AAA GTTGAAAGTT A--TGTAAAG rfbat GTA------- ---------- ---------- ATTGGAAAGT A--TGAAAAC cpbat ATA------- ---------- ---------- ATGGGAAATT A--TGAAAAG cat GTA------- ---------- ---------- ATTGGAAAGT T--TGAAAAA clouded_leopard GTA------- ---------- ---------- ATTGGAAACT T--TGAAAAG ferret GTA------- ---------- ---------- ATTGGAAAGT A--TGAAAAG dog GTA------- ---------- ---------- ATTGGAAAAT A--CGAAAA- pig GTA------- ---------- ---------- ATTAGAAAAT A--AGAAAAG muntjak_indian T--------- ---------- ---------- ATTGGAAAAT A--TGAAAAG sheep T--------- ---------- ---------- ATTGGAAAAT A--TGAAAAG cow T--------- ---------- ---------- ATTGGAAAAT A--TGAAAA- horse GTG------- ---------- ---------- ATTGGAAAAT A--TGGAAAG armadillo GTA------- ---------- ATTAAG-AAA ATTGGAAAGT A--TGAAAAG elephant GTA------- ---------- ATTAAG-AAA ATTGGAAAGT A--TGAAAAG tenrec GTA------- ---------- ---------- ATTGGAAAGT A--TGAGAAA wallaby GTA------- ---------- ACCAAG-AAA ATTGGAAAAA A-TGAAAAAG monodelphis ATA------- ---------- ACCAAG-AAA ATTGGAAAAA AATGAAAAAA opossum ATA------- ---------- ACCAAG-AAA ATTGGAAAAA ATGAAAAAAA platypus TC-------- ---------- ATTAAT-GAG GCAAAAAAGA A--GGGAAAA chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GAAAATTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAAT-T chimp GAAAATTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAAT-T gorilla AAAAATTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAGT-T orangutan ---------- ---------- ---------- ---------- ---------- gibbon GAAAATTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCATT-T colobus_monkey GAATATTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAAT-T vervet GAATATTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAAT-T baboon ---------- ---------- ---------- ---------- ---------- macaque GAATATTAA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAAT-T dusky_titi GAAAATTGA- -----AGAAT -AGACACAAG ATGG-AC-AT CCATCAGT-T owl_monkey GAAAATTAA- -----AGAAT -AAACACAAG ATGG-ACAAT CCATCAAT-T squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset GAAAATTGA- -----AGAAT -AAACACAAG ATGG-ACAAT CCATCAAT-T galago GAAAATCGA- -----AGAAT -AAACACA-A ATGG-AAAAT TCATCAGT-T mouse_lemur GAAAATTGA- -----AGAAT -AAACACACG ATGG-AAAAT TCATCAAT-T lemur GAAAACTGA- -----AGAAT -AAACACACA ATGG-AAAAT TCATCAAT-T rabbit GAAAATTGA- --GAA---AT -AAACACAAG ATGG-AAAAT CCGTCAAC-T st_squirrel GAAAATGGAA AA------AA -AAACACAAG ATGG-AAAAT CCATCAAT-T guinea_pig GAAAAGTGA- --------AT -AAACACAAG ATGG-AAAAT CCATCAAT-T rat GAAAACTGA- ---------T -AAACACAAG ATGG-AAAA- TCAGCAGT-T mouse GAAAACTGA- ---------T -AAACACAGG ATGG-AAAA- CCAGCAGT-T hedgehog GAGAACTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAAT-T shrew GAAAATTGA- -----AGAAA -TAACACAAG ---------- ---------- rfbat GAAAACTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAGT-T cpbat GAAAATTGA- -----AGAAT -AAGTATAAG ATGC-AAAAT CCATCAAG-T cat GAAAATAGA- -----AAAAT -AAACACAAG ATGG-AAAAT CCATCATT-T clouded_leopard GAAAATAGA- -----AAAAT -AAACACAAG ATGG-AAAAT CCATCATT-T ferret GAAAATAGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAG--- dog -----TAGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAGT-T pig GAAAACTAA- -----AGACT ---------- ATGG-AAAAT CCATCA---- muntjak_indian GAAAATTGA- -----AGAAT -AAACAAAAG ATGGAAAAAT CCATCAAT-T sheep GAAAATTGA- -----AGAAT -AAACAAAAG ATGGAAAAAT CCATCAAT-T cow AAAAATTGA- -----AAAAT -AAACAAAAG ATGGAAAAAT CCATCAAT-T horse GAAAATTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCAAC-T armadillo GAAAATTGA- -----AGAAT -AAACACAAG ATGG-AAAAT CCATCCAT-T elephant GA------A- -----AGAAT -AAACACAAG ATGG-GAAAT CCATCAAC-T tenrec GA------A- -----AGACT -AGACACAGG ATGG--AAAT CCATCTGG-T wallaby GAAAAGTGA- -----ACA-- -TAACACAGG ATGG-AAACC CCATCAAT-T monodelphis GAAAACTGA- -----GCA-- -TAACATAGG ATGG-AAACC CTATCAATCT opossum GAAAACGGA- -----ACA-- -TAAC--AGG ATGG-AAACC CTATCATTTT platypus GGATATTAA- -----AAAAC AAAGCAAAAT ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGTCTGTCAC AAATTTCATG ATTTT-TATT ----AAGAA- ---CAGTTA- chimp AGTCTGTCAC AAATTTCATG ATTTT-TATT ----AAGAA- ---CAGTTA- gorilla AGTCTGTCAC AAATTTCATG ATTTT-TATT ----AAGAA- ---CAGTTA- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AGTCTGTCAC AAATTTCATG ATTTT-TATT ----AAGAA- ---CAGTTA- colobus_monkey AGTCTGTCAC AAATTTCATG ATTTTCTATT ----AAGAA- ---CAGTTA- vervet AGTCTGTCAC AAATTTCATG ATTTT-TATT ----AAGAA- ---CAGTTG- baboon ---------- ---------- ---------- --------A- ---CAGTTA- macaque AGTCTGTCAC AAATTTCATG ATTTT-TATT ----AAGAA- ---CAGTTA- dusky_titi AGTCTGTCAC AAATTTCATA ATTTT-TATT ----AAGAA- ---CAGTTA- owl_monkey ATTCTGTCAC AAATTTCATA ATTTT-TATT ----AAGAA- ---CAGTTA- squirrel_monkey ---------- ---------- ---------- --------A- ---CAGTTA- marmoset ATTCTGTCAC AAATTTCCTA ATTTT-TATT ----AAGAA- ---CAGTTA- galago AGTCTGCCAC TGATCTTACG ATTTT-TACT GAGTAACAGT CTCCAGTTA- mouse_lemur AGTCTGTCAT AGATCTTATA ATTTT-TATT G---ACTAGT ATCCAGTTA- lemur AGTCTGTCAT AGATCTTATA ATTTT-TATT G---ACCAGT ATCCAGTTA- rabbit AGTCTGTCAC AAATTTCTTA ATTTT-TATT TAGCAACAAT GTCCAGTTA- st_squirrel AGTCTGTCAC AGATTTAATA ATGTT-TATT GAGTAATAAC ATCCAGTTA- guinea_pig AGTCTGTCCT AGATTTCGGA ACCTT-TACT GAGCAACAAT GTCCAGTTA- rat GGTCTGTCAT AA-------- --TTT-TATT GAGCAA-AAT GTCCAGCTA- mouse GGTCTGTCAT AA-------- --TTT-TATT GAGCAA-AAC ATCCAGCTA- hedgehog AGTGACACA- -GACTACAGA AATTT-TATT GAGCAGT--- ---------- shrew --TCTATCA- -GATTTCAGA A--TT-TATT GAGGTATA-- ----ACTTA- rfbat AGTGTGTCAC AGACTTTGTA ATTGG-TATT CAGCAGCAAT GTCCACTCA- cpbat AGTCTGTCAT GGATTTCATA ATTTT-TATT AAGCATCAGT GGCCAGTTA- cat AGTCTGTTAT ATATTTCACA ATTTT-TACT GAGCAGCAAT GTCTAGTTA- clouded_leopard AGTCTGTTAT ATATTTCACA ATTTT-TACT GAGCAGCAAT GTCTAGTTA- ferret --TCTGTTAT ATATCTCACA ATTTT-TACT GAGCAACA-- ---------- dog AGTCTGTTAT ATATTTCACA ATTTT-TATT GAGCAACAAT GTCTAGTTA- pig --TCTGTCAC AAATTTCATA ATTTT-TATT AAGCAATAAT GTCCAGTTA- muntjak_indian AGTCTGTCAC AGATTTCATA AGTTT-TATC AAGCAACAAG ATTCAGTTA- sheep AGTCTGTCAC AGATTTCATA AGTTT-TATT AAGCAACAAG ATCTAGCTA- cow AGTCTGTCAC AGATTTCATA AGTTT-TATT AAGCAACAAG ATCCAGTTA- horse GGTCTGTCAC AGATTTCATA A---T-TCTT AAGCAACGAT GTCCAGTCA- armadillo AGTCTGTCAC TGATTTCATC ATTTT-TATT TAGTAACATT TTCCAGCTA- elephant AGTCTGTCAT TGATCTCACA ATTTT-TATT GAGCAATAAT ATCCAGTTA- tenrec AGTCTACCAC TGATTTCACA ATTTT-TATT GAGCAATAAA GTCCAGTTGT wallaby AGTCTCTTTC AGGTACAAT- ---------- ---------- ---------- monodelphis AG-------- ---------- ---------- ---------- ---------- opossum AGACTCTtcc aaatacaat- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human --AACCCT-- ---------C -TATTTGTCC TTGAGTTTTC CTCTTGCCTA chimp --AACCCT-- ---------C -TATTTGTCC TTG-GTTTTC CTCTTGCCTA gorilla --AACCCT-- ---------C -TATTTGTCC TTG-GTTTTC CTCTTGCCTA orangutan ---------- ---------- ---------- ---------- ---------- gibbon --AACCCT-- ---------C -TATTTGTCC TTG-GTTTTC CTCTTGCCTA colobus_monkey --AACCCT-- ---------C -TATTTGTCC TTG-GTTTTC CTCTTGCCTA vervet --AACCCT-- ---------C -TATTTGTCC TTG-GTTTTC CTCTTGCCTA baboon --AACCCT-- ---------C -TATTTGTCC TTG-GTTTTC CTCTTGCCCA macaque --AACCCT-- ---------C -TATTTGTCC TTG-GTTTTC CTCTTGCCTA dusky_titi --AACCCT-- ---------C -TATTTGTCC TTG-GTTTTC CTCTTGCCTA owl_monkey --AATCCT-- ---------C -TATTTGTCT TTG-GTTTTC CTCTTGCCTA squirrel_monkey --AACCCT-- ---------C -CATTTGTCC TTG-GTTTTC CTCTTGCCTA marmoset --AACCCT-- ---------C -TATTTGTTC TTG-GTTTTC CTCTTGCCTA galago --AAAACT-- ---------C -TATTTGTGC TTG-TTTTTC CTTTTGCCTA mouse_lemur --AAAACT-- ---------C -TGTTTGTCC TCG-TTTTTC CTCTTGCCTA lemur --AAAACT-- ---------C -TATTTGTCC TCG-TTTTTC CTCTTGCCTA rabbit --AAAACT-- ---------C -TATTTGTCC TTG-TTTTTC CTCTTGCCTA st_squirrel --AAAGCT-- ---------T -TATTTGTCC ATG-TTTTTC CTCTTGCCTA guinea_pig --AACTCAGC TAGTGCTTGG -CGTTTGCCC ---------- --CTTGCCTG rat --AAATCT-- ---------C -TGTTTGCCT G--------- --CTAGTCTA mouse --AAATCA-- ---------C -TGTTTGCCC G--------- --CTAGCCTA hedgehog ---------- ---------- ---------- ----ATTTTC CTCTTGCTTC shrew --AAAGCA-- ---------C -CATTTGTCC TTG-ATTTTC CTCTTGCTTC rfbat --AAGTCT-- ---------C -TGATTGTCC TTG-TTTTCC CTCTTGCCTC cpbat --AAATTT-- ---------C -TGTTTGTTC TTG-GTTTTC CTCTTGCTTT cat --AAAACT-- ---------C TTATTTGTCC -----TTTTC CTCTTGCTTC clouded_leopard --AAAACT-- ---------C TTATTTGTCC -----TTTTC CTCTTGCTTC ferret ---------- ---------- ---------- ---------- ---------- dog --AAAACT-- ---------C -TATTTGTCC -----TTTTC CTCTTGCCTC pig --AAAACT-- ---------C -TATTTGTCC -----TTTTC CTCTTGTCTC muntjak_indian --AAAATT-- ---------C -TATTTGTCC -----TTTTC CGCTTGTTTC sheep --AAAATT-- ---------T -TATTTGTCC -----TTTTC CGCTTGTCTC cow --AAAATT-- ---------C -TATTTGTCC -----TTTTC CGCTTGTCTC horse --AAAACT-- ---------C -TATTTGTCC -----TTTTC CTCTTGCCTC armadillo --AAAACT-- ---------G -TTTTTGTTC TTG-GTTTTC CTCTTGCCTA elephant --AAAACT-- ---------C -TATTTGTCT TTG--TTTTC CTCTTGTCTA tenrec TCAATACT-- ---------C -TATTTGTCC TTG--TTTTC CTCTTGTCTA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTT chimp AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTC gorilla AGTTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTC orangutan ---------- ---------- ---------- ---------- ---------- gibbon AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTC colobus_monkey AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTC vervet AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTC baboon AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTC macaque AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTC dusky_titi AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-CCTTT GATTTTTCTC owl_monkey AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT GATTTTTCTC squirrel_monkey AATTCTTCCT CTAGTTCCGA TGCTACCCAC CCAG-TCTTT GATTTTTCTC marmoset AATTCTTCCT CTAGTTCCGA CTCTACCCAC CCAG-TCTTT AATTTTTCTC galago AATTCTTCCT CTAGTTCCAA TTCTACCCAC CCAG-TCTTT GATTTTTCTC mouse_lemur AATTCTTCCT CTAGTTCCAG CTCTACCCAC CCAG-TCTTT GATTTTTCTC lemur AATTCTTCCT CCAGTTCCAA CTCTACCCAC CCAG-TCTTT GATTTTTCTC rabbit AATTCTTCCT CTAGTTCCGG CTCTACCCAC CCAG-TCTTT GAT-TTTCTC st_squirrel AATTCTTCCT CTAGTTCCGG CTGGACCCAC CCAGTCTTTT GATTTTTCTC guinea_pig CATTCCTCCT CCGGTTCCGG CTCTACCCAC CCAG-TCTTT GATTTCTCTC rat GATTCTTCCT CTGGTTCTAA CTCTACCCAC CCAG-ATTTT GACGTTTCTC mouse GAGACATTCT CTGGTTCTGA CTCTACCCAC CCAG-CTTTT GACGTTTCTC hedgehog AATTCCTCCT CTAATTCCGG CTCCACCTAC CCAC-TCTTT GATACTTCTC shrew AATTCTTCCT CTAATTCCGG CTCTACCCAC CCGC-TCTTT GATTTTTCTC rfbat AATTCTTTCC TTAATTCCGG CTCTACCCAC CCAG-TCTTT GATTTTTCTC cpbat AATCCTTCCT CCAATTCCAG CTCTACCCAA TCAG-TCTTT GATTTTTCTC cat AATTCTTCCT CTAATTCCGG CTCTACCCAC CCAG-TCTTT GATTTTTCTC clouded_leopard AATTCTTCCT CTAATTCCGG CTCTACCCAC CCAG-TCTTT GATTTTTCTC ferret ---------- ---------- ---------- ---------- ---------- dog AATTCTTCCT CTAATTCTGG CTCTACCCAC CCAG-TCTTT GATTTTTCTC pig AATTCTTCCT CTAATTCCGG CTCTACCCAC CCAG-TCTTT GATTTTTCTC muntjak_indian AATTCTTCCT CTAATTCCGG CTCTATCCAC CCAG-TCTTT GATTTTTCTC sheep AATTCTTCCT CTAATTCCGG CTCTATCCAC CCAG-TCTTT GATTTTTCTC cow AATTCTTCCT CTAATTCCGG CTCTATCCAC CCAG-TCTTT GATTTTTCTC horse AGTTCTTCCT CTCATTCCGG CTCTACCCAC CCAG-TCTTT GATTTTTCTC armadillo AATTCTTCCT CTAATTCCGG CCCTGCCCAC CCAT-TCTTT GATTTTTCTC elephant AATTATT-CT CTAATTCCGG CTCTCCCCAC CCAT-TCTTT GA-TTTTCTC tenrec AATTATTTCT CCATGTCCGG CTTTCCCCAC CCAG-TCTTT GA-TTTTCTC wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATGTGT GATGATAGTG chimp ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATGTGT GATGATAGTG gorilla ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATGTGT GATGATAGTG orangutan ---------- ---------- ---------- ---------- ---------- gibbon ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATGTGT GATGATAGTG colobus_monkey ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATGTGT GATGATAGTG vervet ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATATGT GATGACAGTG baboon ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATGTGT GATGATAGTG macaque ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATGTGT GATGATAGTG dusky_titi ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GAGGATAGTA owl_monkey ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GAGGATAGTG squirrel_monkey ACAGAACTCT TTGCTTACCA AACAATGTGC CTTTTTGTGT GATGATAGTG marmoset ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GATGATAGTG galago ACAGAACTCT TTGCTTACCA CACAATGCGT CTTTTTGTGC GATGATGGTG mouse_lemur ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTATGTGT GATGATGGTG lemur ACAGAACTCT TTGCTTACCA CACAATGCGC CTTTATGCAT GATGATGGTG rabbit ACAGAACCCT TTGCTTACCA CACAATGAGC CTTTCTGTGG GATGATGGTG st_squirrel ACAGTACCC- TTGCTTACCA CACAAAGTGC CTTTTTGTGT GATGATGGTG guinea_pig ACAGAACAC- TTGCTTACCA CACAAAGCGC CTTTTTGTAC GATGATGGTG rat ACAGCACGT- TTGCTTACAA CACAATGCAC TTCTCTGT-- GATGACCATG mouse ACAGCACGT- TGGCTTCCCA CACAATGCAC TTCTGTGT-- GGTGATCTCG hedgehog ACAGAACCCT TTGCTTACCA CACAATGTGT CTTTTTGTGT GATGATAGTG shrew ACAGAACCCT TTGCTTACCA CACAATGTGT CTTTTTGTGT AATGATGGTG rfbat AGAGAACACT TTGCTCACCA CACAATGTGC CTTTTTGTGT GATGATGGTG cpbat ACAGAACCCT TTGCTTACCA CACAATGTGC TTTTTTGTGT GATGATGGTG cat ACAGAACGCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GATGATGGTG clouded_leopard ACAGAACCCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GATGATGGTG ferret ---------- ---------- ---------- ---------- ---------- dog ACAGAACCCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GATGATGGTG pig ACAGAAGCCT TTGCTTATCA CACAATATGC CTTTTTATGT GATGATGGTG muntjak_indian ACAGAACCCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GATGATGGTG sheep ACAGAACCCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GATGATGGTG cow ATAGAACCCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GATGATGGTG horse ACAGAACTCT TTGCTTACCA CACAATGTGC CTTTTTGTGT GATGATAGTG armadillo ACAGAATGCT TTGCTTACCA CACAATGTGC CTTTTTGTGT AATGATGGTG elephant ACAGAGTCCT TTGCTTACCA CACAATGGGC CTTTCTGTGT AATGATGGTG tenrec ACAGAATCCT TT----ACCA CACAATGAGC CTTTCTGTGT ACTGATGGTG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GACAGATGTG A-TATTTCCA ATGGATTCTA TCTTGCTTGC TTATTT---A chimp GACAGATGTG A-TTTTTCCA ATGGATTCTA TCTTGCTTGC TTATTT---A gorilla GACAGATGTG A-TTTTTCCA ATGGATTCTA TTTTGCTTGC TTATTT---A orangutan ---------- ---------- ---------- ---------- ---------- gibbon GACAGATGTG G-TTTTTCCA ATTGATTCTA TTTTGCTTGC TTATTT---A colobus_monkey GACAGATGTG A-TTTTTCCA ATGGGTTTTA TTTTGCTTGC TTATTT---A vervet GACAGATGTG A-TTTTTCCA ATGGGTTTTA TTTTGCTTGC TTATTT---A baboon GACAGATGTG A-TTTTTCCA ATGGGTTTTA TTTTGCTTGC TTATTT---A macaque GACAGATGTG A-TTTTTCCA ATGGGTTTTA TTTTGCTTGC TTATTT---A dusky_titi GACAGATGTG A-TTTTTCCA ATGGATTCTA TTTTGCTTGC TTATTT---C owl_monkey GAAAGATGTG A-TTTTTCCA ATAGATTCTA TTTTGCTCGC TTATTT---A squirrel_monkey GAAAGATGTG A-TTTTTCCA ATGGATTCTA TTTTGCTCGC TTATTT---A marmoset GAAAGATGTG A-TTTTTCCA ATGGATTCTA TTTTGCTCGC TTATTT---A galago GACAGATGTG ATTTTTTCCA ATGGATTCTA TTCTGCTTGC TTATTT---A mouse_lemur GACAGATGTG A-TTTTTCCA ATGGATTCTA TTTTGCTTGC TTGTTT---A lemur GACAGATGTG A-TTTTTCCA ATGGATTCTA TTTTGCTTGC TTATTT---A rabbit GACAGATGTG A-TTTTC-CA ATGGGTTCTA TTTTGCTTGC TTATTT---A st_squirrel GACAGATGTA C-TTTTTCCA ATGGCTTCTA TTTTGCTTGC TTATTT---A guinea_pig GACAGATGTG C-TTTTTCCA ACGGGTTCTA TTTTACTTGC TTATTT---A rat GGCAGATGTG C-TTTTT--A ATTGGTCCTA TTCGGCTTGC TTATTTATTA mouse GACAGATGTG C-TTTTTGCA ATGGGTCCCA TTCTGCTTGC TTATTTACGA hedgehog GACAGATGTG G--TTTTTCA ATGGGTTCTA TTTTGCTTGC TTATTT---A shrew GACAGATGTG A--TTTTCCA ATGAGTTCTA CTTTGCTTGC TTATTT---G rfbat GGCAGATGTG A-TTTTTCCA GTGGGTTCTA TTTTGCTTGC TTACTT---A cpbat GACAGATGTG A-TTTTTCCA ATGAGTTCTA TTTTGCTTGC TTATTT---A cat GACAGATGTG A--TTTTCCA ATGGCTTCTA TTTTACTTGC TTATTT---A clouded_leopard GACAGATGTG A--TTTTCCA ATGGCTTCTA TTTTACTTGC TTATTT---A ferret ---------- ---------- ---------- ---------- ---------- dog GACAGATGTG A--TTTTCCA ATGAGTTCTA TTTGGCTTGC TTATTT---A pig GACAGATGTG A--TTTTCCA ATGAGCTCTA TTTTGCTTGC TTATTT---A muntjak_indian GACAGATGTG G-TTTTTCCA ATGAGTTCTC TTTTGCTTAC TTATTT---A sheep GACAGATGTG G-TTTTTCCA ATGAGTTCTA TTTTGCTTAC TTATTT---A cow GACAGATGTG G-TTTTTCCA ATGAGTTCTA TTTTGCTTAC TTATTT---A horse GACAGATGTG A--TTTTCCA ATGGGTTCTA TTTTGCTTGC TTATTT---A armadillo GACAGATGTG A--TTTTCTA GTGGGTTCTA TTTTGCTTGA TTATTT---A elephant GACAGATGTG A--TTTTCCA ATGGGTTCCA TTTTGCTTCC TTATTT---A tenrec GACAGATGTG A--CTTTCCA ATGGGCTCCA TTTTGCTTAC TTAGTT---A wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TGTATTGCTC AGACTTCAGC CTTTAGTCTG AAACAAAATA AGTTAGAACG chimp TGTATTGCTC AGACTTCAGT CTTTAGTCTG AAACAAAATA AGTTAGAATG gorilla TGTATTGCTC AGACTTCAGT CTTTAGTCTG AAACAAAATA AGTTAGAACG orangutan ---------- ---------- ---------- ---------- ---------- gibbon TGTATTGCTC AGACTTCAGT CTTTTGTCTG AAACAAAATA AGTTAGAACA colobus_monkey TGTATTGCTC AGACTTCA-- -----GCCTG AAACAAAATA AGTTAGAACG vervet TGTATTGCTC AGGCTTCA-- -----GTCTG AAACAAAATA AGTTAGAACG baboon TGTATTGCTC AGACTTCA-- -----GTCTG AAACAAAATA AGTTAGAACG macaque TGTATTGCTC AGACTTCA-- -----GTCTG AAACAAAATA AGTTAGAACG dusky_titi TGTATTCCTC AGACTTCAGT CTTTAGTCTG AAACAAAATA AGTTAGAAAG owl_monkey TGCATTCCTC AGACTTCAGT CTTTAGTCTG AAACAAAATA AGTTAGAACG squirrel_monkey TGCATTCCTC AGACTTCAGT CTTTAGTCTG AAACAAAATA AGTTAGAACG marmoset TGCATTCCTC AGACTTCAGT CTTTAGTCTG AAACAAAATA AGTTAGAACG galago TGTATTCCTC AGACTTCAGT CTTCGGGCTG GAATGAAATA AATTAGGACA mouse_lemur TGTATTCCTC AAACTTCAGT CTTTGGTCTG GAAAAAAATA AATTAGGACA lemur TGTATTCCTC AAACTTCAGT CGTTGGTCTG GAACAAAATA AATTAGGACA rabbit TGTATTCCCC AGACTGCAGT CTTTAGTCTG GAACAAAATA AATTA-AACA st_squirrel TGTATTCCTG AGACTTCAGT CTTCAGTCTG GTACAAAATA AATTAGGACA guinea_pig TGTATTTGGA AGATTTCAGT CTTTAGTCCT GAAGAGAATA AATCAGAACA rat TGGATTCCTC TGACTTCAGT CTTTAGTCTG GAACGAAATA AATTGGAGCA mouse TGTATTCCTC CGACTTCAGT CTTTAGTCTG GAACAAAATA AACTGGAGCA hedgehog TGTATTTTTC AGATTTCAAT TTTTAGCCTG GAACAAAATA AATCAGGACA shrew TATATTCTTC AGACTTTGGT CTTTAGCGTG CAACAAAATA AATCCACTAA rfbat TGTATTCTCC AGGCTTCAGT CTCTAGTTTG GAACAAAATA AATCAGGACA cpbat AGTATTCTTT AGACTTTAGT CTTTCATCTG GAACAAAATT AATCAGGACA cat TATATTCTTG AGACTTCAGT CATTAGTCTG GAACAAAATA AATCAGGATA clouded_leopard TATATTCTTG AGACTTCAGT CATTAGTCTG GAACAAAATA AATCAGGATA ferret ---------- ---------- ---------- ---------- ---------- dog TGCATTCTTG AGACTTCAGT CGTTAGTCTG GAACAAAATA AATCGGGATA pig TGTATTCTTC AGACTTCAGC CTTTGGTCTG GAATAAAATT AATCAGGAC- muntjak_indian TGTATTCTTC AGACTTCAGT CTGCAGTCTG GAACAAAATA AATAAGGACA sheep TGTATTCTTC AGACTTCAGT CTGCAGTCTG GAACAAAATA AATAAGGACA cow TGTATTCTTC AGACTTCAGT CTGCAGTCTG GAACAAAATA AATAAGGACA horse TGTATTCTTC AGACTTTAGT CTTTAGTCTG GAACAAAATA AATCAGGACA armadillo CATATTCTTC AGACTTCAGT CTCTAGTCTC TTA------A CACTGGGACA elephant TGTATTCATC AGATTTCAGC CTTTGGTCTG GAACAAAATA AATTAGGACA tenrec TGTATTCACC AGAAGTGAGC CTTCAGTCTG GGACAAAATA AATTAGGACA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTCATTGCTT CTA-ATTTAT ATTTGT--GT TC-------A GAGCAAACAA chimp TTCATTGCTT CTA-ATTTAT ATTTGT--GT TC-------A GAGCAAACAA gorilla TTCATTGCTT CTA-ATTTAT ATTTGT--GT TC-------A GAGCAAACAA orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTCATTGCTT CTA-ATTTAT ATTTGT--GT TC-------A GAGCAAACAA colobus_monkey TTCATTGCTT CTC-ATTTAT ATTTGT--GT TC-------A GAGCAAACAA vervet TTCATTGCTT CTC-ATTTAC ATTTGT--GT TC-------A GAGCAAACAA baboon TTCATTGCTT CTC-ATTTAC ATTTGT--GT TC-------A GAGCAAACAA macaque TTCATTGCTT CTC-ATTTAC ATTTGT--GT TC-------A GAGCAAACAA dusky_titi TTCATTGCTT CTA-ATTTAT ATTTGT--AT TC-------A GAGCAAACAA owl_monkey TTCATTGCTT CTA-ATTTAT ATTTGT--AT TC-------A GAGCAAACAA squirrel_monkey TTCATTGCTT CTA-ATTTAT ATTTGT--AT TC-------A GAGCAAACAA marmoset TTCATTGCTT CTA-ATTTAT ATTTGT--AT TC-------A GAGCAAACAA galago TTCATGTTTT CTC-ATTTAT ATTTGT--GT TC-------A GAACAAACAA mouse_lemur TTCATTTCTT CTC-ATTTGT ATTTAT--GT TC-------A GAGCAAACAA lemur TTCATTTCTT CTC-ATTTGT ATTTGT--GT TC-------A GAGCAAACAA rabbit TTCATTTCTT CTT-ATTTAT ATTTGT--GT TC-------A GAGCAAACAA st_squirrel TTCATTTCTG CAA-ATTTAT ATTTGT--AT TC-------A GAGCAAACAA guinea_pig TTCTTTTTCT CTTAATTTAT ATTTGT--GT TC-------T GAGCAAACAA rat CTCATTTCTT CTC-ATTTAT ATTTGT--GC TC-------A GAGAGAGCAA mouse TTCATTTCTT CTC-ATTTAT ATTTGT--GT TCTCTCTGAA GAGAGAACAA hedgehog TTCA-TTCTC CTA-ATTTAT A-TTGT--GT TC-------A CAGCAAACAG shrew TTCACTTCTC CAA-ATTTAT ATTTGT--GT TC-------A GAGCAAATAA rfbat TTCATTTCTC CTC-ATTTAT ATTTGT--GT TC-------A GAGCAAACAA cpbat TTCATTTCTC CCA-ATTTAT CTTTGT--GT TT-------A GAGAAAATGG cat TTTATTTTTC CT--ATTTAT ATTTGT--GT TT-------G GAGCGAACAA clouded_leopard TTTATTTTTC CT--ATTTAT ATTTGT--GT TT-------G GAGCAAACAA ferret ---------- ---------- ---------- ---------- ---------- dog TTCATTTCTC CTA-ATTTAT ATGTGT--GT TC-------T GAGCAAACAA pig TTCATTTCTC ------TTAT ATTTGT--GT TC-------A CAGCAAGCAA muntjak_indian TTCATTTCTC CTA-ATTTAT ATTTGT--CT TC-------A GAGCAAACAA sheep TTCATTTTTC CTA-ATTTAT ATTTGT--AT TC-------A GAGAAAACAA cow TTCATTTCTC CTA-ATTTAT ATTTGT--AT TC-------A GAGCAAACAA horse TTCATTTCTC CTA-ATTTAT ATTTGT--GT TC-------A GAGCAAACAA armadillo TTCATTTCTC CTA-GTTTAT ATTTCG--GT TC-------A GAGCAAACAA elephant CTGATTTCTT CTC-ATATAT ATTTCT--GT TC-------A GAGCAAACAA tenrec TTCATTTCTT A-C-ATTTAT ATTTCTCTGT TC-------T GAGCAAATAA wallaby ---------- ---------- -TTTCT--GC AA-------G GAACAAAGAA monodelphis ---------- ---------- -TGTCT--GA AA-------G GAACAAAGAA opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTCCAA---- -------ATC AATGATTATT AGCATATGTT TTAATGTCC- chimp TTCCAA---- -------ATC AATGATTATT AGCATATGTT TTAATGTCC- gorilla TTCCAA---- -------ATC AATGATTATT AGCATATGTT TTAATGTCC- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTCCAA---- -------ATC AATGATTATT AACATATGTT TTAATGTCC- colobus_monkey TTCCAA---- -------ATC AATGATTATT AGCATACGTT TTAATGTCC- vervet TTCCAA---- -------ATC AATGATTATT AACATATGTT TTAATGTCC- baboon TTCCAA---- -------ATC AATGATTATT AGCATATGTT TTAATGTCC- macaque TTCCAA---- -------ATC AATGATTATT AGCATATGTT TTAATGTCC- dusky_titi TTCCAA---- -------ATC AGTGATTATT AACATATGTT TTAATGTCC- owl_monkey TTACAA---- -------ATC AGTGATTATT AGCATATGTT TTAATGTCC- squirrel_monkey TTCCAA---- -------ATC AGTGATTATT AGCATACTTT TTAATGTCC- marmoset TTTCAA---- -------ATC AGTGATTATT AGCATATGTT TTAATGTCC- galago TTCCAA---- -------ATC AATGATTATG AGCATATGCC TTAATGTCC- mouse_lemur TTCCAA---- -------ATC AATGATTATT AGCATTTGTT TTAATGTCC- lemur TTCCAA---- -------ATC AATGATTATT AGCATATGTT TTAATGTCC- rabbit TTACAA---- -------ATC AACAGTTATT AGCAAATATT TCAATGTCC- st_squirrel TTCCAA---- -------ATC AATGATTATT AGCATATGTT TTGGTGTCA- guinea_pig TTCCAA---- -------ATC AGTGATTATT AGCATATGTT TTCATGTCC- rat TTCCAA---- -------ATC AATGATTGTT AGCATATGTT TTAATGTCC- mouse TTCCAA---- -------ATC AATGATTATT AGCATATGTT TTAATGTCC- hedgehog TTCCAT---- -------ATC AGTGATTATT AACATGTGCT TTAATATCC- shrew TTCCAA---- -------ATC AATGATTATT AACATATGTT CTAATATCC- rfbat TTTCAA---- -------ATC AATGATTATT AACATGTG-T TTAACGTCC- cpbat TTCTAA---- -------ATC AATGATTATT AACATATGTT TTAATGTCC- cat TTCCAA---- -------ACC AATGATTATT AACATATGCT TTAATGTCC- clouded_leopard TTCCAA---- -------ACC AATGATTATT AACATATGCT TTAATGTCC- ferret -----A---- -------ATC AATGATTACT AACATATGTT TTAATAACC- dog TTCCAA---- -------ATT AATGATTATT AACATATGCT TTAACGTCC- pig TTTCAA---- -------ATC AATAATTATA AAC--ATGTT TTAATGTTC- muntjak_indian TTCCAA---- -------ATC AATGATTATT AACATATGTT TTAATATTC- sheep TTCCAA---- -------ATC AATGATTATT AACACATGTT TTAATATTC- cow TTCCAA---- -------ATC AATGATTATT AACATATGTT TTAATATTC- horse ATCCAA---- -------ATC AATGATTATT AACATATGTT TTAATGTTC- armadillo TTCTAA---- -------ATC AGTGATTACT AACATATG-T TGAATGTCT- elephant TTCCAA---- -------ATC AGTGATTATT AACATATG-T TTAGGGTCC- tenrec TTCCAA---- -------ATC CATGATGATT ACCATATG-T TCAGTGTCC- wallaby TTCCCATACA GGAAACGATA CAGGAAAGAT AGTAC----- ---------A monodelphis TTCCCA---- -------ATA CAGGAAAAAT ATCAC----- ---------G opossum -----A---- -------ATA CAGGAAAAAT ATCAC----- ---------G platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAAA---CCT AAGAGCTGTG CC-AAAGAAA TCAG-GGTG- ---------T chimp AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T gorilla AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGCG- ---------T orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGCG- ---------T colobus_monkey AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGCG- ---------T vervet AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGCG- ---------T baboon AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGCG- ---------T macaque AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGCG- ---------T dusky_titi AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T owl_monkey AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T squirrel_monkey AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T marmoset AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T galago AAAT---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------G mouse_lemur AAAA---CCT CAGAACTGGG CC-AAAGAAA TCAG-GGTG- ---------G lemur AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------G rabbit AAAA---CCT AAGAACTGTG CC-AAGGAAA TCAG-GGTG- ---------T st_squirrel AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T guinea_pig AAAA---TCT AAAAACTGTG CCAAAAAAAA TCAG-GGTG- ---------T rat AAAA---CCT AGGAACTGTG CC-AAGGAAA TCAG-GGTG- ---------T mouse AAAAAAATCT AAGAACTGTG CC-AAGGAAA TCAG-GGTG- ---------T hedgehog AAAA---CCT AAAGAAGATG CC-AAGGGAA TCAT-GATG- ---------T shrew AAGA---CCT AAGACCTGTG CC-AAAAAAA ATATGGGTG- ---------T rfbat AAAA---CCT AAGAACTGTG CC-AAAGTAG TAAG-GACG- ---------T cpbat AAAA---CAT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T cat CAAA---CCT AAGAACTGTG CC-AAAGAAA ACAG-GGTG- ---------G clouded_leopard CAAA---CGT AAGAACTGTG CC-AAAGAAA ACAG-GGTG- ---------G ferret AAAA---CCT AAGAACTGTG CC-AAAGAAA ACAG-GGTG- ---------G dog AAAA---CCT AAGAACTGTG CC-AAAGAAA ACAG-GGTG- ---------G pig AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T muntjak_indian AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T sheep AAAA---CCT AAGAACTGTG CC-AAAGAAA TCAG-GGTG- ---------T cow AAAA---CCT AAGAACTGTG CC-AAA-AAA TCAG-GGTG- ---------T horse AAAA---CCT AAGAACTGCG CC-AAAGAAA TCAG-GGTG- ---------T armadillo GAAA---C-- -ATAATTGTG CC-AAGGAAA TCAG-GGAA- ---------T elephant AAAA---CCT AAGAACTGTG CC-AAAGAAA CCAG-GGTG- ---------T tenrec AAAC---CCT AAGAATTGGG CC-AAAGAAA CCAG-GGTG- ---------T wallaby AGAG-----T TAGGAGCCTA CC-TAGAGAG TGAG-GAAGA TTAAGCCAAG monodelphis ACAG------ --GGAGTATA CT-TAGAGAG CTAA-GAAAA TTAAACCATG opossum ACAA------ --GGAGTATA CA-TAGAGAG CTAA-GAAAA GTAAACCATG platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGACAAAAGA AATGCAAGGA ATCCAGCCTC ACCTTTACAT GGAAATACCT chimp AGACAAAAGA AATGCAAGGA ATCCAGCCTC ACCTTTACAT GGAAATACCT gorilla AGACAAAAGA AATGCAAGGA ATCCAGCCTC ACCTTTACAT GGAAATACCT orangutan ---------- ---------- ---------- ---------- ---------- gibbon AGACAAAAGA AATGCAAGGA ATCCAGCCTC ACCTTTACAT GGAAATACCT colobus_monkey AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAT GGAAATACCT vervet AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAT GGAAATACCT baboon AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAT GGAAATACCT macaque AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAT GGAAATACCT dusky_titi AGACAAAAGA AATGCAAGGA ATCCAGCCTC ACCTTTACAT GGAAATGCCT owl_monkey AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAT GGAAATGCCT squirrel_monkey AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAT GGAAATGCCT marmoset AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAT GAAAATGCCT galago AGGCAAAAGA AATGCAAGTA ATTCAGCCAC ACCTTTACAG GGAAATGCCT mouse_lemur AGACAAAAGA AATGCAAGGA ATTCCACCAC ACCTTGAGAG GGAAATGCCT lemur AGACAAAAGA AATGCAAGGA ATTCCACCAC ACCTTTAGAG GGAAATGCCT rabbit AGACAAAAGA AATGTGAGGA ATTCAGCCTC ACCTTTACAG GAAAATACCT st_squirrel AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAG GGAAATGTCT guinea_pig AGATGAAA-C AATGCAAGGA ATTCAGCCTC ACCTTTACAG GGAAATGCCT rat AGACAAAAGA AATGCaagga attcagcctc acctttACAG GGAAATGCCT mouse AGACAAAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAG GGAAATGCCT hedgehog A-CCAAAAAA AATGTAAGAA ACCCATCAAT ACCTTTACAG GAAAATGTCT shrew AGACAAAAGA AATGAAAGGA ATTCAGCCTC ACCTTTACAG GGAAATGCCT rfbat AGACAAAAGA AATTTAAGTC ATGCAGCCTC CCCTTTAGAG GGAAATGCCT cpbat AGATAAGAGA AATGTAAGGA ATGCAGCCTC ACCTTT---- ---------- cat AAACAAAAGA AATGTAAGGA ATTCAGCCTC ACCTTTACAG GGAAATGCCT clouded_leopard AAACAAAAGA AATGTAAGGA ATTCAGCCTC ACCTTTACAG GGAAATGCCT ferret AAACAAAAGA AATGTAAGGA ATTCAGCCTC ACCTTTACAG GGAAATGCCT dog AGACAAAAGA AATGCAAGGA ATTTAGCCTC ACCTTTACAG GGAAATGTCT pig AGACAAAAGG AATGTAAGGA ATTTAGCCTC ACCTTTACAG GGAAATGCCT muntjak_indian AGACAAAAGA AATGCAAGGA ATTTGGCCTC ACCTTTACAG GGAAATGCCT sheep AGGCAAAAGA AATGCAAGGA ATCCAGCCTC ACCTTTACAG GGAAATGCCT cow AGACAAAAGA AATGCAAGGA ATCCAGCCTC ACCTTTACAG GGAAATGCCT horse AGAC-AAAGA AATGCAAGGA ATTCAGCCTC ACCTTTACAG GGAAATGCCT armadillo AGACAAAAGA AATGTAAGGC ACTCAGCCTC ACCTTTAAAG GGAAATGCCT elephant AGACAAAAGA AATGTTAGGA ATCCAGCCTC ACCTTTAAAG GGAAGTGCCT tenrec AGACAAAAGA AATGTGAGGA ATTCAGCCTC ACCTTTCAAG GGAAATGCTT wallaby AGATAAGAAA AGATTAAGGT CCTGTACAAA GCCTGA---- ---------- monodelphis AAGT-AGGGA AGCTTTAGGT CTTGCACAAA GCCTAA---- ---------- opossum AAGTAAGGGA AGCTTCAGGT CCTGCACAAA GACTAT---- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTTCAGAATT GCTCAGGTCT TCTGAGGATG CATCTGCATA TGA-CACTAG chimp CTTCAGAATT GCTCAGATCT TCTGAGGATG CATCTGCATA TGA-CACTAG gorilla CTTCAGAATT GCTCAGATCT TCTGAGGATG CATCTGCATA TGA-CACTAG orangutan ---------- ---------- ---------- ---------- ---------- gibbon CTTCAGAATT GCTCAGATCT TCTGAGGATG CATCTGCATA TGA-CACTAG colobus_monkey CTTCAGAATT GCTCAGATCT TCTGAGGATG CATCTGCACA TGA-CACTAG vervet CTTCAGAATT GCTCAGATCT TCTGAGGATG CATCTGCACA TGA-CACTAG baboon ATTCAGAATT GCTCAGATCT TCTGAGGATG CATCTGCACA TGA-CACTAG macaque ATTCAGAATT GCTCAGATCT TCTGAGGATG CATCTGCACA TGA-CACTAG dusky_titi CTTCAGAATG GCTCAGATCT TCTGAGGATG CATCTGTGTA TGA-CACTAG owl_monkey CTTCAGAATG GCTCAGATCT TATGAGGATG CATCTGTATA TGA-CACTAG squirrel_monkey CTTCAGAATG GCTCAGATCT TATGAGGATG CATCTGTATA TGA-CATTAG marmoset CTTCAGAATG GCTCAGATGT TATTAGGATG CGTCTGTATA TGA-CACTAG galago CCTCAGAGTG GCTCTCATCT TCTGAGGATG CATCTGTATG TGA--ACCAG mouse_lemur CTTCAGAGTG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGCAG lemur CTTCAGAGTG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGTAG rabbit CTTTAGAATG -CCCTCATCT TCTGAGGATG CATCTGCATA TG------AG st_squirrel CTTCAGAGTG CCTCTCATCA TCTGAGGATG CATCTGCATT TGAGAAGCAG guinea_pig CTTCAGAGTG GCTCTCATCA TCAGAGGATG CATCTGCAGA TGAAAAGCAG rat CTTCAGAATG GACTTCATCC TTTGAGGATA CATCTGTATA AGAGAAGCAG mouse CTTCAGAATG GCCCCCATCC TTTGAGGATA CATCTGTATA AGAGAAGCAG hedgehog CCTCAGAATG GCTCTCATCT TCTAAGGATG CATCTGCATA TGC--AGCAG shrew CCTCTGAAGG GCTCTCATCT TCTAAGGATG CATCTGCATA TGA--AACAG rfbat CTTCAGAACA GCTCCAATCT TCCAAGGATG CATCTGTATA TGA--AGCAG cpbat ---------- ---------- ---------- ---------- ---------- cat CTTGAGAATG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGCAG clouded_leopard CTTGAGAATG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGCAG ferret CTTCAGAACT GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGCAG dog CTTTAGAATG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGCAG pig CTTCAGAATG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGCAG muntjak_indian CTTTGGAATG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGTAG sheep CTTCGCAATG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGTAG cow CTTCGGAATG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGTAG horse CTTCAGAAGG GCTCTCATCT TCTGAGGATG CATCTGCATA TGA--AGCAG armadillo CTTTAGAATG GTTTTCATCT TCTGAGGATG CATCTGTATA TGA--AGCAG elephant CTTCAGAATG GCTCTCAAGT TCTGAGGATG CACCTGTATA TGA--AGCAA tenrec CTTCAGAATG GCTTTTCTAT TCAGAGGATG CATCTGCATA TGC--AGCAA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GGCGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA chimp GGCGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA gorilla GGCGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA orangutan ---------- ---------- ---------- ---------- ---------- gibbon GGTGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA colobus_monkey GGCGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA vervet GGCGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA baboon GGCGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-GAGGCA macaque GGCGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA dusky_titi GATGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA owl_monkey GACGAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA squirrel_monkey GATGAGGA-- TGTGTGACTC AGTAATTCCA CTCACTGGAA GTC-AAGGCA marmoset GATGAGGA-- CGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA galago GGCAAGGA-- TGTGTGACTC AGGAATTCCC CTCGCTGCAA GTC-AAGGCA mouse_lemur GGCAAGGA-- TGTGTGACTC AGAAATTCCA CTCGCTGCCA GCC-AACACA lemur GGCAAGGA-- TGTGTGACTC AGAAATTCCA CTCCCTGCCA GCC-AACGCA rabbit GGTAGGGA-- TGTGTGACTC AGAAATTCCA TTCACTGCAA GTC-AAGGCA st_squirrel GGCAAGGA-- TGTGTGACTC AGAAATTCCG CTCGCTGGAA GTC-AAGGCA guinea_pig GGCAAGGA-- TGTATGACTC AGAAATTCCA CTCACTGAAT GTG-GAGGCA rat GGCAAGGA-- TGTATGACTC AGAAATTCCA CTCCCTGGAA GT---CGACA mouse GGCAAGGA-- TGTGTGACTC AGAAATTCCA CTCCCTAGAA GT---CGGCA hedgehog GGCAAGGA-- TGTGTGACTC AGAAATTCCA TCCAGTGCAA GTCAAAGGCA shrew GTCAAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAT GTCAAAGGAA rfbat GGCAAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTCACAG--A cpbat ---------- ---------- ---------- ---------- ---------- cat GGCAAGGA-- TGTATGACTC AGAAATTCCA TTCACTGGAA GTCAAAGGCA clouded_leopard GGCAAGGA-- TGTATGACTC AGAAATTCCA TTCACTGGAA GTCAAAGGCA ferret GGCAAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTC-AAGGCA dog GGCAAGGA-- TGTATGACTC AGAAATTCCA TTCACTGGAA GTC-AAAGCC pig AGCAAAGATG TGTGTGACTC AGAAATTCCA TTCACTGGAA GTCAAAGGCA muntjak_indian GGCAAGGA-- TGTGTGACTC AGAAATTCCA TTCAC----- -TCAAAGACA sheep GGCAAGGA-- TGTGTGACTC AGAAATTCCA TTCAC----- -TCAAAGGCA cow GGCAAGGA-- TGTGTGACTC AGAAATTCCA TTCACTCAAA GTCAAAGGCA horse GGCAAGGA-- TGTGTGACTC AGAAATTCCG CTCCCTGGAA GTCAAAG-CA armadillo GGTGAGGA-- TGTATGACTC AGAAATTCCA CTGCCTGGAA GTCAAAGACA elephant AG-GAGGA-- TAAGTGACTC AGAAATTCCA CTCACTGGAA GTCAAAAGCA tenrec GG-GAGGA-- TGTGTGACTC AGAAATTCCA CTCACTGGAA GTCAAAGGCA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---TA--TTT TTTTTTTTTT CAGGAGTATA ATCATAAAGA TAAGTTGAAA chimp ---TA----- ---------T CAGGAGTATA ATCATAAAGA TAAGTTGAAA gorilla ---TA----- ---------T CAGGAGTATA ATCATAAAGA TAAGTTGAAA orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---TA----- ---------T CAGGAGTATA ATCATAAAGA TAAGTTCAAA colobus_monkey ---TA----- ---------T CAGGAGTATA ATCATAAAGA TAAGTTCAAA vervet ---TA----- ---------T CAGGAGTATA ATCATAAAGA TAAGTTCAAA baboon ---TA----- ---------T CAGGAGTATA ATCATAAAGA TAAGTTCAAA macaque ---TA----- ---------T CAGGAGTATA ATCATAAAGA TAAGTTCAAA dusky_titi ---tt----- ---------T CAGGAGTATA ATCATAAAGA TAAATTTAAA owl_monkey ---Tt----- ---------T CAGGAGTATA ATCATAAAGA TAAATTTAAA squirrel_monkey ---tt----- ---------T CAGGAGTATA ATCATAAAGA TATATTTAAA marmoset ---tt----- ---------T CAGGAGTATA ATCATAAAGA TAAATTCAAA galago TCTTT----- ---------T CAGGAGTATA ATCATACAGA TAAACTTAAA mouse_lemur ---------- ---------T CAGGAGTATA ATCATAAAGA TAAATTTAAA lemur ---------- ---------T CAGGAGTATA ATCATAAGGA TAAATTTAAA rabbit ---CT----- ---------T CAGGAGTATA ATCACAAAGA TAAATTTAAA st_squirrel ---TT----- ---------T CAGTAATATA ATCATAAAGA TAAATTTAAA guinea_pig ---TT----- ---------T CAGGAATATA ATCACGAAGA GAACTTTAAA rat --TTT----- ---------T CAGGAGGATA ATCATAAAGA TAAGTTGAAA mouse ---TT----- ---------T CAGGAGGATA ATCGTAAAGA TAAACTGAAA hedgehog ---TT----- ---------T CAGAAGT--- ------AAGA TAAATTTAAA shrew ---TA----- ---------T CAGAATTATA ------AAGA TAAATTTAAA rfbat ---TT----- ---------T CAGGAGTATA ------AAGA TAAATTTGAA cpbat ---------- ---------- ---------- ------aaga taaaaataCA cat ---------- ---------T TAGAAGTATA ------AAGA TAAATTTAAA clouded_leopard ---T------ ---------T TAGAAGTATA ------AAGA TAAATTTAAA ferret ---------- ---------T TAGAAGAATA ------AAGA TAAATTTAAA dog ---------- ---------T TAGAAGTATA ------AAGA TAAATTTAAA pig ---GA----- ---------T CAGGAGTATA ------AAGA TAAATTTAAA muntjak_indian ---TA----- ---------T CAGGAGTATA ------AAGA TAAATTTAAA sheep ---TA----- ---------T CAGGAGTATA ------AAGA TAAATTTAAA cow ---TA----- ---------T CAGGAGTATA ------AAGA TAAATTTAAA horse ---TA----- ---------T CAGGAGCATA ------AAGA TAAATTTAAA armadillo ---T--A--- ---------T CAGGAGTATA ATCAGAGAGA TAAATGTAAA elephant ---T-GT--- ---------T CAGGAGTATA ATCATAAAGA TAAATTTAAA tenrec ---CGGC--- ---------T CAGGACTACA GTCACAAAGA TAAATCCATA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ACAGCATTCC AGGAGATCAT GGT-TTA--A AAAAA-AA-G AGAATGTAAA chimp ACAGCATTCC AGGAGATCAT GG--TTA--A AAAAA-AAAG AGAATGTAAA gorilla ATAGCATTCC AGGAGACCAT GG--TTA--A AAAAA-A--G AGAATGTAAA orangutan ---------- ---------- ---------- ---------- ---------- gibbon ATAGCATTCC AGGAGATCAC GG--TTA--A AAAAA-A--G AGAATGTAAA colobus_monkey ATAGCATTCC AGGAGATCAT GG--TTT-AA AAAAA-A--G AGCATGTAAA vervet ATAGCATTCC AGGAGATCAT GG--TTTAAA AAAAA-A--G AGAATGTAAA baboon ATAGCATTCC AGGAGATCAT GG--TTT--A AAAAA-A--G AGAATGTAAA macaque ATAGCATTCC AGGAGATCAT GG--TTT--A AAAAA-A--G AGAATGTAAA dusky_titi ATAGCATTCC AGAAGATCAT GG--TTT--A AAA------- AGAAGGTAAA owl_monkey ACAGCATTCC AGGCGATCAT AG--TTA--A AAAA-----G AGAATGTAAA squirrel_monkey ATAGCATTCC CAGGGATCAT GG--TTA--A AAAA-----G AGAATGTAAA marmoset ATAGCATTCC AGGAGATCAT GG--TTA--A AAAA-----G AGAATGTAAA galago ATATCATTCC AGGAGATCTT CA--TTT--A AAGAG-A--G AGAATGTAGA mouse_lemur ATAGCATTCC AG----TCC- ----TTT--A AAAAA-A--G AGAATGTAAA lemur ATAGCATTCC AGGAGATCC- ----TTT--A AAAAA-A--G AGAATGTAAA rabbit ATAGCTTTCA AGGAGATTA- ----TTTGAT AAAA-----G AGAATGTACA st_squirrel ATAGCATTCC AAGAGGTCA- ----TTT--T AAAG------ GGAATGTAAA guinea_pig ATAGTGTTCC AGGAGA---- ---------- ---------- ---------- rat ATAG-----C AGGAGATCA- ----TTT--T AAAA-----C AGAATGTAAA mouse ATAG-----T GGGAGATCA- ----TTT--T AAAA-----C AGAATGTAAA hedgehog GTAGTATTAT AGGAGATCA- ----TTA--A AAAAG-G--A AGAAAGTAAA shrew ATAGTGTTCT AGAAGA---- ---------- ---------- ---------- rfbat AGAGCATTCC AGGAGA---- ---------- ---------- ---------- cpbat ATAGCATTCC --TAGA---- ---------- ---------- ---------- cat ACAGCATTCC AGG------- ---------- ---------- ---------- clouded_leopard ACAGCATTCC AGG------- ---------- ---------- ---------- ferret ATAGCATTCC AGG------- ---------- ---------- ---------- dog ATAGCATTCC AGG------- ---------- ---------- ---------- pig ATAGCATTCC AAGAAG---- ---------- ---------- ---------- muntjak_indian ATAACATTCC AGGAGA---- ---------- ---------- ---------- sheep ATGACATTCC AGGAGA---- ---------- ---------- ---------- cow ATAGCATTCC AGGAGA---- ---------- ---------- ---------- horse ATAGCACTCC AGGAGA---- ---------- ---------- ---------- armadillo ATAGCATTCC AGGAAATCa- ----tta--a aaaaaaa--a GGAATCTAAA elephant ATAGCATTCC AGGAGATCA- ----TTT--A AAA---A--G AGAATGTAAA tenrec ATATC----- ------TCA- ----TTA--A AAGGAGA--G AGAATGTAAA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ------TCA- ---CTTG--G GAGAAAA--A AGAATGTAAA opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATTCCTTTGT TAAAG-CCCA AAGTCAATCA AA-TCTATTT CCATCCTTAG chimp ATTCCTTTGT TAAAG-CCCA AAGCCAATCA AA-TCTATGT CCATCCTTAG gorilla ATTCCTTTGT TAAAG-CCCA AAGCCAATCA AA-TCTATTT CCATCCTTAG orangutan ---------- ---------- ---------- ---------- ---------- gibbon ATTCCTTTGT TAAAA-CCCA AAGCCAATCA AA-TCTATTT CCACCCTTAG colobus_monkey ATTCCTTTGT TAAAG-CCCA ATGCCAATTA AA-TCTATTT CCATCCTTAG vervet ATTCCTTTGT TAAAG-CCCA ATGCCAATTA AA-TCTATTT CCATCCTTAG baboon ATTCCTTTGT TAAAG-CCCA ATGCAAATTA AA-TCTATTT CCATCCTTAG macaque ATTCCTTTGT TAAAG-CCCA ATGCAAATTA AA-TCTATTT CCATCCTTAG dusky_titi ATTCCTTTGT TAAAG-TCCA AAGCCAATTA AA-TCTATTT CCATCCTTAG owl_monkey ATTCCTTTGT TAAGG-TCCA AAGCCAGTTA AA-TCTATTT CCATCCTTAG squirrel_monkey ATTCCTTTGT TAAGG-TCCA AAGCCAATTA AA-TCTATTT TCATCCTTAG marmoset ATTCCTTTGT TAAGG-TCCA AAGCCAATTA AA-TCTATTT CCATCCTTAG galago GTTTCTTTGT TAAAG-CCCA AAGCCAATTA GA-TCTATTT CCATCATCAA mouse_lemur ATTCCTTTGT TAAAG-CCCC AAACCAATTA AA-TCTACTT ACATCATTAG lemur ATTCCTTTGT TAAAG-GCCA AAGCCCATTA AA-TCTACTT CCATCATTAG rabbit ATTCCTGTGT TAAA--TAAC AATCCAATTG AA-TCCAATT TTACCCTTAG st_squirrel ATTCCTTTGT TAAA--CCCA AAGCCAGTAA AA-TCCATTT GCACCCTCAG guinea_pig ---------- ---------- ---------- ---------- ---------- rat ACTCTTTAGC TAAAG-CCCC AAACCAATTA AA-TTCATTT CTACCATCAG mouse ACTCTTTAGT TAAAG-CCCC CAACCAGTTA AAATTGATTT CTACCCTCAG hedgehog GTTACTATGT TGAAG-TTCA CAGTCAATGA AA-TTGATTT TCATATTTAG shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo ATTCCTTTCT TAAAG-CCCA AAATCAA--A TC-TTTATTT TCATATTTAG elephant ATTTATTTGT TAAAG-CCCA GAGCCAATTA AA-TCTAGCT CCATCCCTAG tenrec ATCCCTTTGG TAAAG-CCCA GAGCCAATTA AA-TCTATTT TCATCCCTAG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ATTCATTTAT TCAGGtttc- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTATT chimp CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTATT gorilla CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTATT orangutan ---------- ---------- ---------- ---------- ---------- gibbon CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTATT colobus_monkey CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTATT vervet CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTATT baboon CAAC------ --GTGTGGTT GCA----TTA AAGTTAATCA CTTTTCTATT macaque CAAC------ --ATGTGGTT GCA----TTA AAGTTAATCA CTTTTCTATT dusky_titi CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTATT owl_monkey CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTATT squirrel_monkey CATC------ --ATGTGGTT CCA----TTA AAGTTAATCG CTTTTCTATT marmoset CAAC------ --ATGTGGTT CCA----TTA AAGTTAATCA CGTTTCTATT galago CA-TGTCATT AAATCTATTT CCATCTGTTT CTATTAATCA CAT---TTTT mouse_lemur CA-C------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTTTT lemur CA-T------ --ATGTGGTT CCA----TTA AAGTTAATCA CTTTTCTTTT rabbit TA-T------ --ATGTGGTT CAA----CTA AAGACAATAA TTGTTCTATT st_squirrel CA-C------ --ATATGGTT CCA----TTG ATGTTAATCA CTTTTCT-TT guinea_pig ---------- ---------- ---------- ---------- ---------- rat CC-C------ --ATGTGTTT CCA----CTA ATGTTGCTCA CTTTCCT-CT mouse CC-C------ --ATGAGGTT CCA----CAA ATGTTATTTA CTTTTCT-CT hedgehog CA-C------ --ATGTGGTT CTC------- ---------- --------TT shrew ---------- ---------- ---------- ---------- ---------- rfbat ---------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig ---------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ---------- ---------- ---------- ---------- ---------- armadillo CA-C------ --ATGTAGTT CCA----TTA AAGTTAATGA CCTTTCTGTT elephant CA-C------ --ATGTGGTT CCA----TTA AAGTTAATGA CTTTTCTGTT tenrec CA-C------ --ATGTGGTT CCA----TTA AAGTTAATGA CTTTTCTGTT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTCT------ --------TT GTGAGAAACT ------AAAA TTATTAATTA chimp TTCT------ --------TT GTGAGAAACT ------AAAA TTATTAATTA gorilla TTCT------ --------TT GTGAGAAACT ------AAAA TTATTAATTA orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTCT------ --------TT ATGAGAAACT ------AAAA TTATTAAGTA colobus_monkey TTCT------ --------TT GTGAGAAACT ------AAAA TTATTAATTA vervet TTCT------ --------TT GTGAGAAACT ------AAAA TTATTAATTA baboon TTCT------ --------TT GTGAGAAACT ------AAAA TTATTAATTA macaque TTCT------ --------TT GTGAGAAACT ------AAAA TTATTAATTA dusky_titi TTCT------ --------TT GTGAGAAACT ------AAAA CTATTAATTA owl_monkey TTCT------ --------TT GTGAGAAACT ------AAAA CTATTAAGTA squirrel_monkey TTCT------ --------TT TTGAGAAACT ------AAAA CTATTAATTA marmoset TTCT------ --------TT GTGGGAAACT ------AAAA CTATTAATTA galago TTCT------ --------TT GTCATGAACT ------AAAA TTATTAATTA mouse_lemur TTCT------ --------TT GTAGGAATCT ------AAAA TTATTAATTA lemur TTTT------ --------CT GTAAGAAACT ------AAAA TTATTAATTA rabbit TTCA------ --------TT AGCAAAGACT ------AAAA TTATTACTTA st_squirrel TTTT------ --------TT GAAAGAAACC ------AAAA TTATTAGTTA guinea_pig -TCAAAACCA AATCCTCCTT GCAATAACCT ------AAAA TTATTAATTG rat TC-------- --------AC GCAGCAAACT TCT---AACA TGATTAGTTA mouse TCCTGATTAG AAAACTC-AT GCAGCAAACT GCTTATAAAA TGATTAGTTT hedgehog T--------- ---------- ---------- ---------- ---------- shrew -TCT------ --------TT GTAAGATACT ------AAAA TTATTAATTA rfbat -TCT------ --------TT GTAAGAAATT ------AAAA TTATCAGTTA cpbat -TCT------ --------TT GAAAGAAACT ------AAAA TTACTAACTA cat -TAT------ --------TT GCAAGAAGTT ------TAAA TCATTAATTG clouded_leopard -TAT------ --------TT GCAAGAAGTT ------AAAA TCATTAATTG ferret -TCT------ --------TT GTAAGAAA-- ---------- ---------- dog -TCT------ --------TT GTAAGAAA-- ---------- ---------- pig -TCT------ --------TT GTAAGAAAGT -------AAA TTATTAATTA muntjak_indian -CCT------ --------TT GTAAGAAACT ------AAAA TTATTGATTA sheep ---------- ---------- ---------- ---------- ---------- cow -CCT------ --------TT GTAAGAAACT ------AAAA TTATTAACTA horse -TCT------ --------TT GTAAGAAACT ------AAAA TTATGAAGTA armadillo TTCT------ --------TT GTAAGAAACT ---------- -----AATTA elephant TTCT------ --------TT GTAAGAAACT ------AAAA TTATTAATTA tenrec TTCT------ --------TT GTAAGAAATT ------AAAA ATATCAATGA wallaby -CCT------ --------TT GTCGGAAACT ------AAAA TTACTAATTA monodelphis -CCT------ --------TT GTAGGAAACT ------AAAA TGACTAATTA opossum -CCT------ --------TT GTAGGAAACT ------AAAA TGACTAATTA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human G---ATTTTC ACTGTGGTG- ---TTAATAA TGTATTATTT TTTTGTGCA- chimp G---ATTTTC ACTGTGGTG- ---TTAATAA TGTATTATTT TTTTGTGCA- gorilla G---ATTTTC ACTGTGGTG- ---TTAATAA TGTATTATTT TTTTGTGCA- orangutan ---------- ---------- ---------- ---------- ---------- gibbon G---ATTTTC ACCGTGGTG- ---TTAGTAA TGAATTATTT TTTTGTGCA- colobus_monkey G---ATTTTC ACTGTGGTG- ---TTAATAA TGAATTCTTT TTTTGTGCA- vervet G---ATTTTC ACTGTGGTG- ---T---TAA TGAATTCTTC TTTTGTGCA- baboon G---ATTTTC ACTGTGGTG- ---TTAATAA TGAATTCTTC TTTTGTGCA- macaque G---ATTTTC ACTGTGGTG- ---TTAATAA TGAATTCTTC TTTTGTGCA- dusky_titi G---ATTTTC ACTGTCATT- ---TTAATAA TAAATTCTTT TTTTGTGCA- owl_monkey G---ATTTTC ACTGTCATG- ---TTAATAA TGAATTCTTT TTTTGTGCA- squirrel_monkey G---ATTTTC ACTGTCATG- ---TTAATAA TGAATTCTTT TTTTGTGCA- marmoset G---ATTTTC ACTGTCATG- ---TTAATAA TGAATTCTTT TTTTGTGCA- galago G---ATTTTC ACTATGATG- ---CTGATAA TGAATTCTTT TGTTGTGCA- mouse_lemur G---ATTTTC ACTATGATG- ---ATGATAA TGTATCCTTT TTTTGTGCA- lemur G---ATTTTC ACTATGATG- ---GTGATAA TGAATCCTTT TTTTGTGCA- rabbit A---ATTTTC ACTGTGATG- ---CT-ATAA TGAATTCTTT TTTTGTGCA- st_squirrel G---AATTTC ACTGTAATGT ATGTT-ATAG GGAATTATTT T--------- guinea_pig G---AGTTTC ATTGTAATG- ---CT-ATAA TAAATTACTT T--------- rat G---GTTTTC ACTGTACTG- ---CT-ATAA TGAATTTTTT T--------- mouse G---GGTTTC ACTTTACTG- ---CT-ATAA TGAATTCTTT T--------- hedgehog ---------- ---------- ---------- ---------- ---------- shrew G---GTTTTC ACTGTTATA- ---CT-ACAA TGATTTCTTT TTTTATACAT rfbat A---ATTTAC AC--TGATG- ---TT-ATAA TGAATTATTC TTTTGTGCA- cpbat G---ATTTAC ACTGTGGTG- ---TT-ACAG TGAATT-TGT TTTTGTACA- cat G---ATTTTC AATGTAGTA- ---CT-ATAA TTAACCCTTC TTTTGTCCA- clouded_leopard G---ATTTTC AATGTAGTA- ---CT-ATAA TTAACCCTTC TTTTGTCCA- ferret -----TTTTC AATGTAGTG- ---CT-ATAA CTAACTCTTT TTTTGTGCA- dog -----TTTTC AATGTAGTG- ---CT-ATAA TTAACT---T TTTTGTGCA- pig A---ATTTTC AATGTGATG- ---CT-ATAA TCCCCTTTTT -TTT------ muntjak_indian ATAGATTTTC AGTATGATG- ---CT-AAAA TTAATTATTT -TTTGTACA- sheep ---------- ---------- ---------- ---------- ---------- cow ATAGATTTTC AGTATGATG- ---CT-AAAA TTAATTATTT -TTCTTACA- horse G---ATTTTC ACTGTGATG- ---CT-ATAA TA-------- -TCTGTGCG- armadillo G---ATTTTC ACCATGATG- ---CT-ATAA TGAATTCTTT TTTTATATA- elephant G---ATTTTC ACTGT-ATG- ---TT-ATAA TGAATTCTTT TTTTGTGCC- tenrec G---ATTTTC ACTGTGATG- ---CT-ATAA TA----CCTT TTTTGTGCA- wallaby G---ATTTTC ACTCTCATA- ---CT-ATAA TGAATTCTTT TTTTGTGAA- monodelphis G---ATTTTC A-TCTTATA- ---CT-ATAA TGAATTCTTT TTTTGTGAA- opossum G---ATTTTC A-TCTCATA- ---CT-ATAA TGAATTCTTT TTTTGTGAA- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA chimp --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA gorilla --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA orangutan ---------- ---------- ---------- ---------- ---------- gibbon --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA colobus_monkey --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA vervet --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA baboon --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA macaque --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA dusky_titi --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTAAAACAA owl_monkey --TATTTAAA ATAAGAATAT TTGTGAAC-- -AA--C---T TTTAAAACAA squirrel_monkey --TATTTAAA ATAAGAATAT TCGTGAAC-- AAA--C---T TTTAAAACAG marmoset --TATTTAAA ATAAGAATAT TTGGGAAC-- AAA--C---T TTTAAAACAA galago --TATTTAAA ATAAGAATAT TCCTGAAC-- AAA--C---T TTTAAAAC-- mouse_lemur --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTTAAACAA lemur --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--C---T TTTTTAACAA rabbit --T---TAAA GTAAGAATAA TCATGAAC-- AAA--G---T TTTAAAACAA st_squirrel ---ATATAAA ATAAGAATAT TAACAAAT-- G--------- ---------- guinea_pig ------TAAA TATAAAACAT TCGTGAGC-- A--------- -------CAA rat ------TAAA ATTAGAATAT TCATGA-C-- A--------- -------CAA mouse ------TAAA ATAAGAATAT CCGTGA-C-- A--------- -------CAA hedgehog ---------- ---------- ---------- ---------- -------CAA shrew GGTATTTAAA ATAAGAATCT TCATAAAT-- AAATTT---T TTTAAAA--- rfbat --TATTTAAA GTAAGAATA- TCATGAATAA AAA--C---T TTTAGAACAA cpbat --TACTTAAA GGAAGAATAT TCATGAAT-- AAA--C---T TTTAAAA--- cat --TTTTAAAA ATAAAAATAT GCATGAGC-- AAACtt---t gttaaatCAA clouded_leopard --TTTTAAAA ATAAAAATAT GCATGAGC-- AAACtt---t gttaaatCAA ferret --TATTTAAA ATAAAAATAT TCATGAGC-- A--------- -------CAA dog --GATTTAAA ATAAAAATAT TCATGAAC-- A--------- -------CAA pig -------AAA ACAAGAATAT TTACAAGC-- A--------- ---------- muntjak_indian --TGTTAAAA ATAAGAATAT TTATAAGA-- A--------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow --TGTT-AAA ATAAGAATAT TTATAAGA-- A--------- ---------- horse --TATTTAAA ACAAGAATAT GCATGAGC-- C--------- -------CAA armadillo --TATTTAAA ATAAGAATAT TCATGAAC-- AGA--C---T TTTAAA-CCT elephant --TATTTAAA ATAAGAATAT TCATGAAC-- AAA--CTTTT TTTAAA-CAA tenrec --TATTTAGA GTAAGAATA- TCATGAAC-- AAA--C--TT TTAAAA-CAA wallaby --TATTTCAA ATAAGA---C TCAGAAAA-- AAA--A---T TTTGAG---- monodelphis --TATTTCAA ATAAGA---C TCATAAAC-- AAA--A---C TTTGAA---- opossum --TATTTCAA ATAAGA---C CCATAAAA-- -AA--A---C TTTGAA---- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATATGTCAAA ATATGTCTTG GAACAA-TGT C-----CACT GGCCTTCTGG chimp ATATGTCAAA ATATGTCTTG GAACAA-TGT C-----CACT GGCCCTCTGG gorilla ATATGTCAAA ATATGTCTTG GAACAA-CGT C-----CACT GGCCCTCTGG orangutan ---------- ---------- ---------- ---------- ---------- gibbon ACATGTCAAA ATATGTCTTG GAACAA-TGT C-----CACT GGCCCTCTGG colobus_monkey ATATGTCAAA ATATGTCCTG GAACAA-TGT C-----CACT GGTCCTCTGG vervet ATATGTCAAA ATATGTCCTG GAACAA-TGT C-----CACT GGCCCTCTGG baboon ATATGTCAAA ATATGTCCTG GAACAA-TGT C-----CACT GGCCCTCTGG macaque ATATGTCAAA ATATGTCCTG GAACAA-TGT C-----CACT GGCCCTCTGG dusky_titi ATATATCAAA ATATGTCCTG GAACAA-TAT C-----CACT GGCCCTCTGG owl_monkey ATATATCAAA ATATGTCCTG GAACAA-TGT C-----CACT GTCCCTCTGG squirrel_monkey ATATATCAAA ATATGTCCTG GAACAA-TGT C-----CACT GTCCCTCTGG marmoset ATATATCAAA ATATGTCCTG GAACAA-TGT C-----CACT GTCCCTCTGG galago --------AA ATATGTTCTG GAACCATCGT C-----CACT GGCCCTCTGG mouse_lemur ATATATCAAA ATATGTCCTG GAAC---CGT C-----CACT GGCCCTCTGG lemur ATATATCAAA ATATGTCCTG GAACCATCAT C-----CACT GGCCCTCTGG rabbit ATATGTCAAA ATATGTGCTG GAACAA-TAT C-----CA-T GGTCCATTGG st_squirrel ---------- ---------- ---------- ---------- ---------- guinea_pig ATGTGT-AAA ATAGGTCCTG CAACAA-TGT C-----CACT GGCCTTCTGG rat ATATGTCAAA ATATGTTCTG GAATGT-TGT C-----CACT GGCCCTCTGG mouse ATATGTCAAA ATATGTTCTG GAATGT-TGT G-----CACT GGCCCTCTGG hedgehog ATATGCCAGA ACATGTACTG GAAGGA-TGT T-----CACA GGCCCTCAGG shrew ---------- ---------- ---------- ---------- ---------- rfbat ACATTTCAAA ---------- -----A-TGT C-----CATT GGCCCTCTGG cpbat ---------- ---------- ---------- ---------- ---------- cat ATATGTCAAA ATATGTCCTG GAACAA-TGT AACTTGAATT GCCCT--TGG clouded_leopard ATATGTCAAA ATATGTCCTG GAACAA-TGT AACATGAATT GCCCT--TGG ferret ATATGTCAAA ATATGTCCTG GCACAT-TGT C-----CATT GCCCT--TGG dog ATATGTCAAA ATATGTCC-- ---------- -------ATT GCCCT--TGG pig ------CCAA ATATGTCCTG TAAAG--TAT C-----CAGC GGCCTTTTGG muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---------- ---------- ---------- ---------- ---------- cow ---------- ---------- ---------- ---------- ---------- horse ATATGTCAAA ATATGTCCTG GAATGA-TGT C-----CATT GGCCTTCTGG armadillo ATACGTAAAA ATATATCCTG GAACAA-TGT C-----CACT GGCCCTCCAG elephant ATATGTCAAA ATATGTCCTG GCACAA-TGT C-----CACT GCCCCTCTGG tenrec ATATGTCAAA CTATGTTCTG GCACAA-AGT C-----CACT GACCCTCTGG wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT chimp GAGCAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT gorilla GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCGT-CCTT orangutan ---------- ---------- ---------- ---------- ---------- gibbon GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT colobus_monkey GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT vervet GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT baboon GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT macaque GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT dusky_titi GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCATTTTTT owl_monkey GAGTAGCATG AATTCTATTC ATATAGGGAA CCCAGGGAAT CCCAT-TTTT squirrel_monkey GAGTAGCATG AATTCTATTC ATATAGGGAA CCCAGGGAAT CCCAT-TCTC marmoset GAGTAGCATG AATTCTATTC ATATAGGGAA CCCAGGGAAT CCCAT---TT galago GAGAGGCGTG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT mouse_lemur GAGCATCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT lemur GAGCAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT rabbit GAGTAGCATG AATGCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT st_squirrel ---------- ---------- ---TAGGAAA CCCAGGGAAT CCCGT-CCTT guinea_pig GAGTGGCACA AGCTCTATTT ATAGAGGAAA CCCAGGGAAT CCCAT-CCTT rat GAGTAATATG AGTTCTATTT ATATAGGAAA CCCAGGCAAT CCCAA-TC-- mouse GAGTAATATG AGCTCTATTT ATATAGGAAA CCCAGGCAAT CCCAA-CC-- hedgehog GAGTAGCAAG AATTCTATTC ATATAGAAAA GTCAAGGAGT CCCAT-A-TT shrew ---------- ---------- ---TAGGAAA CCCAGGGAAT CCCAT-C-TT rfbat GAGTAGCATG AATTCTATTC ATATAGGAAT CCCAGGGAAT CCCAT-CCTT cpbat ---------- ---------- ---TAGGAAA TGCAGGGAAT CCCAT-CGTT cat GAGAGCCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT clouded_leopard GAGCGCCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-CCTT ferret GAGTAGCATG AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-TCTT dog GAGTAGCACG GATTCTATTC ATATAGGAAA CC-AGGGAAT CCCAT-TCTT pig GAGTACCATG AATTCTATTC ATATAGAAAG TCCAGGGAAT CCCAT-CCTT muntjak_indian ---------- ---------- ---TAGGGAA CCCAGGGAAT CCCAT-CCTT sheep ---------- ---------- ---TAGGAAA CCCAGGGAAC CCCAT-CTTT cow ---------- ---------- ---TAGGAAA CCCAGGGAAT CCCAT-CCTT horse GAGTAGCATG AATTCTATTC TTATAGGAAA CCTAGGGAAT CCCAT-CCCT armadillo GAGTGGCATG AACTCTATTC ATATAGGAAA CCCAGGGAAT CCC-T-CCTT elephant GAGTAGGATA AATTCTATTC ATATAGGAAA CCCAGGGAAT CCCAT-TCTT tenrec GAGTAGAACA AATTCTATTC ATATCGGAAA CCCAGGGAAT CCCAG-CCTC wallaby ---------- ---------- ---CAGAAAA GTCAGGGAAT CCCAT-CCTT monodelphis ---------- ---------- ---CAGGAAA AGCAGGGAAT CCCAT-CCTT opossum ---------- ---------- ---CAAGAAA GGCAGGGAAT CCCAT-CCTT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ------GTTT CTCTT-CT-- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTACAAAAA- -TATTTTCAT ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- chimp TTACAAAAA- -TATTTTCAT ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- gorilla TTACAAAAA- -TATTTTCAT ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TCACAAAAA- -TATTTTCAC ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- colobus_monkey TTATAAAAA- -TTTTTTCAC ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- vervet TTATAAAAA- -TTTTTTCAC ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- baboon TTATAAAAA- -TTTTTTCAC ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- macaque TTATAAAAA- -TTTTTTCAC ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- dusky_titi TTACAAAAA- -TATTTTCAC ACTCCCTT-G AAAAAGCAGA GTGGG-AAA- owl_monkey TTACAAAAA- -TATTTTCAC ATTCCCTT-T AAAAAGCAGA GTGGG-AAA- squirrel_monkey TTACAAAAA- -TATTTTCAC ACTCCCTT-T AAAAAGCAGA GTGGG-AAA- marmoset TTAAAAAAA- -TATTTTCAC ACTCCCTT-T AAAAAGCAGA GTGGG-AAA- galago TTGTAAAAA- -TATTTTCAC ACTCCCTT-T GAAGAGCAGA ATGGG-AAA- mouse_lemur TTACAAAAA- -TATTTTCAC ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- lemur TTATAAAAA- -TATTTTCAC ACTCCCTT-T AAAGAGCAGA GTGGG-AAA- rabbit TTACAAAAA- -TATTTTCAC ACTCCCTT-T GAAGCACAGG GTGGG-AAA- st_squirrel TTACAAAAA- -TATTTTCAC ACTCCCTT-T GAAAAGCAGA GTGGG-AAA- guinea_pig TTACAAAAA- -TATTTTCAC ACCCTTCC-T GAAGAGCAGA GTGAG-AAA- rat TTACAAAAA- -TATTCTCAC ACTCCTTT-T GCAAAG---- ---------- mouse TTCCAGAGA- -TATTCTCTC ACTCCTTT-T GCAAAG---- ---------- hedgehog TTTTACAGA- -TATTTTTGC ACTGACTT-T GAAGAGCAGA GTGAG-AAA- shrew CAACAAAAA- -TATTTTCAC ATTGCCTT-T GAAGAGCAGA GTGGG-AAA- rfbat TTAGAAAAA- -TATTTTCAC ATTCTCTT-T GAAGAGCCAA GAGGG-AAA- cpbat TTACAAAAA- -TATTTTCA- -GTTCCTT-T GATGAACCCA ATGGG-AAA- cat TCATAAAAA- -TATTTTCAC ACTCCCTT-T GAAGAGCAGA GTGGG-AAA- clouded_leopard TCATAAAAA- -TATTTTCAC ACTCCCTT-T GAAGAGCAGA GTGGG-AAA- ferret CCATAAAAAA ATATTCTCAC ACTCCCTT-T GAAGAGCAGA GTGGG-AAA- dog TTATAAAAA- -TATTTTCAC ACTCCCTT-T GAA------- ---------- pig TCACAAAAA- -TATTTTCAT ATTCCCTT-T GAAGAGCAAA GTGGG-AAA- muntjak_indian TAACAAAAA- -TATGTTCAC ATTCCCTT-T GAAAAGCAGA GTGGA-AAA- sheep GAACAAAAA- -TATGTCCAC ATTCCCTT-T GAAGAGCAGA GTGGA-AAA- cow TAACAAAAA- -TATGTTCCC ATTCCCTT-T GAAGAGCAGA GTGGA-AAA- horse TTACAAAAA- -TATTTTCAA ATTCTCTT-T GAAAAGCAGA GTGGG-AAA- armadillo TCACAAAAA- -TATTTTCAC ATTCTTTT-T GAAAAACAGA GTGGG-AAA- elephant TTACAAAAA- -TGTTTTCAC ACCCCTTT-G GAAGAGCAGA GTGGG-AAA- tenrec GGACAGAA-- -TATTTTCAC ACTCTGTT-T GAAGAGCAGA GTGGGGAAA- wallaby TTACAAACA- -TGTTTTCAC ACTCCCTCCT GAATAACTAA GTGGT-AAA- monodelphis TTTCAAACA- -TGTTTTCAC ACTCCCTTCT GAATAGCCAA GTGGC-AAA- opossum TTTCAAGCA- -TGTTTTCAC ACTCCTTTCT GAATAGCCAA GTGGC-AAA- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- -TATTTTACT AATCCATGGT AAAAAGAATA GCCCA-CACA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ------ATGT TGAGGAAATG --AGGCCTTC CTGTTTCTGC CACATGTGTT chimp ------ATGT TGAGGAAATG --AGGCCTTC CTGTTTCTGC CACATGTGTT gorilla ------ATGT TGAGGAAATG --AGGCCTTC CTGTTTCTGC CACATGTGTT orangutan ---------- ---------- ---------- ---------- ---------- gibbon ------ATGT TGAGGAAATG --AGGCCTTC CTGTTTCTGC CACATGTGTT colobus_monkey ------ATGT TGAGGAAATG --AGGCCTTC CTGTTTCTGC CGCATGTGGA vervet ------ATGT TGAGGAAATG --AGGCCTTC CTGTTTCTGC CGCATGTGGA baboon ------ATGT TGAGGAAATG --AGGCCTTC CTGTTCCTGC CACATGTGGA macaque ------ATGT TGAGGAAATG --AGGCCTTC CTGTTTCTGC CACATGTGGA dusky_titi ------ATGT TGAGGAAATG --AGGCCTTC CTGTTTCTGC CACATGTGAA owl_monkey ------ATGT TGAGGAAATG --AAGCCTTC CTGTTTCTGC CACATGTGAA squirrel_monkey ------ATGT TGAGGAAATG --AAGGCTTC CTGTTTTTGC CACATGTGAA marmoset ------ATGT TGAGGAAATG --AAGCCTTC CTGTTTCTGC CACATGTGAA galago ------ATGT TGAGGAAATT --AGGCCTTC CTGTTTCTTC CACATGTGAA mouse_lemur ------CTGT TGAGGAAACG --AGGCCTTC CTGTTGCTGC CACATGTGAA lemur ------CTGT TGAGGAAATG --AGGCCTTC CTGTTGCTGC CACATGTGAA rabbit ------ATGG GGCGGAAATG --AAGCCTTC CTGTCTCTGC CATGTGTGGA st_squirrel ------ATGC TACGGAAATG --AGTCTTTC CTGTTTCAGC CACATGTGGA guinea_pig ------ATGT TGCGGAAACA --AGTCCTTC CTGTTTCTGC CACATGTGGA rat --------GT TGCAGAACTG --TGCCCTTC CTGTTTCGGT CATGGGTGGG mouse --------GT TGCAGAACGG --TGCCCTTC CTGTTCCTGC CATGG-TGGG hedgehog ------ATGT TGAGGAAATG --AGACCTTC CTGTTTCTGC CACATGTGAA shrew ------ATGT TGAGGAAATG --AGACCTTC CTTTTTCTGC CACATGTGAA rfbat ------ACGC TGAGGAAACA --AGGCCTTC CTGTTTCTTC CACATGTGGA cpbat ------ATGT TAAGGAAATG --AGACTTTC TTGTTTCTTC CACATGCAGA cat ------ATGT TGAGGAAATG --AGACCTTC CTGTTTCTGC CACACGTGAA clouded_leopard ------ATGT TGAGGAAATG --AGACCTTC CTGTTTCTGC CACACGTGAA ferret ------ATGT TGAGCAAATG --AGGCCTTC CTGTTTCTGC CACATGTGAA dog ---------- -------ATA --AGGCTTTC CTGTTTCTCC CACATGTGGA pig ------ACGC TGAGGAAATG --AGGCCTTC CTGTTTCTGC CACATGTGTA muntjak_indian ------ATGC TGAGGAAATT --AGGCCTTC CTGTTTCTGC CAC--GTGTA sheep ------ATGC TGAGGAAATT --AGGCCTTC CTGTTTCTGG CACATGTGTA cow ------ATGC TGAGGAAATT --AGGCCTTC CTGTTTCTGC CACATGTGTA horse ------ATGT TGAGGAAATA --AGGCCTTC CTGTTTCTGC CACATGTGGA armadillo ------ATGT TGAGGAAATG --AGACTTTC CTGTTTCTGC CACATGTGGA elephant ------ATGT TGAGGAAATA --AGACCTTC CTGTTGCTGC CACATGTAGA tenrec ------ACGT TGAGGAAATT --CCGCCTTC CTGCTGCTGC CACATGTGGA wallaby ------GTAC TAAGGAAAT- --AGAACTTC CTGTT-CTGC CACATGTGGA monodelphis ------ATGC TAAGGAAAT- --AGAACTTC CTGTT-CTGC CACATGTGGA opossum ------ATGC TAAGGAAAT- --AGAACTTC CTGTT-CTGC CACATGTGGA platypus ---------- ---------- ---------- ---------- ---------- chicken TCACATATTC TGAGGAAATG ATAGAACTTC CTCTT-CTCT CACATCTGGA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- chimp TAATTATCCA GCTGCAGTTC CAAAATAAGA AAA-TTC--- ---------- gorilla TAATTATCCA GCTGTAGCTC CAAAATAAGA AAA-TTC--- ---------- orangutan ---------- ---------- ---------- ---------- ---------- gibbon TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- colobus_monkey TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- vervet TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- baboon TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- macaque TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- dusky_titi TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- owl_monkey TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- squirrel_monkey TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- marmoset TAATTATCCA GCTGCAGCTC CAAAATAAGA AAA-TTC--- ---------- galago TAATTATCCA GCTGCATCTC CAAAATAAGA AAA-TTC--- ---------- mouse_lemur TAATTATCCA GCTGCATCTC CAAAATAAGA AAA-TTC--- ---------- lemur TAATTATCCA GCTGCATCTC CGAAATAAGA AAA-TTC--- ---------- rabbit TAATCATCCA GCTGC-TATT CAAAATAAGA AAA-ATC--- ---------- st_squirrel TAATCATTCT GCTGC-TGTC CAAAACAAGA AAA-TTC--- ---------- guinea_pig TAATTATCCA GCTGC-TCTC CAAAATAAGA AAA-TTC--- ---------- rat TAATCATCCA GCTAC-TCTC CAAAGTGAGA AAG-TTC--- ---------- mouse TAATCATCCA GCTGC-TCTC TGAAGTGAGA AAG-TTC--- ---------- hedgehog TAATTATCCA GCTGCATCTC CAAAATAAGA ACA-TTC--- ---------- shrew TAATTATCCA GCTGCATCTC CAAAATAAGA AAG-TTC--- ---------- rfbat TAATTATCCA GCTGCATCTC CAAAATAAGC AAA-TTT--- ---------- cpbat TGATTATCCA GCTGCATCTC CAAAATAAGA AAA-TTC--- ---------- cat TAATAATCCA GCTCCATCTC CAAAATAAGA AAG-TTC--- ---------- clouded_leopard TAATAATCCA GCTCCATCTC CAAAATAAGA AAG-TTC--- ---------- ferret TAATAATCCA GCTGCATTTC CAAAATAAGG AAG-TTC--- ---------- dog TAATAATCCA GCTGCATCTC CAAAATAAGA AAG-TTC--- ---------- pig TAATTATCCA GCTGTATCTC CAAAATAAGA AAATTTT--- ---------- muntjak_indian TAATTATCGA GCTGCATCTC CAAAATAAGG AAG-TTC--- ---------- sheep CAATTATCGA GCTGCATCTC CAAAATAAGG AAG-TTC--- ---------- cow TAATTATCGA GCTGCATCTC CAAAATAAGG AAG-TTC--- ---------- horse TAATTATCCA GCTGCATTTC CAAAATAAGA AAA-TTC--- ---------- armadillo TAATTATCCA GCTGCATCTC CAAAATAAGA AAA-TCA--- ---------- elephant TAATTATCCA GCTGCATCTC A-AAATAGGA AAG-TTA--- ---------- tenrec TAATTAACCA GCTGTGTCTC C-AAATAAGA AAG-TTA--- ---------- wallaby TAATGAGCCA GCTGTATCTC CAAAATAAAA AAG-TTA--- ---------- monodelphis TAATGAGCCA GCTGTATCTC CAAAATAAAA AAG-TTA--- ---------- opossum TAATGAGCCA GCTGTATCTC CAAAATAAAA AAG-TTA--- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ACATTAGCAA GCTCAACCTC CAAAAAAAAA TAA-TTTACC ATGTTGTTTA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TTTC--ATCC GTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGATT chimp TTTC--ATCC TTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGATT gorilla TTTC--ATTC TTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGATT orangutan ---------- ---------- ---------- ---------- ---------- gibbon TTTC--ATCC TTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGATT colobus_monkey TTTC--ATCC TTGTAGCTGA GTATCAAA-- GGAAA----T TTGGGTGATT vervet TTTC--ATCC TTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGATT baboon TTTC--ATCC TTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGATT macaque TTTC--ATCC TTATAGCTGA ATATCAAA-- GGAAA----T TTGGGTGATT dusky_titi TTTC--ATCC TTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGTTT owl_monkey TTTC--ATCC TTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGTTT squirrel_monkey TTTC--ATCC TTGTAGCTGA ATATCAAA-- GGAAA----T TTGGGTGTTT marmoset TTTC--ATCC TTGTAGCTGA GTATCAAA-- GGAAA----T TTGGGTGTTT galago TTCCAAATCC TTGCAGCTGA GTATCAAA-- GGAAA----T TTGCATGTTT mouse_lemur TTTCAAATCC TTGCAGCTTT ATATCAAA-- GGAAA----C TTGCATGTTT lemur TTTCAAATCC TTGCAGCTGT ATATCACA-- GGAAA----C TTGCATGTTT rabbit TTTCCAATCC TTGCAGCTGA CTAGCAAA-- GGACA----T GTGCATGTCC st_squirrel TTTTAAATCC CTGTAGCCAT ATATTAAA-- GGAAA----T TAGCATGTTT guinea_pig TTTTAAATTC TTGAAGAAGA GTATCAAA-- GGAAA----T TTGCATGTTT rat TTTCACATCC TTCAGGCCGA ATATCAAA-- GAAAA----T GGG-ATGTTT mouse TTCCACATTC TTGAAGCTGA ATATCAAA-- GGAAA----C GGG-ATGTTT hedgehog TTTCAAATCC TCACAGTTGA ATATTAAA-- GCAAA----T GTGTATGTTT shrew TTTCAAATCC TTGCAGCTGA ATATCAAA-- GGAAAC---T ATGCATACTT rfbat TTTCAAATCC TTGCAACTGA ATATCAAA-- GGAAA----T TTGCATGTTT cpbat TTTCAAAGAC TTTCAGCTGA ATATCAAA-- GGAGA----T TTGCATGTTT cat TTTCAAA--- TTGCAGCTGA ATATCAAAGG GGAAA----T TTGTGTGTTT clouded_leopard TTTCAAA--- TTGCAGCTGA ATATCAAAGG GGAAA----T TTGTATGTTT ferret TTTCAAATCT TTGCAGCTGA ATATCAAAGG GGAAA----T TTGCATGTTT dog CTTCAAATCC TTGCAGCTGA ATATCAAAGG GGAAA----T TTGCATGTTT pig TTTCAAATCC TTGCAGCTGA ATATCAGA-- AGAAA----C TTGCATGTTT muntjak_indian TCTCAAATCC TTGCAGCTTA ATATCAAA-- GGAAA----T TTGCATGTTT sheep TCTCAAATCC TTGCAGCTGA ATATCAAA-- GGAAA----T TTGCATGTTT cow TCTCAAATCC TTGCAGCTAA ATATCAAA-- GGAAA----T TTGCATGTTT horse TTTCGGATTC TTGCAGCTGA ATATCAAA-- GGAAA----T TTGCACGTTT armadillo TTTCAAATCC TTGCAGTAGG ATATCAAA-- GGAAA----T TTGCGTGTTC elephant TTTCAAATCC TTGCAGCTGA GTATCAAA-- GGAAA----T TTGCAAGTTT tenrec TTTCAAATCC TTGCAGCTGA GTGTCAAA-- GGAAA----C TTGCATGTTC wallaby TTTCAAATCT TTGCTGCTGA ATATCAAA-- GAAAA----C TTACATGTCT monodelphis TTTCAAATCT TTGCTCCTGA ATATCAAA-- GAAAA----T TTGCATGATT opossum TTTCAAATCT TTGCTCCTGA ATATCAAA-- GAAAA----T TTGCATGTCT platypus ---------- ---------- ---------- ---------- ---------- chicken TTTCAGATCC TTTCAGA--- --ATTAAA-- GGAAATCTAT TTGCATGTTT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTAAAACTAT TT--TGGTAT CTGAG--A-- GAGGTAAACA --TTTTTCCA chimp CTAAAACTAT TT--TGGTAT CTGAG--A-- GAGGTAAACA --TTTTTCCA gorilla CTAAAACTAT TT--TGGTAT CTGAG--A-- GAGGTAAACA --TTTTTCCA orangutan ---------- ---------- ---------- ---------- ---------- gibbon CTAAAACTAT TT--TGGCAT CTGAG--A-- GAGGTAAACA --TTTTTCCA colobus_monkey CTAAAACTAT TT--TGGCAT CTGAG--A-- GAGGTAAACA --TTTTTCCA vervet CCAAAACTAT TT--TGGCAT CTGAG--A-- GAGGTAAACA --TTTTTCCA baboon CTAAAACTAT TT--TGGCAT CTAAG--A-- GAGGTAAACA --TTTTTCCA macaque CTAAAACTAT TT--TGGCAT CTGAG--A-- GAGGTAAACA --TTTTTCCA dusky_titi CTAAAAGTAT TT--CGGCAT CTGAG--A-- GAGGT----A --TTTTTCCA owl_monkey CTAAAACTAT TT--TGGCAT CTGAG--A-- GAGGT----A --TTTTTCCA squirrel_monkey CTAAAACTAT TT--TGGCAT CTGAG--A-- GAGAT----A --TTTTTCCA marmoset CTAAAACTAT TT--TGGCAT CTGAG--A-- GACGT----A --TTTTTCCA galago CTAAAACGAT TT--TGGCAT CTGAG--A-- GAGGTAAATA --TTTTTCCA mouse_lemur GTAAAACCAT TT--TGGCAT CTGAG--A-- GAGGTAAATA --TTTTTCCA lemur GTAAAACTAT TT--TGGCAT CTCAG--A-- GAGGTAAATA --TTTTTCCA rabbit CTAAAACTAT TT--TGGCAT CTGAG--A-- GAGGTAAATA --TTTTTCCA st_squirrel CTGGAAGTAT -------AAT CTGAG--T-- GAGGTGAATA --TTTTTCCA guinea_pig CTAAAATTAT -------AAC CTGAG--A-- GAGTTGTGTA --TTTTTCCA rat CCGAAACTCT -------AAA CTGAC--A-- GAGGTAAATA --TTTTCCCA mouse CTAAAACTCA -------AAT CTGAC--A-- GAGGTAAATA --TTTTCCCA hedgehog CTAAGACTAT TG--TGGTAT CTGAG--A-- AAGGTAAATA --TTTTTCCA shrew CTAATACTAT TC--TGGCAT CTGAG--A-- AAGGTAAATA --TTTTCCCA rfbat CTAAAACTAT TT--CGACAT CTGAG--A-- GAGGTAAATA --TTTTTCCA cpbat CTAAAATTAC GT--TGGCGT CTGAG--A-- GAGGTAAATA --TTTTT-CA cat CTAAAACTAT TT--TGGCAT CTGAG--A-- GAGGTAAATA --TTTTCCCA clouded_leopard CTAAAACTAT TT--TGGCAT CTGAG--A-- GAGGTAAATA --TTTTCCCA ferret CTAAAACTAT TT--TGGCCT CTGAG--A-- GAGGTAAATA --TTTTTCCA dog CTAAAACTAT TT--TGGCAT CTGAG--A-- GCGGTAAATA --TTTTTCCA pig CTAAAATTAC TT--TGGCAT CTGGG--A-- GAGATAAATA ---TTTTCCA muntjak_indian CTGAAACTAT TT--TGGCTT CTGGG--A-- GAGCTAAATA ---TTTTCCA sheep CTCTAACTAT TT--TGGCTT CTGGG--A-- GAGCTAAATA ---TTTTCCA cow CTTTAACTAT TT--TGGCAT CTGGG--A-- GAGCTAAATA ---TTTTCCA horse CTGAAACTAT TT--TGGCGT TTGAG--A-- GAGGTAAATA --TTTTTCTG armadillo TTAAAACTAT TT--TGGCAT CTGAG--A-- GAGGTAAATA --TGTTTCCA elephant CTGAAACTAT TT--TGACCT CTGAG--G-- GAGGTAAATA --TTTTTCCA tenrec CTAAAACTAT TT--TGGCCT CAGAG--A-- GGTG-AAATA --TTATTCCA wallaby CTGAAGCCAC TT--TGGCAT CTGAGACA-- GAGGTATATT --TTTTTCCA monodelphis CTAAAGCCAT TT--TGGCAT CTGAGACA-- GAGGTATATT --TTTTTCCA opossum CTAAAGCCAT TT--TGGCAT CTGAGACA-- GAGGTAAATT TCTTTTTCCA platypus ---------- CCGCTGGCTT CTGAA--GCC TAGGTAAATG TCTTTTTCCA chicken CTAAAGGCAT ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CAAACACTCC CAGATCAGGA ATTTGTG--- -TGACTAAGG CATGATGCAT chimp CAAACACTCC CAGATCAGGA ATTTGTG--- -TGACTAAGG CA-GATACAT gorilla CAAACACTCC CAGATCAGGA ATTTCTG--- -TGACTAAGG CATGATACAT orangutan ---------- ---------- ---------- ---------- ---------- gibbon CCAACGCTCC TAGATCAGGA ATTTGTG--- -TGACTAAGG CATGATACAT colobus_monkey CAAACACTCC TAGATCAGGA ATTTGTG--- -TGACCAAGA CATGATACGT vervet CAAACACTCC TAGATCAGGA ATTTGTG--- -TGACTAAGA CATGATACAT baboon CAAACACTCC TAGATCAGGA ATTTGTG--- -TGACTAAGA CATGATACAT macaque CAAACACTCC TAGATCAGGA ATTTGTG--- -TGACTAAGA CATGATACAT dusky_titi CAAACACTCC TAGATCAGGA ATTTGTG--- -TGACTAAGG CATGATACAT owl_monkey CAAACACTCC TAGATCAGGA ATTTGTG--- -TGACTAAGG CATGATACAT squirrel_monkey CAAACACTCC TAGATCAGGA ATTTGTG--- -TGACTAAGG CATGATACAT marmoset CAAACACTCC TAGATCAGGA ATTTGTG--- -TGACTAAGG CATGATACAC galago CAAACACTCC TAGTTGAGGA ATTTATG--- -TGACTAAGG CATGATACAT mouse_lemur CAAACACTCC TAAATGAGGA ATTTATG--- -TGACTAAGG CATGATACAT lemur CAAACACTCC TAAATGAGGA ATTTATG--- -TGACTAAGG CATGATACAT rabbit CAAATACTCC TAGATGAGGA ATTTATG--- -TGACTAAGC CATGATGCAT st_squirrel CAAACACTCC TAGATCAGGA ATTTAGG--- -TGACTAACG CATGATACAT guinea_pig CAAACACTCC TAAATCAGGA ATTTATC--- -TGACTAAGG CATGATATGT rat CAAACACTCC TAAGTCAGGA ATTTATG--- -TGACTAACT CATGATACAT mouse CAAACACTCC TAAGTCTGGA ATTTATG--- -TGACTAACT CATGATACAT hedgehog CAAACACTCC TAGAACAGGA ATTTGTG--- -TGACTAAGG CATGAGACAT shrew CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTAAGG CATAAAATAT rfbat CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTAAGG CACGGTACAT cpbat AAAACACTCC TAAACCAGGA ATTTATG--- -TGACTCAGG CATGATACAT cat CAAACACTCC TAGATCAGGA ATTTATGTAA CTGACTAAAG CATGATACAT clouded_leopard CAAACACTCC TAGATCAGGA ATTTATGTAA CTGACTAAAG CATGATACAT ferret CAAACACTCC TAGATCAGGA ATTTATGTAA CTGACTAAGG CATGATGCAT dog CAAACACTCC TAGATCAGGA ATTTATGTAA CTGAGTAAGG CATGATACAT pig CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTAAGA AATGATACAT muntjak_indian CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTAAGG AGTGACACAT sheep CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTAAGG AGTGACACAT cow CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTAAGG AGTGACACAT horse CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTAAGG CAAGATACAT armadillo CTAACACTCC TAGACCAGGA ATTTATG--- -TGACTAAGG CATGATACAT elephant CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTAAGG CATGATACAT tenrec CAAACACTCC TAGATCAGGA ATTTATG--- -TGACTCAGG CATGCTAGGT wallaby CAAACACTCC CACATCAGGA ATTTATG--- -TGACTAAGA CATGAGACAT monodelphis CAAACACTCC CAGATCAGGA ATTTATG--- -TGACTAAGA CATGATACAT opossum CAAACACTCC CAGATCAGGA ATTTATG--- -TGACTAAGA CATGATACAT platypus CAAACACTCC TACACCAGGA ATTTGTG--- -TGACTAAGA AATGGGGCAG chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AACTGA---- ---------- ---------A CTTAATAAAA A---C---AG chimp AACTGA---- ---------- ---------A CTTAATAAAA A---C---AG gorilla AACTGA---- ---------- ---------A CTTAATAAAA A---C---AG orangutan ---------- ---------- ---------- ---------- ---------- gibbon AACTGA---- ---------- ---------A CTTAATAAAA A---C---AG colobus_monkey -ACTGA---- ---------- ---------A CTTAATAAAA A---G---AG vervet AACTGA---- ---------- ---------A CTTAATAAAA A---C---AG baboon AACTGA---- ---------- ---------A CTTAATAAAA A---C---AG macaque AACTGA---- ---------- ---------A CTTAATAAAA A---C---AG dusky_titi AACTGA---- ---------- ---------A CCTAATAAAA A---C---AG owl_monkey AACTGA---- ---------- ---------A CCTAATAAAA A---C---AG squirrel_monkey GACTGA---- ---------- ---------A CCTAATAAAA A---C---AG marmoset AACTGA---- ---------- ---------A CCTAATAAAA A---C---AG galago AACCCAAG-- GTTCT----- ---GATGTTA CTGAATCAAA A---C---AG mouse_lemur AACTGAAG-- GTTTT----- ---GATATGA CTTAATAAAA A---C---AG lemur AACTGAAG-- GTTTT----- ---GATATAA CTTAATAAAA A---C---AG rabbit AAATGAAG-- CTT------- ---TTTATGA CTTAAGAAAA A---C---AG st_squirrel AACTGGTT-- TTT------- -----GATGA TGTAACAAAT A---C---AG guinea_pig AACTGAAG-- CTCTG----- ---GATATGA ---------- ---------- rat AACTGAAG-- TTT------- ---GAGATAA CTTAAGAAAA A---C---AG mouse AACTGAAG-- TTT------- ---GAGATGA CTTAAGAAAA A--GC---AG hedgehog AGCCTCAG-- CTTTCTTTTT GTGTGTGTGA CTTAATGACA A---C---AA shrew AACTGAAG-- TTT------- ---AATATGA ---------- ---------- rfbat AACTGAAG-- TTTTT----- ---GATAGGA CTTAAAAAAA AACAC---AG cpbat AACTGAGG-- TTTCT----- ---GATATGA TTTAATTAAA A---C---AG cat AAC--AAG-- CTTTG----- ---GATATGA CTTAATAAAA A---C---AA clouded_leopard AAC--AAG-- CTTTG----- ---GATATGA CTTAATAAAA A---C---AA ferret AAC--AAG-- TTTTT----- ---TATGTGA CTTAATAAAA G---C---AG dog AAC--AAG-- TTTTT----- ---GGTATGA CTTAATAAAA A---C---AG pig AACC-AAA-- TTTTT----- ---TATATGA TTTAATAAAA A---C---AG muntjak_indian AACT-GAA-T TTTTT----- ---TATATGA CTTAATAAAA A---C---AG sheep AACT-GAATT TTTTT----- ---TATATGA CTTAATAAAA A---C---AG cow AACT-GAATT TTTTT----- ---TATATGA CTTAATAAAA A---C---AG horse AACT-GAT-- GTTTT----- ---TA-ATGA CTTACTAAAA A---C---AG armadillo AACCGAAG-C TTTTT----- ---TATATGA CTTAATAAAA A---C---AG elephant AGCTAGAG-- TTTTT----- ---TATATGA CTTAATAAAC A---C---AG tenrec AACTATAG-- TTTTT----- ---GATATGA TTTAATAAAC A---G---AG wallaby GACTGAAG-- ATCAG----- ---GATGTAA ----AGAAAA A---AAGGAG monodelphis GACTGAAG-- ATCAG----- ---GATGTAA ----GGAAGA A---A---AG opossum GACTGAAG-- ATCAG----- ---GATGTGA ----TGAAGA A--------- platypus GATGGGAA-- AATTT----- ---GACGCCA ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GGATTTAGAT ATGATTTTAA TTTACGG--- -GTATATTTT ATTTAGAATC chimp GGATTTAGAT ATGATTTTAA TTTACGG--- -GTATATTTT ATTTAGAATC gorilla GGATTTAGAT ATGATTTTAA TTTATGG--- -GTATATTTT ATTTAGAATC orangutan ---------- ---------- ---------- ---------- ---------- gibbon GGATTTAGAG ATGATTTTAA TTTACGG--- -GTATATATT ATTTATAATC colobus_monkey GGATTTAGAT ATGATTTTGA CTTATGG--- -GTATATTTT GTTTAGAATT vervet GGATTTACAT ATGGTTTTGA TTTATGG--- -GTATATTTT ATTTAGAATC baboon GGATTTAGAT ATGATTTTGA TTTATAG--- -GTATATTTT ATTTAGAACC macaque GGATTTAGAT ATGATTTTGA TTTATGG--- -GTATATTTT ATTTAGAATC dusky_titi GGATTTAGAT ATTA-TTTAA TTTATGG--- -GTATACTTT ATTTAGAATC owl_monkey GGATTTAGAT ATTA-TTTAA TTTATGG--- -ATATATTTT ATTTAGAATC squirrel_monkey GGATTTCGAT ATTA-TTTAA TTTATGG--- -GTATATTTT ATTTAGAATC marmoset GGATT-AGAT ATTA-TTTAA TTTATGG--- -ATATATTTT ATTTAGAATC galago GGATTTAGAT GTAATTTTAA TTTATGA--- -GTAGATTTT ATTTAGAAAC mouse_lemur AGATTTGGAT ATAATTTTAA TTTATGG--- -GTATATTTT ATTTAGAATC lemur GGATTTGGAT ATAATTTTAA TTTATGG--- -GTATATTTT ATTTAGAATC rabbit AGGCCTAGAT ACAATTTTAA TTTATGG--- -GTATATTTT ATTTAGAATC st_squirrel GGACTTGGAT ATAATCTTCA TTTATGGATT TGTGTATTTT ATCTAGAACC guinea_pig ---------- ----TTTTAA TTTATGG--- -AGGTATTCT ATTTAGAAGT rat GGACTTAGAT ATAATTTCCC TTGACTG--- -GCATATTTT A-TTAGAATC mouse GGCTTTAGAT ATAATTTCAC TTGATTG--- -GCATAGTTT A-TTAGAATC hedgehog AGATCTAGAC AAAATTTTAA TTTATGA--- -GCATATTTT ATTTAGATTC shrew ---------- ----GTTTAA TTTATGA--- -GTATATTTT ACTTAGCATT rfbat GGATTTAGAT GTAATTTTAA TTTATGA--- -GTATATTTT ATTTCAAATC cpbat GGATTTAGAT ATAATTTTAA TTTATGA--- ---CTACTTT TTTTAGAATT cat GGACTTACAT ATAATTTTAA TTTATGA--- -GTATATTTT ATTTAGAATC clouded_leopard GGACTTACAT ATAATTTTAA TTTATGA--- -GTATATTTT ATTTAGAATC ferret GGATTTAGAT ATAATTTTAA TTTATGA--- -GTATATTTT ATTTAGAAAC dog GGAtttAGAT ATAATTT-AA TTTATGA--- -GTATATTTT ATTTAGAAAC pig AGATTTAGAT GTAATCTTAA TTTATGA--- -GTATATTTT ATTTGGAATC muntjak_indian -GATTTAGAT ATAATTTTAA TTTATGA--- -GTATATTTT ATCTGGAATC sheep -GATTTAGAT ATAATTTTAA TTTATGA--- -GTATATTTT ATTTGGAATC cow -GATTTAGAT ATAATTTTAA TTTATGA--- -GTATATTTT ATTTGGAATC horse GGATCTAGAT ATAATTTTAA CTTACGA--- -TTATATTTT ATTTAGAATC armadillo AAATTTAGAT ATAATTTTAA TTTATGT--- -GTATATTTT ATTTAGAATC elephant AGATTTGGAT ATAATTTTAA TTTATGT--- -GTGTATTTT ATTTAGAATC tenrec AGATTTTGAT ACTATTTTAA TTTATGT--- -A-GTTTTTT TTTCAGAATC wallaby AAG---AGAT TTAATTTCAA --CATGT--- -ATATATTCT AGTTGAGGTC monodelphis AAG---AGGA TTAATTTTAG TTTATGT--- -GTATATTAT AGTTAATGTC opossum --G---AGGA TTAATTTCAC TTTATGT--- -ATATATTGT AGTTAATGTC platypus ---------- ----TTTACA TCTGTGT--- -GTATATGCT GCTTAGGTCT chicken ---------- ----CTTTTA AAAATAG--- -CTTCGTTTT ATTTCAAGAC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ACAATTGTTT TTA------- TAATACAATA ATAACAAAAC CGTCACTCTG chimp ACAATTGTTT TTA------- TAATACAATA ATAACAAAAC CGTCACTCTG gorilla TCAATTGTTT CTA------- TAATACAATA ATAACAAAAC CATCACTCTG orangutan ---------- ---------- ---------- ---------- ---------- gibbon ACAATTGTTT TTA------- TAATACAACA ATAACAAAAC TGTCACTCTG colobus_monkey ACAATTGTTT TTA------- TAATACAACA ATAACAAAAC TATCACTCTG vervet ACAATTGTTT TTA------- TAATACAACA ATAACAAAAC TGTCACTCTG baboon ACAATTGTTT TTA------- TAATACAACA ATAACAAAAC TGTCACTCTG macaque ACAATTGTTT TTA------- TAATACAACA ATAACAAAAC TGTCACTCTG dusky_titi ACAATTGCTT TTA------- TAATACAACA ATAACAAAAC TGTCACTCTG owl_monkey ACAATTGTTT TTA------- TAATACAACG ATAACAAAAC TGTCACTCTG squirrel_monkey ACAATTGTTT TTA------- TAATACAACA ATAACAAAAC TGTCACTCTG marmoset ACAATTGTTT TTA------- TAATACAACA ATAACAAAAT TGTAACTCTG galago ACAATTGTTT TTA------- TAATACAGCA ATAACAAAAA GGTCACTCTG mouse_lemur ACAATTGTTT TTA------- TAATACAGCA ATAACAAAAC TGTCACTCTG lemur ACAATTGTTT TTA------- TAATACAGCA ATAACAAAAC TGTCACTCTG rabbit ACAATTGTTT TTA------- TAATACAGCA ATAACAAAAC TGTCACTCTG st_squirrel ACAATTGTTT TTA------- TAATACAACA ATAACAAATC TGTCACTATG guinea_pig ACAATTGTTT TTA------- TAGTACAACA ATAACAAATC TGTCCGTCTG rat ACAATTGTTT TTA------- CAGTGTAGCA ACAACAAGTC TGCTGCAG-- mouse ACAGTTGTTT TTA------- TAGTGCAGCA ATAACAAATC TGCTACAGTG hedgehog ACAATAGTTT TCA------- TATTGCAATA ATATCCAAAC TGTCACTCTA shrew ACAATTCATT TCA------- TAATATTGTA ATAACAAAAC TGTCACTCTG rfbat ACAATTGTTT TCA------- TAATACAGCA ATAACAAAAC TGTCACTCTG cpbat ACAATTGTTT TCA------- TAATACAGCA ATAACAAAAC TGTCAAGCAG cat ACAATTGTTT TCA------- TAATACAATA ATAACAAAAT TGTCACTCTG clouded_leopard ACAATTGTTT TCA------- TAATACAATA ATAACAAAAT TGTCACTCTG ferret ACAATTGTTT TCA------- TAATATAGCA ATAACAAAAT TGTCACTCTG dog ACAATTGTTT TCA------- TAATACAGCG ATAACAAAAT TGTCACTCTG pig ACAATTGTTT CCA------- TAATACAACA ATAACAAAAC TGTCCCTCGG muntjak_indian ACAATTGTTT TCA------- TAATATAGCA ATAACAAAAC TGTCACTCTG sheep ACTATTGTTT TCA------- TAATACAGCA ATAACAAAAC TGTCCCTCTG cow ACAATTGTTT TCA------- TAATACAGCA ATAACAAAAC TGTCACTCTG horse ACGATTGTTT TCA------- TAATGCAGCA ATAACAAAAC TGTCACTCTG armadillo ACAATTGTTT TTT------- TAATACAGCA ATAAC-AAAC CGTCACTCCA elephant ACAATTGTTT TCA------- TGATACAGCA ATAACAAAAC TATAACTCTG tenrec CCAATTGTTT TCA------- TAATATAGCA ATAACAAAAC CATCACTCTG wallaby ACTATTGTAT TCT------- -----TCATC ATAACAAAAA TGTCACCCAG monodelphis ACTATTGTGT TCT------- TAATATAATT ATAACAA-AA TGTCATACAG opossum ACTATTGTCT TCT------- TAATATAATA ATAACAATAA TGTCATGCAG platypus GCTATTGTTT GTAACACAGC AAACACAGCA ATAACAGAAC TGTACCACCA chicken ACAGATGTTA GCA------- TAAGACATCA CTAACAGATC TCTCTGTCTG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC chimp AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC gorilla AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC orangutan ---------- ---------- ---------- ---------- ---------- gibbon AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC colobus_monkey AATAAACAGG AAT--ATATG TTT-ATG--T TGCAC--AGT AACTTGTTCC vervet AATAAACAGG AAT--ATATG TTT-ATG--T TGTAT--AGT AACTTGTTCC baboon AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC macaque AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC dusky_titi AATAAACAGG AAT--ATATG TTT-ACG--T TGTAC--AGT AACTTGTTCC owl_monkey AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC squirrel_monkey AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC marmoset AATAAACAGG AAT--ATATG TTT-ATG--C TGTAC--AGT AACTTGTTCC galago AATAAACAGG AAT--ATATG TTT-ATG--T TGTAT--AGA CTCTTGTTCC mouse_lemur AATAAACAGG AAT--ATATG TTT-ATG--T TGTAT--AGT AACTTGTTCC lemur AATAAACAGG AAT--ATATG TTT-ATG--T TGTAT--AGT GACTTGTTCC rabbit AATAAACAGG AAT--ATATG TTT-ATG--T TATAC--AGT AACTTGTTCC st_squirrel AATAAACAGG AAT--ATATG TTT-ATG--T TGTAG--AGA AACTTGTTCC guinea_pig AATAAACAGG AAT--ATATG TTT-ATG--T TGCAC--AGT AACTTGTTCC rat AGTAAACAGG AAT--ACATG TTTGATG--T TGAGC--AGA AACTTGTTCC mouse AATAAACAGG AAT--TCATG TTTTATG--T TGAGC--AGA AACTTGTTCC hedgehog AATAAACAGG AAT--GTATG ---------T TGTAC--AGT CATTTGTTCC shrew AATAAACAGG AAT--ATATG ---------- TGTGC--AGT GGCTTGTTCC rfbat AGTAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACATGTTCC cpbat AATAAACAGG AAT--ACGTG TTT-ATG--T TGTAC--AGT AACTTGTTCC cat AATAAACAGG AAT--ATATG TTT-ATG--T TATAC--AGC AACTTGTTCC clouded_leopard AATAAACAGG AAT--ATATG TTT-ATG--T TATAC--AGC AACTTGTTCC ferret AATAAACAGG AAT--ATATG TTT-ATA--T TGTAC--AGT AATTTGTTCC dog AATAAACAGG AATGTATATG TTT-ATA--T TATAC--AGT AACTTGTTCC pig AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT AACTTGTTCC muntjak_indian AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT TACTTGTTCC sheep AATAAACAGG AAT--ATATG TTT-ATG--T TGTAT--AGT TACTTGTTCC cow AATAAACAGG AAT--ATATG TTT-ATG--T TGTAC--AGT TACTTGTTCC horse AATAAACAGG AAT--CTATG TTT-ATG--C TGTAC--AGT AACTTGCTCC armadillo AGTAAACAGG AAT--ATATG TTT-ATC--T TGTAT--AGT AGTTTATTCC elephant AATAAACAGG AAT--ATATG TTT-ATA--C TGTAC--AGT AACTTGTTCC tenrec AATAAACAGG AAT--ACATG TTT-ATA--C TGTAC--AGT ATCTTGTTCC wallaby AATAAACAGG ACT--CTATG TTT-ACA--T TATAT--AGT AACTTGTTCC monodelphis AATAAACAGG ACC--TAAAG TTT-ACA--T TATAC--AGG AACTTGTTCC opossum AATAAACAGG ACC--TAAAG TTT-ACA--T TATAC--AGG AACTTGTTCC platypus AGTAAACAGG AAT--GTGTG TTT-ATG--T TGAATTGAGT AACTTGTTCC chicken AATAAACAGG AAT--CTGTG TTT-ATGCAC GATAC--AGG GAATTGTG-T fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAGGAGTT-- ----ATTAAA ACTGTAAACC AGACT----- ---TT----- chimp AAGGAGTT-- ----ATTAAA ACTGTAAACC AGACT----- ---TT----- gorilla AAGGAGTT-- ----ATTAAA ACTGTAAACC AGACT----- ---TT----- orangutan ---------- ---------- ---------- ---------- ---------- gibbon AAGGAGTT-- ----ATTAAA ACTGCAAACC AGACT----- ---TT----- colobus_monkey AAGGAGTT-- ----ATTAAA ACTGTAAACC AGACT----- ---TT----- vervet AAGGAGTT-- ----ATTAAA ACTATAAACC AGACT----- ---TT----- baboon AAGGAGTT-- ----ATTAAA ACTGTAAACC AGACT----- ---TT----- macaque AAGGAGTT-- ----ATT-AA ACTATAAACC AGACT----- ---TT----- dusky_titi AAGGAGTT-- ----ATTAAA ACTGTAAACA AGATT----- ---TT----- owl_monkey AAGGAGTT-- ----ATTAAA ACTGTAAACA AGATT----- ---TT----- squirrel_monkey AAGGAGTT-- ----ATTAAA ACTGTAAACA AGATT----- ---TT----- marmoset AAGGAGTT-- ----ATTAAA ACTGTAAACA AGATT----- ---TT----- galago AAAGAATT-- ----ATTAAA ACTGTAAACC AGGCT----- ---TT----- mouse_lemur AAAGAGTT-- ----ATTAAA ACTGTAAACC AGGCT----- ---AT----- lemur AAAGAGTT-- ----ATTAAA ACTGTAAGCC AGGCT----- ---TT----- rabbit AAGGAGTT-- ----GCTAAA ACTGTAAACC AGGTC----- ---TT----- st_squirrel AAGGAGTT-- ----ATTAAA ACTGCAAATC AAGCT----- ---TT----- guinea_pig AAGGAGTT-- ----ACTAAA ACTGCAAACC AAGCT----- ---TT----- rat AAGGCATT-- ----ATTTAA ACTGCAAAGC AATCT----- ---TT----- mouse AAGGCATT-- ----ATTTAA ACTGCAAACC AATCT----- ---TT----- hedgehog AAGGGGTT-- ----TTAAAA ATTGTAAACC AGGCT----- ---TT----- shrew CAGGAGTT-- ----CT-TAA ACTGTAAACC AGGCT----- ---TC----- rfbat AAGGAGTT-- ----ATGAAA ACTGTAAACG AGGCT----- ---TT----- cpbat AAGGAGTT-- ----ATTAAA ACTGTAAACC ATGCT----- ---TT----- cat AAGGAGTT-- ----ATTAAA ACTGTAAACC AGGCT----- ---TT----- clouded_leopard AAGGAGTT-- ----ATTAAA ACTGTAAACC AGGCT----- ---TT----- ferret AAGGAGTT-- ----ATTAAA ACTATAAACC AGGCT----- ---TT----- dog AAGGAGTT-- ----ATTAAA ACTGTAAACT AGGCT----- ---TT----- pig AAAGAGTT-- ----ATTGAA ACTCTAAACC AGGCT----- ---TT----- muntjak_indian AAGGAGTT-- ----ATGGAA ACTGTAAACC AGGAT----- ---TT----- sheep AAGGAGTT-- ----ATGGAA ACTCTAAACC AGGAT----- ---TT----- cow AAGGAGTT-- ----ATGGAA ACTCTAAACC AGGAT----- ---TT----- horse AGGGAGTT-- ----ACTAAA ATTGTAAACC AGGCT----- ---TT----- armadillo AAGGCATT-- ----TTTAAA ACTATAAACC AGGAT----- ---TT----- elephant AAGGAGTT-- ----ATTAGA ACTATAAACC AAGCT----- ---TT----- tenrec ACAGAGTT-- ----ATTGAA ATTGTAAACC AAGCT----- ---TT----- wallaby AAGGGATA-- ----ATTATA ATTGTAAAT- -GTCT----- ---TC----- monodelphis AAGGAATA-- ----ATTAGG ATTGTAAACT AGTCT----- ---TC----- opossum AAGGGATA-- ----ATTAGA ATTGTAAACT AGTCT----- ---TC----- platypus AAGGGATA-- ----CTTTGG ATTGGGCCTG AAACT----- ---TTGGCTC chicken AGGGAGTTCT CCTCATTAAA ACGGTAAACT AAACCCAGCT TAATT----- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---ACAGAAG GCAGAGGCAA AAGGAAAGCA TATCTTATCC -TGCAGTGCA chimp ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA gorilla ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA colobus_monkey ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA vervet ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA baboon ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA macaque ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA dusky_titi ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGGGCA owl_monkey ---ACAGAAG ACAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA squirrel_monkey ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA marmoset ---ACAGAAG GCAGAGGCAA AAGGAAAGCA TATCTTATCC -TGCAGTGCA galago ---ACAGAAG GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGAAGGGCA mouse_lemur ---ACAGGAG GC-TAGGGAA GAGGAAAGCA TATCTTATCC -TGAAGTGCA lemur ---ACAGAAG GCAGAGGCAG GAGGAAAGCA TATCTTATCC -TGAAGTGCA rabbit ---CCAGAAG GCAGAGGCAA GAGGAAAGCA TATCTCATCC -TGCAGTGCA st_squirrel ---ACAGAAG GCAGAAGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA guinea_pig ---TCAGAAA GCAGAGGCTA AAGGAAAGCA TATCTTATCC -TGCAGTGCA rat ---ACAGAAG GTAGAGGCAA GAGGAAGGCA TATCTTATCC TTGCAGTACA mouse ---ACAGAAG GTAGAGGCAA GAGGAAGGCA TATCTTACCC TTCCAGTATA hedgehog ---ACAGAAA GCAGAGGCAA AAGGAAAGCA TATCTTATCC -TGCAGTGCA shrew ---ACAGAGG GCAGA-GCAA AAGGGAAGCA TATCTTATCC -TGCAGCACA rfbat ---ACAGAAG ACAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA cpbat ---ACTGAAG ATAGAGGCAA GAGGAAAGCT TATCTTATCC -TGCAGTGTA cat ---ACAGAAG GCAGAGGAAA GAGGAAAATA TATCTCATCC -TGCAGTGCA clouded_leopard ---ACAGAAG GCAGAGGAAA GAGGAAAATA TATCTCATCC -TGCAGTGCA ferret ---ACAGAAG GCAGGGGAAA G-------TA TATCTCATCC -TGCAGTGCA dog ---ACAGAAG GCAGAGGAAA GAGGAAAGTA TATCTCATCC -TGCAGTGCA pig ---ACAAAAG ACAGAGGCAA GAGGAAAGCA TATCTTATTC -TGCAGTGCA muntjak_indian ---ATAAAAG ACACAGACAA GAGGAAAGCA TATCTCATCC -TGCAGTGCA sheep ---ACAAAAG ACACAGACAA AAGGAAAGCA TATCTCATCC -TGCAGTGCA cow ---ACAAAAG ACACAGACAA GAGGAAAGCA TATCTCATCC -TGCAGTGCA horse ---AGAGAAG GCAGAGGAAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA armadillo ---ACAGAAG GCAAAGGCAA GAGGAAAGCA TATCTCATCC -TGCAGTGCA elephant ---ACAGAAA GCAGAGGCAA GAGGAAAGCA TATCTTATCC -TGCAGTGCA tenrec ---ACAGAAA GCAGAGGCGA GAGGAAAACA TATCTTATCC -TGCAGGGCG wallaby ---TCA---- ---------A AAGGAAAGTA TATCTTATCC -TGCAGGGCT monodelphis ---TCC---- ---------A AAGGAAAGCA TATCTCATCC -TGCAGGGCT opossum ---TCC---- ---------A AAGGAAAGGA TATCTCATCC -TGCAGGGCT platypus CCCATAGAGC TCAGAAGCAA AAGGAAAGTA TATCTTATCC -TGCAGGACG chicken ---ACTGCTT G-AAAGCCAA ATGGGAAGTA TATCTTATCC -TACAGGACA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GATGAAGATA TCAAAATTCC ---TAAATTT AAAGCAGTAA T-------AA chimp GATGAAGATA TCAAAATTCC ---TAAATTT AAAGCAGTAA T-------AA gorilla GATGAAGATA TCAAAATTCC ---TAAATTT AAAGCAGTAA T-------AA orangutan ---------- ---------- ---------- ---------- ---------- gibbon GATGAAGATA TCAGAATTCC ---TAAATTT AAAGCAGTAA T-------AA colobus_monkey GATGAAGATA TCAAAATTCC ---TAAATGT AAAGCAGTAA T-------AA vervet GATGAAGATA TCAAAATTCC ---TAAATGT AAAGCAGTAA T-------AA baboon GATGAAGATA TCAAAATTCC ---TAAATGT AAAGCAGTAA T-------AA macaque GATGAAGATA TCAAAATTCC ---TAAATGT AAAGCAGTAA T-------AA dusky_titi GATGAAGATA TCAA-ATTTC ---TAAAGTT AAAGCAGTAA T-------AA owl_monkey GATGAAGATA TCAAAATTTC ---TAAATTT AAAGCAGTAA T-------AA squirrel_monkey GATAAAGATA TCAAAATTTC ---TAAATTT AAAGCAGTAA T-------AA marmoset GATGAAGATA TCAGCATTTC ---TAAATGT AAAGCAGTAA T-------AA galago GATGAAGATA TCAAAATTTC ---TAAATTT AAAGTAGTAA T-------AT mouse_lemur GATGAAGATA TCAAAATTCC ---TAAAGTT AAAGCAGTGA TTTAAAAAAA lemur GATGAAGATA TCAACATTCC ---TAAATTT AAAGCAGTAA C---AAAAAA rabbit GACAAAGATA TCAAAATTCC ---TAAATTT AAAATAATAA T-------CA st_squirrel GATAAAGATA TCAAAATGCC ---TAAATTT AAAGCAGTAA T-------AA guinea_pig GATGAAGATA CCAAAATTCC ---TAAACTT AAAACAATAA T-------GA rat GATGAAGAGA TCAAAGTCCC ---TGAAGTC AAAACAGTAA T-------AA mouse GATGAAGAGA TCAAAATCCC ---TAAAGTC AAAGCAGTAA T-------AA hedgehog GAT---GATA TAAAAATTCT ---TAAATTT AAGACAAAAA T-------AT shrew GAT---GATA TCAAAA---- ---------- ---------- ---------- rfbat GATGAAGATA TCAAAATAAT ---TAAATTT AAAGCAATAA T-------GA cpbat GATAAAGATA TCGAGATTGC ---TAAATTT AAAACAATAA T-------GA cat GATGAAGATA TCAAAATTCC ---TAAATTT AAAGCAATAA T-------GA clouded_leopard GATGAAGATA TCAAAATTCC ---TAAATTT AAAGCAATAA T-------GA ferret GATGAAGATA TCAAAATTCC ---TAAATTT AAAGCAGTAA T-------GA dog GATGAAGATA TCAAAATTCC ---TAAATTT AAAGCAATAA T-------GA pig GATGAAGATA TCTCAACTCC ----CAATTT AAACCAATAA T-------GA muntjak_indian GATGAAGATA TCTAACTTCC ----AAATTT AAAGTAATAA T-------GA sheep GATGAAGATA TCTAAATTCC ----AAATTT AAAGCAATAA T-------GA cow GATGAAGATA TCCAAATTCC ----AAATTT AAAGCAATAA T-------GA horse GATGAAGATA TCAAAATTCC ---TAAATTT AAAGCAATAA T-------GA armadillo GATGAAGATA TCAAAA---- ---------- ---------- ---------A elephant GATGAAGATA TCAAAATTTC ---TAAATTT AAAGCAA--- ---------A tenrec ACAGAAGGCA GCGAAATTTC ---TAAACAT AAAAGAG--- ---------A wallaby GGTGATGATA TCAAAATTTC ------ATTT AAACCAATAC T-------CC monodelphis GATGATGATA TCAAAATTTC ------ACTT AAAGCACTAC C-------AA opossum GATGATTATA TCAAAATTTC ------ATTT AAAGCACTAC C-------AA platypus TGTGATGATA TCAAAACTTT GCTTTTCTTT AAAAGGGCAT T-------CG chicken CGGGGGAACT TTAAAATACA ---TTAACGT TCTGCAGTGA A-------A- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TAGAATTAGT chimp AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TAGAATTAGT gorilla AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAGT orangutan ---------- ---------- ---------- ---------- ---------- gibbon AATGTC---- ---------- -AA-ACT-AT TATTGCCAAT TTGAATTAGT colobus_monkey AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAGT vervet AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAGT baboon AATGTT---- ---------- -AA-ACTAAT TTTTGCCAAT TTGAATTAGT macaque AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAGT dusky_titi AATGTTA--- -GCAGAAATG AAA-ACTAAT TATTGCCAAT TTGAATTGAT owl_monkey AATGTTAAAC TGCAGAAATG AAA-ACTAAT TACTGCCAAT TTGAATTAAT squirrel_monkey AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAAT marmoset AATATTAAAC TGCAGAAATG AAA-ACTAAT TATTGCCAAT TTGAATTAAT galago ATTGTT---- ---------- -AA-CCTAAT CATTGCCAAC TGGGATTAAC mouse_lemur GCAGTT---- ---------- ----TTTAAT TATTGCCAAT TGGAATTAAC lemur GCAGTT---- ---------- ----TTT--- ---------- ---------- rabbit AATGGC---- ---------- -AA-AATAGT TATTGCCAAT TTGAATTGAT st_squirrel AATATT---- ---------- --A-ACTAAT TATTGTCAAT TTTAATTAAT guinea_pig AATGTT---- ---------- -AA-ACTAAT TATTTTCAGT TTGAATTAAT rat AGTGTT---- ---------- -TA-ACTGCA TGTTGGAAAT TTGAATTAAT mouse A-TGTT---- ---------- -CA-ACTGCA TATTGGAAAT GTGAATTAAT hedgehog AATGGT---- ---------- -AA-ACT--- ---------- ---------- shrew ---------- ---------- -------AAT AGTTGCCAAT TTGAAATAAT rfbat AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAAT cpbat AATGTT---- ---------- -AA-ACTGAC TACTGCCGAT TTGAATTAAT cat AATTTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAAT clouded_leopard AATTTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAAT ferret AAT-TT---- ---------- -AA-ATC-AT TATTGACAAT TTAAATTACT dog AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TTAAATTAAT pig AGTGTT---- ---------- -AA-ATCAAT TATGACCaat ttaaattaat muntjak_indian AATGCT---- ---------- -AA-ACTACT TATTG-CAAT TTGAATTAAT sheep AATGTT---- ---------- -AA-ACTAGT TATTGCCAAT TTGAATTAAT cow AATGTT---- ---------- -AA-ACTAAT TATTGCCAAT TTGAATTAAT horse AGTATT---- ---------- -AA-ACTACT TATTACCCAT TCAAATTAAT armadillo AATGTT---- ---------- -AA-GCTAAT TATTTCCAAT TTGAATTAAT elephant AATGTT---- ---------- -AA-GCT--- ---------- ---------- tenrec AATGTT---- ---------- -AA-ACTAAT GATTGCTAAC TTGAATTAAT wallaby TATGCT---- ---------- -AACA----- ---------- ---------- monodelphis AATGCT---- ---------- -AA-A----- ---------- ---------- opossum TATGCT---- ---------- -AA-A----- ---------- ---------- platypus TATGCT---- ---------- -AA-AAG--- ---------- ---------- chicken ---------- ----CACAGA GAA-AGC--- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human aataaata-t ttcctgga-- ----tTTC-A TCA-AAGTTT CCAC-AG--- chimp aataaata-t ttcctgga-- ----tTTC-A TCA-AAGTTT CCAC-AG--- gorilla ---------- ---------- ------TC-A TCA-AAGTTT CCAC-AG--- orangutan ---------- ---------- ---------- ---------- ---------- gibbon aataaata-t ttcctgga-- ----tTTC-A TCA-AAGTTT CCAC-AG--- colobus_monkey aatacata-t ttactgga-- ----tTTC-A TCA-AAGTTT CCACAAG--- vervet aataaata-t ttactgga-- ----tTTC-A TCA-AAGTTT CCACAAG--- baboon aataaata-t ttactgga-- ----tTTC-A TCA-AAGTTT CCACAAG--- macaque aataaata-t ttactgga-- ----tTTC-A TCA-AAGTTT CCACAAG--- dusky_titi AATAAATA-T TTACTGGA-- ----TTTC-A TCA-AAGTTT CCAC-AG--- owl_monkey aataaata-t ttactgga-- ----tTTC-A TCA-AAATTT CCAC-AG--- squirrel_monkey aataaata-t ttactgga-- ----tTTC-A TCA-AAGTTT CCAC-AG--- marmoset aataaata-t ttactgga-- ----tTTC-A TCA-AAGTTT CCAC-AG--- galago ---------- ---------- ------TC-A TCA-AAGTTT CCAGAAA--- mouse_lemur aataaata-c ttattgga-- ----ttTC-A TCA-GAATTT CCACAAG--- lemur aataaata-t ttactgga-- ----ttTC-A TCA-GAGTTT CCACAAG--- rabbit AATAAATA-A TTATT----- ----TCTC-A TCC-AAGTTT CCACAAG--- st_squirrel A-TAAATA-T TTACTGGA-- ----TTTC-A TCA-AAGTTT CCATAAC--- guinea_pig --TAACTA-T TTACTATA-- ----CTTC-A CCA-AAGTTT CCATAAG--- rat AATAAATA-T TTACTGAG-- ----TTTC-A TCA-AACTTT CCATAAG--- mouse AATAAATA-T TTACTGAA-- ----TTTC-A TCA-AACTTT CCATAAG--- hedgehog ---------- ---------- ------TC-A TCA-AAGTTT CCACAAG--- shrew -ATAAATA-T TTACTGAA-- -----T-C-A TCA-AAGTTT CCATAAG--- rfbat aataaata-t ttactgga-- ----ttTC-T TCA-AAGTTT CCACAAA--- cpbat aataaata-t ttactgga-- ----ttTC-A TCA-AATTTT CCACAAG--- cat aataaata-t ttactgga-- ----tcTC-A TCA-GAGTTT CCACAAG--- clouded_leopard aataaata-t ttactgga-- ----tcTC-A TCA-GAGTTT CCACAAG--- ferret AAGAAATT-T TTATTGTA-- ----CTTC-A TCA-AAGTTT CCACAAG--- dog aa---ata-t ttactgga-- ----ttTC-A TCA-AAGTTT CCACAAA--- pig aataagta-t ttactaga-- ----tgTC-A TCA-AAGTTT CCACAAG--- muntjak_indian AGTAACTA-T TTACCGGA-- ----TTTC-A TCA-AAGTTT TCACAAG--- sheep AATTAATA-T TTACCAGA-- ----TTTC-A TCA-AAGTTT TCACAAG--- cow AATAAATA-T TTACCGGA-- ----TTTC-A TCA-AAGTTT TCACAAG--- horse aataaata-t ttactgga-- ----tTTC-A TCA-AAGTTT CCTCAAG--- armadillo aataaata-t atactgaatT CATTTTTC-A T---CAGTTT CCACAAAGGG elephant ---------- ---------- ------TC-A TGAAAAGTTT CCACAAA--- tenrec aataaata-t ttac------ ---------- ----AAGTTT CCACAAA--- wallaby aatgagtaga gtgttagact ----tt---- ---------- ---------- monodelphis aatgaataaa atgctggac- ----tgTC-A TCA-TTGTTT CCATGAC--- opossum aatgaataac gtgttggac- ----tgTC-A TCA-TTGTTT CCATTAC--- platypus ---------- ---------- ------GCTA TCA-TTGTTT CCTCTAG--- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human --GGATGGAA ATAATAAACA AATTAGTATT ACTCATTTGC GATCTGTGCT chimp --GGATGGAA ATAATAAACA AATTAGTATT ACTCATTTGC GATCTGTGCT gorilla --GGATGGAA ATAATAAACA AATTAGTATT ACTCATTTGC GATCTGTGCT orangutan ---------- ---------- ---------- ---------- ---------- gibbon --GGATGGAA ATAACAAACA ACTTGGTATT ACTCATTTGC GATCTGTGCT colobus_monkey --GGATGGAA ATAATAAACA ACTTGGTATT ACTCATTTGT GATCTGTGCT vervet --GGATGGAA ATAATAAACA ACTTGGTATT ACTCATTTGC GATCTGTGCT baboon --GGATGGAA ATAATAAACA ACTTGGTATT ACTCACTTGC GATCTGTGCT macaque --GGATGGAA ATAATAAACA ACTTGGTATT ACTCATTTGC GATCTGTGCT dusky_titi --AGATGGAA ATAATAAACA ACTTGGTATT ACTCATTTTC GATCTGTGCT owl_monkey --GGATGGAA ATAATAAACA ACTTGGTATT ACTCATTTTC GATCTGTGCT squirrel_monkey --GGATGGAA ATAATAAACA ACTTGGTATT ACTCATTTT- -GTCTGTGCT marmoset --GGATGGAA ATAATAAACA ACTTGGTATT ACTCATTTTC TGTCTGTGCT galago --GGATGGAA GTAATAAACA ACTTGGTATT AGTCATTTGT GATCTGTTCT mouse_lemur --GGATGGAA ATAATAAACA ACTTGGTATT AGTCATTTGT GATCTGTGCT lemur --GAATGGAA ATAATAAACA ACTTGGTATT AGTCATTTGT GATCCATGCT rabbit --GGATGGAA ATAATAAACA ACTTGGTATT AGTCATTTGT GATCTGTGCT st_squirrel --AGATGGAA ATAATAAACA GCTTGGTAT- ------TAGT GATCCTTGCT guinea_pig --GGATGGAA ATAATAAACA ACTTGGTATT AGTCATTAGT AATTTGTGC- rat --TCATGGGA GCAGTAAACA ACTTGCTGTT ACTCACTAGT GATCTATGCC mouse --GCATGGAA GTAATAAACA ACTGGCTATT ACTCACTAGT GATCTATGCC hedgehog --GGATGGAA ATAATAAACA AGCTGGTATT ACTCATTGGT ATTCTGTGTT shrew --GGATGGAA GTAATAAACA AGTTGGTATT AGTCACTAGT GATATGTGCT rfbat --GGATGGAA ATAATAAACA AGTTGGTATT AGTCATTAGT GATCTGCACT cpbat --GGCTGGAA ATAATAAACA AGTTGGGATT AGTCATTAGT GATCCGTGTT cat --GGATGGAA ATAATAAACA AGTTGGCATT AGTCATTAGT GATCTGTGTT clouded_leopard --GGATGGAA ATAATAAACA AGTTGGCATT AGTCATTAGT GATCTGTGTT ferret --GAATGGAA ATAATAAACA AGTTGGCATT AGTCATTAGT GATCTGTGCT dog --GGATGGAA ATAATAAACA AGTTGGAATT AGTCATTAGT GATCTGTGCT pig --GAATGGAA ATAATAAACA AGTTCATATT AGCCACTAGT GATCTGTGCT muntjak_indian --GAATGGAA ATGAC----- --TTCATATT GGTCATTAGT GATCTGTGCT sheep --GAATGGAA ATGGT----- --TTCATATT GGTCATTAGT GATCTGTGCT cow --GAATGGAA ATGAT----- --TTCATATT GGTCATTAGT GATCTGTGCT horse --GGGTGGAA ATAATAAACA AGTTGGTGTT GGTCAATAGT GATCTGTGCT armadillo ATGGATGGAA ATAATAAACA ACTTTGTATT AGTCACTAGT GATCTGTACT elephant --GGATGGAA ATGATAAACA ACTTGGTATT AG-------- -------GCT tenrec --GGATGGAA ACCATTAACA ACTTGGCATT AGTCATTAGT GATCTGTGCT wallaby ---------- ---------- ---------- ---------- ---------- monodelphis --TGCTGGAA ATAATAAGCC ATGGGGCATT -GCTATTAGT GATTTGTGAC opossum --TGCTGGAA ATAATAAGCC ATGGGGCATT AGTTATTAGT GATTTGTGAC platypus -----TGGA- ---------- -----GTGTG AGGCGT---- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human C-ATAAACCG TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- chimp T-ATAAACCG TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- gorilla C-ATAAACGA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- orangutan ---------- ---------- ---------- ---------- ---------- gibbon C-ATAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- colobus_monkey C-GTAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- vervet C-GTAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- baboon C-GTAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- macaque T-GTAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- dusky_titi C-ATAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- owl_monkey C-ATAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- squirrel_monkey C-GTAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- marmoset C-ATAAACCA TTTGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTT-- galago T-ACAAACCA TATGTGAGAT TAAAG--TAA AAAGCCAATG AATA-TTT-- mouse_lemur C-ATAAACCA TATGTGAGAT TAAAG--TAA AAAGCAAAGG AAGA-TTTTG lemur C-AGAAATCA TATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-TTTTA rabbit C-ATAAACCA CATGTGAGAT TAAAG--TAA AAAGCAAATG AAGA-CTT-- st_squirrel C-ATAAACCA CATTTAAGAT TAAAG--TAA AAAGCAAATG AGGA-TTT-- guinea_pig ---TAAACCA CATGTGAGAT TAAAG--TAA AAAGAAAATG AGGG-TTT-- rat C-ATAAACCA CATCTAAGAT TAAAG--AAA AGAGCAAATG AGGA-CTT-- mouse C-ATAAACCA CATCTGAGAT TAAAG--AAA A-AGCAAATG AGGA-TTT-- hedgehog C-ATAAACCA CATGTGAATA TTAAAGTAAA AAAA-ATATG ATGG-TTT-- shrew C-AT-AACCA CATGTGAGAC TGAAGGGGGG AAAGCATATA AAGATTTT-- rfbat C-ATAAACCA CATGTGAGAT TAAAG---AA AAAGCAAATG AATA-TTT-- cpbat C-AAAAACCA CATGTGAGCT TAAAG----- -AAGCAAATA AATA-TTT-- cat C-ATAAACCA CATGTGAGAT TAAAG--TAA AAAGCAAATG AAAT-TTT-- clouded_leopard C-ATAAACCA CATGTGAGAT TAAAG--TAA AAAGCAAATG AAAT-TTT-- ferret C-ATAAGCCA CATGTGAGAT TAAAG--TAA AAAACAAATG AAAT-TTT-- dog C-ATAAACCA CATGTGAGAT TAAAG--TAA AAAACAAATA AAAT-TTT-- pig C-ATAAACCA CATATAAGAT T-AAG--TGA AAAGGAAATA AAGA-TTT-- muntjak_indian TAATAAACCA CATGTGAGAT TAAAG--TAA AAAGCAAAAG AAGA-TTT-- sheep TAATAAACCA CATGTGAGAT TAAAG--TAA AAAGCAAAAG AAGC-TTT-- cow TAATAAACCA CATGTGAGAT TAAAG--TAA AAAGCAAAAG AAGA-CTT-- horse C-ATAAACCA CATGGGAAAT GAAAG--TAA AAAGCAACTG AAGA-TTT-- armadillo C-ATAAGCCA CATGTGAGAT TAAAG--TAA AGGGCAGATG GAGA-GTT-- elephant C-ATAAAGCG CATGTGAGAT TAAAA--TAA AAAGCAGATG AAGA-TTT-- tenrec G-GGAAACCT CTTGTGAGAT CGAAA--TAA TCAGCAGATG AAGG---T-- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis C-ATATACCA CATGTGAGAT TAAAA--TAA ACAACAGATG AAAT-TTT-- opossum G-ATATACCA TATGTAAGAT TAAAA--TAA ACAACAGATG AAAA-TTT-- platypus ---TGGACCA TATGTGTGCT TAAAA--TAA ACATCAGATG GGCATTTT-- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ---TAAATAT GTTGGCCATA TGCAAAAATG TATTTCATTT TGCATTTCTA chimp ---TAAATAT GTTGGCCATA TGCAAAAATG TATTTCATTT TGCATTTCTA gorilla ---TAAATAT GTTGGCCATA TGCAAAAATG TATTTCAATT TGCATTTCTA orangutan ---------- ---------- ---------- ---------- ---------- gibbon ---TAAATAT GTTGACCATA TGCAAAAATG TATTTCAATT TGCATTTCTA colobus_monkey ---TAAATAT GTTGGCCATA TGCAAAAATG TATTTCATTT TGCATTTCTA vervet ---TAAATAT GTTGGCCATA TGCAAAATTG TATTTCAATT TGCATTTCTA baboon ---TAAATAT GTTGGCCATA TGCAAAAATG TATTTCAATT TGCATTTCTA macaque ---TAAATAT GTTGGCCATA TGCAAAAATG TATTTCAATT TGCATTTCTA dusky_titi ---TAAATAT GTTGGCCACA TGCAAAAATG TATTTCAATT TGCATTTCTA owl_monkey ---TAAATAT GTTGGCCATA TGCAAAAATG TATTTCAATT TGCATTTCTA squirrel_monkey ---TAAATAT GTTGGCCATA TGCAAAAATG TATTTCAAGG TGCATTTGTA marmoset ----AAATAT GTTGGCCATA TGCAAAAATG TATTTCAATT CGCCTTTCTA galago ---TAAATAT GTTGGCCACA TGCAAAA-TG TATTTTA--T TGCATTTCTA mouse_lemur TAATAAATAT GTTAGCCACA TGCAAAA-TG TATTTCAATT TGCATTTCTA lemur TAATAAATAT GTTAGCCATA TGCAAAA-TG TATTTCCATT TGCATTTCTA rabbit ---AAAATAT GTTGGCCATG TGCAAAA-CA GATCTTAATT TGCATTTCTC st_squirrel ---TAAATAT GTTGGCCACA TGCAAAA-TG CATTTGAATT TGCATTTCTA guinea_pig ---TAAATAT GTTGGCCATA TGTAAAA-TG TATTTAAACT TGCGTTTCT- rat ---CAAATAT GTTGGCCACA TGCAAAC-TA TACTTTAATT CGCATTTCTA mouse ---CAAATAT GTTGGCCACA TGCAAAC-TA TATTTTAATT TGCATGTCTA hedgehog ---TAAATGT GGCTCCCATA TGCAAAA-TT TATTTCAATT TGCATTTTTA shrew ---TAAATAT GTTAGCCATA TGCAAAA-TG TAATGCAATT TACATCTCCA rfbat ---TAAATGT GTTGGCCATA TGCAAAA-TG TATGTCAATT TGCATTTATA cpbat ---TAAATAT GTTGGCTGTA TGCAAAA-TG TAATTAAAAT TGCATTTATA cat ---TAAATAT GTTGGCCATA TGCAAAA-CG TACTTCAATT TGTATTTCTA clouded_leopard ---TAAATAT GTTGGCCATA TGCAAAA-CG TACTTCAATT TGCATTTCTA ferret ---TAAATAT GTTGACCATA TGCAAAA-CG TACGTCAATT TGTATTTCT- dog ---CAAATAT GTTGACCATA TGCAAAA-TG TATTTCAATT TACATTTCTA pig ---TAAATAT GTTGGCCATA TGCAAAA-TG TACTTCAATT TGCATTTCTA muntjak_indian ---TAAATAT GTCAGCCATA TGCAAAA-TG TTTTTCAATT TGCATTTCTA sheep ---TAAATAT GTCAGCCATA TGCAAAA-TG TTTTTCAATT TGCATTTCTA cow ---TAAATAT GTCAGCCATA TGCAAAA-TG TTTTTCAATT TGCATTTCTA horse ---TAAATAT GTTGGCCACA TGCAAAA-TA TATTTCAATT TGCATTTCTA armadillo ---TAAGTAT GTCAGCCATA TGTAAAA-TA TATTTCAATT TGCATTTCTA elephant ---TAAATAT GTTGACCATA TGAAG---TG TATTTCAGTT CGCATTTCTA tenrec ---CAAATAT GGGGGCCTGG TGCAGGA-TG TATTCTAATT TGCATTTCAA wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---TAA-TAT GCTTACCACA TGCAAAA-TT TATTTTAATT TGGGTTTTTG opossum ---TAA-TAT GTTTACCATA TGCAAAA-TT TATTTTAATT TGGGTTTCTA platypus ---TAAATAT GTTTGCCTCA TGGAGCA-TT TCTTTAA--- ---------- chicken ---------- ---------- ---------- -------CTT TAAAAATATC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATAATGACA- TATTATTTTA TATATG---G TTTGTAACAG AGATCTATGT chimp ATAATGACA- TATTATTTTA TATATG---G TTTGTAACAG AGATCTATGT gorilla ATAATGACA- TATTATTTTA TATATG---G TTTGTAACAG AGATCTATGT orangutan ---------- -ATTATTTTA TATATG---G TTCGTAACAG AGATCTATGT gibbon ATAATGACA- TATTATTTTA TATATG---G TTTGTAACAG AGATCTATGT colobus_monkey ATAATGACA- TATTATTTTA TATATA---G TTTGTAGCAG AGATCTATAT vervet ATAATGACA- TATTATTTTA TGTATA---G TTTGTAACAG AGATCTATAT baboon ATAATGACA- TATTATTTTA TATATA---G TTTGTAACAG AGATCTATAT macaque ATAATGACA- TATTATTTTA TATATA---G TTTGTAACAG AGATCTATAT dusky_titi ATAATGGCA- T--------- ---------- -----AACAG AGATCTCTAT owl_monkey ATAATGACA- T--------- ---------- -----AACAG AGATCTATAT squirrel_monkey ATAATGACA- T--------- ---------- -----AACAG AGATCTATAT marmoset ATAATGACA- T--------- ---------- -----AACAG AGATCTATAT galago ATCACGGCA- T--------- ---------- -----AACAC AGACCTATAT mouse_lemur TTAATGGCA- C--------- ---------- -----AACAC AGACTTATAT lemur ATAATGGCA- T--------- ---------- -----AACAC AGACTTATAT rabbit ATAATGATA- TATTATTTTA TATATA---G TTTATAACAG AGACCTATAT st_squirrel ATAGTGACA- T--------- ---------- -----AGTAG AAACCTATAT guinea_pig ATAATGACA- TATTATTT-- TATACA---G TTTATAACAG AAATCTATAT rat ATAATGATA- T--------- ---------- -----AACAG AAGCCTGCCT mouse ATAATGATA- T--------- ---------- -----AACAG AAGCCTGTAT hedgehog ATAAAGGCA- T--------- ---------- -----AACAG AGACCTATAT shrew TTAATGTCA- C--------- ---------- -----AACAG AGACCTATAT rfbat ATAATGACA- TAT------- -----A---G TTTATAACAG AGACCTATAT cpbat ATAATGATA- T--------- ---------- ---------- ---------- cat ACAATGACA- T--------- ---------- -----AACAG AAACCTATAT clouded_leopard ACAATGACA- T--------- ---------- -----AACAG AAACCTATAT ferret ---------- ---------- ---------- -----AACAG AAACCTATAT dog ATAATAACA- T--------- ---------- -----AACAG AAACCTATAT pig ATAATAACA- T--------- ---------- -----AACAG AGACCTATAT muntjak_indian ATAATGACA- T--------- ---------- ---------- ---------- sheep ATAATGACA- T--------- ---------- -----AACAG AGACCTATAT cow ATAATGACA- T--------- ---------- -----AACAG AGACCTATAT horse ACAATGACA- T--------- ---------- -----AACAG AGACCTATAT armadillo ATAATGACA- TATTATTTCA TATATA---G TTTATAACAG AGAACTATAT elephant GGAACG---- -ATTATTTTA TCTATATAGA TTTATAACAG AGTCCTATAT tenrec ATCACG---- ---------- ---------- -----AACAG AGACCTATAT wallaby ---------- ---------- ---------- -----AACAC AGAC--ATAT monodelphis ATGATGTCAT T--------- ---------- ---------- ---------- opossum ATGATGTCAC T--------- ---------- -----AGCAT AGAC--ATAT platypus ---------- ---------- ---------- ---------- ---------- chicken AGAATAATC- T--------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ----ATGGAC ATTATTAAGA GTT---AAAA ACTGACCATA TTTGGCTTAA chimp ----ATGGAC ATTATTAAGA GTT---AAAA ACTGACCATA TTTGGCTTAA gorilla ----ATGGAC ATTATTAAGA ATT---AAAA ACTGACCATA TTTGGCTTAA orangutan ----ATGGAC ATTATTAAGA GTT---AAAA ATTGACCATA TTTGGCTTAA gibbon ----ATGGAC ATTATTTAGA GTT---AAAA ACTGACCATA TTTGGCTTAA colobus_monkey ATGGATGGAC GTTATTAAGA GTT---AAAA ACTGACCATA TTTGGCTTGA vervet ATGGATGGAC GTTATTAAGA GTT---AAAA ACTGACCATA TTTGGCTTGA baboon ATGGATGGAC GTTATTAAGA GTT---AAAA ACTGACCATA TTTGGCTTGA macaque ATGGATGGAC GTTATTAAGA GTT---AAAA ACTGACCATA TTTGGCTTGA dusky_titi ATGGATGGAC ATTTTTAAGA GTT---AAAA ACTGACCATA TTTGGCTTG- owl_monkey ATGGATGGAC ATTATTAAGA GTT---AAAA ACTGACCATA TTTGGCTTG- squirrel_monkey ATGGATGGAC ATTATTAAGA GTT---AAAA ACTTACCATA TTTGGCTTG- marmoset ATGGATGGAC ATTATTAAAA GTT---AAAA ACTGACCATA TTTGGCTTG- galago ATGGATGGAC ---ATTCAGA CTT---AAGA ACTGACCATA TTTGGCTTGA mouse_lemur ATGGATGGAC ---ATTCAGA CTT---GAAA ACTGACCATA TTTGGCTTGA lemur ATGGATGGAC ---ATTCAGA CTT---GAAA ACTGACCATA TTTGGCTTGA rabbit ATGGATGGAC ATTGTTAAGA GTT---TAAA AGTGACCATA TTTGGCTTGA st_squirrel ATGGATGGAT ATTGTTAAGA GTT---AAAA ACTGACCATA TTTGGCTTGA guinea_pig ATGGATGGAC ATTGT--TGA GTT---GAAA TCTGACCATA TTTGGCTTGA rat GTGGATGGAC ATTGT-AAGA GTT---AAAA GCTGACCATA TTTGGCTCGA mouse ATGGGTGGAC ATTGT-AAGA GTT---AAAA GCTGACCATA TTTGGCTTGA hedgehog ATGGGTAACC ATT-TCAAAC ATTTTTCAAA A--GGCCATA TTTGGTTTTA shrew ATGGATGAAT GTTGTCGGAC ATTTTAAAAA TATGGCCATA TTTGGCTAGA rfbat ATGGATGGAC ATTGTCAAGA GTT----AAA ACTGACCATA TTTGGTTTGA cpbat ---------- ---------- ---------- ---------- ---------- cat ATGGATGGAC ATTGTCAAGA GTT---AAAA ATTGACCATA TTTGGCTTCA clouded_leopard ATGGATGGAC ATTGTCAAGA GTT---AAAA ATTGACCATA TTTGGCTTCA ferret ATGGATGGAC ATTGTCAAGA GTA---AAAA ATTGACCATA TTTGGCTTGA dog ATGGATGGAC ATTGTCAAGA GTT---AAAA GTTGACCATA TTTGGCTTGA pig ATGGATGGAC ATTGTCAGGA GTT---TAAA ACTGACCATA TTTGGCTTGA muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ATGGATGGAC GTTGTCAGGA GTT---TAAA ACTGACCATA TTTGGTTTGA cow ATAGATGGAC GTTGTCAGGA GTT---TAAA ACTGACCATA TTTGGTTTGA horse ATGGATGGAC TTTGTCAAGA GTT---AAAA ACTGACCGTA TTTGGCTTGA armadillo ATGGATGAAC ATTGTTAAAA GTT---AGAA ACTGACCATA TTTGGCTTGA elephant ATGGAGGGAC ATTATTAAGA GTT---AAAA ATTGACCATA TTTGGCTTGC tenrec ATGGACGGAT GTGATTAAGA GTT---AAAA ACTAACCATA TTTGGCTTGA wallaby ATGGCTGGAC ATGGGTG--C CTG---AAAA ATTGACCATA TTTGGCC-AA monodelphis ---------- ---------- ---------- ---------- ---------- opossum ATGGCAGGAC ATGGGTG--- CTG---AAGA TTTGACCATA TTTGGTT-GA platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AAATATGAAA ATtttgtaaa tttctaggtt gacatataaa attccagaat chimp AAATATGAAA ATttcgtaaa tttctaggtt gacatataaa attccagaat gorilla AAATATGAAA ATtttgtaaa tttctaggtt gacatataaa attccagaat orangutan AAATATGAAA ATtttgtaaa tttctaggtt gacatataaa attccagaat gibbon AAATATGAAA ATtttgtaaa tttctaggtt gacatataaa attccagaat colobus_monkey AAATATGAAA ATtttgtaaa tttctatgtt gacatataaa attccagaat vervet AAATATGAAA ATtttgtaaa tttctaggtt gacatatcaa attccagaat baboon AAATATGAAA ATtttgtaaa tttctaggtt gacatataaa attccagaat macaque AAATATGAAA ATtttgtaaa tttctaggtt gacatataaa attccagaat dusky_titi AAATATGAAA ATtttgtaga tttctagact gacatataaa attccagaat owl_monkey AAATATGAAA ATtttgtaaa tttctagact gacatataaa atttcagaat squirrel_monkey AAATATGAAA ATtttgtaaa tttctagact gacatgtaaa attccagaat marmoset AAATATGAAA ATtttgtaaa tttctagact gacatataaa atttccgaat galago AATGATGAGA ATttcataaa tttctacatt atcataaaaa attccagaat mouse_lemur AAAGCTGCAA ATtttgtaaa tttctaggtt gacatataaa attccagcat lemur AAAGCTGAAA ATtttgtaaa tttctaggtt gacatataaa attccagaat rabbit AGGGAGGAAA ATtttgcaaa tttctaggtt ctcatataaa a--------- st_squirrel AAAGACGAAA AT-------- ---------- ---------- ---------- guinea_pig AAAAATGAAA ATttagtaaa tttcttaatt gacctataaa attctagaat rat AACGACGAAA ATttcgtaaa tgtctaagtt gac--agaaa attccagaat mouse AAAGACGAAA ATTTTGTAAA TGTCTAAGTT GAC--AGAAA ATTCCAGAAT hedgehog AAACACAAAA ATtttgtaat gctctaggtt gacatataaa tctccataat shrew AACGATGAAA CCTTTGTAAG CACCTAAGTT TATATACAA- -TGTGAGAAT rfbat AAAGATGAAA AT-ttgtaaa ttttgaggct gacatataaa attccagaat cpbat ---------- ---------- ---------- ---------- ---------- cat AAAGATGAAA ATtttgtaaa tttctaggtt gatatataaa attccagaat clouded_leopard AAAGATGAAA ATtttgtaaa tttctaggtt gatatataaa attccagaat ferret AAAGA-GAAA ATtttgtaca tttccaggtt gatatataaa attccagaat dog AAAGATGAAA ATtttgtaaa tttctaggtt gatatataaa attccagaat pig AAATATGAAA ATtttgtaaa tttctaggtt gacacataaa attccagaat muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep AAAGATGAAA ATtttgtaag tttctcagat gacacataaa attctagaat cow AAAGATGAAA ATtttgtaag tttctcagat gacacataaa attctagaat horse AAAGATGAAA ATtttgtaaa tgtctatatt gacatataaa atttcagaat armadillo AAAGATGAAA ATTTTGTAAA CTTCTTTTTT ---------- ---------- elephant AAAGATGAAA AT-------- ---------- ---------- ---------- tenrec AAACATGAAA AT-------- ---------- ---------- ---------- wallaby CTAGATGAAA AT-------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum GTAGATAGAT AT-------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human a-ttataaat actatttcct tctgga---- -gtattgttt taattattag chimp a-ttataaat actatttcct tctgga---- -gtattgttt taattattag gorilla a-ttataaat actatttcct tctgga---- -gtattgttt taattattag orangutan a-ttataaat actatttcct tctgga---- -gtattgttt taattattag gibbon a-ttataaat gctatttcct tctgga---- -gtattgttt taattattag colobus_monkey a-ttataaat actatttcct tctgga---- -gtattgttt taattattag vervet a-ttataaat actatttcct tctgga---- -gtattgttt taattattag baboon a-ttataaat actatttcct tctgga---- -gtattgttt taattattag macaque a-ttataaat actatttcct tctgga---- -gtattgttt taattattag dusky_titi a-ttataaat actatttcct tatgga---- -gtactgttt taattattag owl_monkey a-ttataaat actatttcct tctgga---- -gtattgttt taattattag squirrel_monkey a-ttataaat actatttcct tctggg---- -gtattgttt tacttattag marmoset a-ttataaat actatttcct tctgga---- -gtattgttt ta---attag galago g-ttattaat acta------ ---------- ---------- ---------- mouse_lemur a-ttataaat acta------ ---------- ---------- ---------- lemur a-ttataaat acta------ ---------- ---------- ---------- rabbit ---------- ----tttcct cctggactga ggtgttgtta taattattag st_squirrel ---------- ----ttttct tctgaggtga ggtattattg caa-tattag guinea_pig a-tgatatac actatttctt cctggattga gGTGCT---- ------TTTA rat agttataaat acta------ ---------- ---------- ---------- mouse AATTATAAAT ACTA------ ---------- ---------- ---------- hedgehog a-tcatagat accctctcct tctggagtg- ---------- -agttTTTAA shrew A-ATATAAAT ACTA------ ---------- ---------- ---------- rfbat t-ttatgaat attattttct tctagagtga agtattgtta caattattag cpbat ---------- ---------- ---------- ---------- ---------- cat a-ttataaat acta------ ---------- ---------- ---------- clouded_leopard a-ttataaat acta------ ---------- ---------- ---------- ferret a-ttataaat atta------ ---------- ---------- ---------- dog a-tta-aaat acta------ ---------- ---------- ---------- pig a-ctgtaaat acaatttccc tattcagtga ggcattgtta taactattag muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep a-ttataaat actatttcct tctggagtga ggtattgtta taaccatcag cow a-ttataaat actatttcct tctggagtga ggtattgtta taaccatcag horse a-ttataaat actatttcct tctggagtaa ggtattgtta caattattag armadillo ---------- ----TTTTCT TCTGGAGTGA GGTATTGTTA CAGTC-CTGG elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human tagttcacaa taata---aa taatagtaat tactattaaa aa-CAGTAGT chimp tagttcacaa taata---aa taatagtaat tactattaaa aa-CAGTAGT gorilla tagttcacaa taata---aa taatagtaat tactattaaa aa-CAGTAGT orangutan tagttcacaa taata---aa taatagtaat tactattaaa aa-CAGTAGT gibbon tagttcacaa tAATA---AA TAATAGTAAT CACTATTAAA AA-CAGTAGt colobus_monkey tagtacacaa tAATA---AA TAATAGTAAT TACTATTAAA AC-CAGTAAT vervet tagtacacaa taata---aa taatagtaat tactattaaa aaGCAGTAAT baboon tagtacacaa taata---aa taatagtaat tactattaaa aaACAGTAAT macaque tagtacacaa taata---aa taatagtaat tactattaaa aaACAGTAAT dusky_titi tagtatataa taata---aa taatagtaat tactattaaa aa-C--TAGT owl_monkey tagtatataa taata---aa taatagtaat tactattaca aa----GAGT squirrel_monkey tagtatataa tAATA---CA TAATAGTAAT TACAATTACA AA-CAGTAGT marmoset tagtat-taa taata---aa taatAGCAAT TACTATTACA AA-CAGTAGT galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit tagtccataa tAAAA---AA TAATAGTATT TACTATTCAA AA-TATTAAT st_squirrel gagtgtataa tgata---aa taatagagat TACTATTAAG AG-CATTCAT guinea_pig GAATGCAAAA CCATA---AA TAA------- TACTATCAAA AG-TATTATT rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog CAGTGCATAA TAATA---TA TATTAATAGT TACTATTAAA AG-CATTGAG shrew ---------- ---------- ---------- ---------- ---------- rfbat tactgtataa taata----- -gctaataat ttatatttaa ag-tatcagt cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig tagtacttaa taataataaa caatgataat tactattaga ag-ttttagt muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep tagtgtaaaa taata----- -----ataat tactattaaa aa-tattagt cow tagtataaaa tAATA----- -----ATaat tactattaaa ag-tattagt horse cagtacataa taata----- -----ataa- ---taataaa ag-tattagt armadillo TATTATATTA TAATA----- --------AT Aatgattaaa at-tattagc elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATACATTTTA TTTATCAATT AAAAACAAAT TTTAAACTGT AATAAtagta chimp A--------- ---------- ---------- ---------- -------gta gorilla A--------- ---------- ---------- ---------- -------gta orangutan A--------- ---------- ---------- ---------- -------gta gibbon a--------- ---------- ---------- ---------- -------gta colobus_monkey A--------- ---------- ---------- ---------- -------gta vervet A--------- ---------- ---------- ---------- -------gta baboon A--------- ---------- ---------- ---------- -------gta macaque A--------- ---------- ---------- ---------- -------gta dusky_titi A--------- ---------- ---------- ---------- -------gta owl_monkey A--------- ---------- ---------- ---------- -------gta squirrel_monkey A--------- ---------- ---------- ---------- -------gta marmoset A--------- ---------- ---------- ---------- -------gta galago ---------- ---------- ---------- ---------- ---------- mouse_lemur ---------- ---------- ---------- ---------- ---------- lemur ---------- ---------- ---------- ---------- ---------- rabbit G--------- ---------- ---------- ---------- -------GTA st_squirrel A--------- ---------- ---------- ---------- -------gta guinea_pig A--------- ---------- ---------- ---------- -------GTA rat ---------- ---------- ---------- ---------- ---------- mouse ---------- ---------- ---------- ---------- ---------- hedgehog A--------- ---------- ---------- ---------- ---------- shrew ---------- ---------- ---------- ---------- -------GTA rfbat a--------- ---------- ---------- ---------- ---------- cpbat ---------- ---------- ---------- ---------- ---------- cat ---------- ---------- ---------- ---------- ---------- clouded_leopard ---------- ---------- ---------- ---------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog ---------- ---------- ---------- ---------- ---------- pig g--------- ---------- ---------- ---------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep a--------- ---------- ---------- ---------- ---------- cow a--------- ---------- ---------- ---------- ---------- horse a--------- ---------- ---------- ---------- ---------- armadillo a--------- ---------- ---------- ---------- -------gta elephant ---------- ---------- ---------- ---------- ---------- tenrec ---------- ---------- ---------- ---------- ---------- wallaby ---------- ---------- ---------- ---------- ---------- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ACATTTTAGC AAGGTTGATT GTTTTAATAT AATAACTCTA -----TTTTT chimp ACATTTTAGC AAGGTTGATT GTTTTAATAT AATAACTCTA -----TTTTT gorilla ACATTTTAGC AAGGTTGATT GTTTTAATAT AATAACTCTA -----TTTTT orangutan ACATTTTAGC AAGGTTGATT GTTTTAATAT AATAACTCTA -----TTTTT gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ACATTTTAGC AAGGTTGATT GTTTTAATAT AATAACTCTA -----TTTTT vervet ACATTTTAGC AAGGTTGATT GTGTTAATAT AATAACTCTA -----TTTTT baboon ACATTTTAGC AAGGTTGATT GTTTTAATAT AATAACTCTA -----TTTTT macaque ACATTTTAGC AAGGTTGATT GTTTTAATAT AATAACTCTA -----TTTTT dusky_titi ATATTTTAGC AAGGTTGATT GTTTTAATAT AATAACTCTA -----TTTTT owl_monkey ATATTTTAGC AAGTTTGATT GTTTCAATAT AATAACTCTA -----TTTTT squirrel_monkey ATATTTTAGC AAGTTTGATT GTTTCAATAT AATAACTCTA -----TTTTT marmoset ATACTTTAGC AAGTTCGATT GTTTCAATAT AATAACTCTA -----TTTTT galago ACATTTTAGC ATGGTTGATT ATTTTAAAAT AATAACTCTA -----TTTTT mouse_lemur ACATTGTATC CAGGTTGATT ATTTTAAAAT AATAACTCTA -----TTTTT lemur ACATTGTATC AAGGTTGATG ATTTTAAAAT AATAACTCTA -----TTTTT rabbit ACATTTTAGC AAGGATGACT ATGCTAAAAT AATAGCTCTA -----TTTTT st_squirrel TCATTTTGGC AAGATTGATG GTTTTAAAAT AATAACTCTA -----TTTTT guinea_pig ACATTTTAGT AAAGTTAATT ATTTTAAAAT ACTAACTCGA -----TTTTT rat ACATTTGAGT AAAGTTGATT ATTTTAAAAT AATAACTCTA ------TTTT mouse ACATTTGAGT AAAGTTGATT ATTTTAAAAT AATAACTCTA ------TTTT hedgehog ACATTTTAGC TAGGTTGATT ATTTTATAAT AATAACTCCT -----TTTTT shrew ATATTTTAGC TAGATTGATT ATTTTAAAAT AATAACTC-T -----ATTTT rfbat ACATGTTAAC TAGGCTGATT ATTGTAAAAT AATAACTCTA -----TTTTT cpbat ACATTTTAGC TAGGCTGATT ATTTTAAAAT AATAACTATT -----ATTTT cat -------AGC TAAGTTGATT ATGTTAAAAT AATAACTCTA -----TTTTT clouded_leopard -------AGC TAAGTTGGTT ATGTTAAAAT AATAACTCTA -----TTTTT ferret -------AGC TAGATTGATT TTGTTAAAAT AATAACTCCA -----TTTTT dog ACATTTTAGC TAGGTTGATT ATGTTAAAAT AATAACTCTA -----TTTTT pig ACATTTTGGC TAGGCTGATT ATTTTAAAAT AATAACTCTA -----TTTTT muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep -------GAC TAGGTTAATT ATTTTAAAAT AATAACTCTA -----GTTTT cow -------GAC TAGGTTAATT ATTTTAAAAT AATAACTCAA -----GTTTT horse ACATTTTAGC TAGGTTGATT ATTTTAAAAT AATAACTCTA -----TTTTT armadillo ACATTTTAGC TAGGTTGATT ATTTTAAAAT AATAACTCTA -----TTTTT elephant ATATTTTAGC TAGGTTGATT ATTTTAAAAT AATAACTCTA -----TTTTT tenrec ACACTTTTGT TACATGGATT ATTTTCAAAT AATAACTCCA CTTTTTTTTT wallaby ---------- ---------- -----AAAAT AACCATTCTA -----TTTTG monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus ---------- ---------- -----AGAAT AATCATTCTA -----TTTTG chicken ---------- ---------- -----GAGAC G-TAACCCAA -GTGTATCTT fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human -GCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC chimp --CCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC gorilla -GCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC orangutan -GCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey -GCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC vervet -GCCCCAAA- CATTTA-GCT ATTTGTACTC TACTCCCTCA G--AAAATAC baboon -GCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC macaque -GCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC dusky_titi TGCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAT owl_monkey TGCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCCTCA G--AAAATAG squirrel_monkey TGCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAG marmoset TGCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAG galago TGTTCTAGA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC mouse_lemur TGCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC lemur TGCCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAT rabbit TGCCCCAAA- CATTTA-GCT ATTTGTGTTC TACTCCTTCA G--AAAATAC st_squirrel TGTCCAAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC guinea_pig TGCCCCAAA- CGTTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAT rat TGTCCCAAA- CATTTA-GCT AATTGTGCTC TACTCCTTCA G--AAACTAT mouse TGTCCCAAA- CATTTA-GCT AATTGTACTC CACTCCTTCA G--AAAATAC hedgehog TGATCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAACAC shrew TGGCCCAAA- CATTTA-GCT ATTTGTGTTC TACTCCTTCA G--AAAATAC rfbat TTGCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTCCA G--AAAATAC cpbat TAGCCAAAA- CATTTA-GCT ATGTGTGCTC TAGTGCTTCA G--AAAA--C cat TAGTCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC clouded_leopard TGGTCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC ferret TGGCCCAAA- CATTTA-GCT ATTTGTGTTC TACTCCTTCA G--AAAATAC dog TGGCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC pig TGGCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TGGCTCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC cow TGGCTCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC horse TGGCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC armadillo TGGCCCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC elephant TGGCTCAAA- CATTTA-GCT ATTTGTGCTC TACTCCTTCA G--AAAATAC tenrec TGGCTCAAAA CATTTA-GCT ATTTGTGCTC CACTCCTTCA G--AAAATAC wallaby -AGCTGAAA- TGTTTG-GCA ATTCGTGCTC TACTCCTTCA G--AAAATAC monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus -GGACCAAA- CATTTG-GCT ATTTGTGATC TCCTCCTTCA G--AAAATAC chicken CAACAGGAG- CAACTACACT AATTGGACTC GAAGCATTTA GCAAAAATGC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA chimp T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA gorilla T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA orangutan T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA vervet T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA baboon T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA macaque T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAATCAA dusky_titi T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA owl_monkey T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA squirrel_monkey T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA marmoset T--TTGCTTT CATAGTAAA- ---------- ----A-GACT TCAGAACCAA galago T--TTGCTTT CATAGTAAA- ---------- ----A-GTCT TCAGAACCGA mouse_lemur T--TTGCTCT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA lemur T--TTGCTCT CATAGTAAA- ---------- ----A-GTCT TCAGAACCAA rabbit T--TTG-TTT CATAATAAA- ---------- ----A-GTCT TTAGAACCAA st_squirrel T--TTGCTTT CATAATAAA- ---------- ----A-GTCT TCAGAACTAA guinea_pig T--TTGCTTT CATAGAAAA- ---------- ----A-CTCC TCAGAACCAA rat T--TTGCTTT CATAATAAA- ---------- ----A-GCCT TCAGAACTAA mouse T--TTGCTTT CATAATAAA- ---------- ----AAGCCT TCAGAACGAA hedgehog T--TTGGTTT CATAGTAAG- ---------- ----A-GTCT TCAGAAACAA shrew T--TTGCTTT CATAGT--G- ---------- ----A-GTCT TCAAAACCAA rfbat T--TTGCTTT CATAGTAAG- ---------- -------TCT TCAGA-CTAA cpbat T--TTGTTTT CAAAGTAAG- ---------- ----A-GTCT TCAGAACCAA cat T--TTGCTTT CATAGTAAG- ---------- ----A-GTCT TCAGAACCAA clouded_leopard T--TTGCTTT CATAGTAAG- ---------- ----A-GTCT TCAGAACCAA ferret T--TTGCTTT CATAGTAAG- ---------- ----A-GTCT CCAGAACCAA dog T--TTGCTTT CATAGTAAG- ---------- ----A-GTCT TCAGAACCAA pig T--TTGCTTT CATAGTAAG- ---------- ----A-GTCT TCAGAACCAA muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep T--TTGCTTT CATAGTAAG- ---------- ----A-GTCT TTAGAACCAA cow T--TTGCTTT CATAGTAAG- ---------- ----A-GTCT TTAGAACCAA horse T--TTGCTTT CATAGTAAG- ---------- ----A-GTCT TCAGAACCAA armadillo T--TTACTTT CATAGTACA- ---------- ----A-GTCT TCAGAACCAA elephant T--TTGCGTT CATAGCAAG- ---------- ----A-GTCT TCAGAAGTGA tenrec T--TTGCGTT CATAGTAAG- ---------- ----A-GTCT TCAGAACCAT wallaby T--TTGCTTA CAAAGTAAG- ---------- ----A-GTCT TCAAAACGAA monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus T--TTGTGTA CAAAGTAAG- ---------- ----A-CTCT TCGCATCTAA chicken TAATTGCTCA CACGGTCAAC AAAAGTTACC CAAAA-GTTT CCAAAGTAGA fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC chimp GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC gorilla GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC orangutan GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey GTAATTTGA- -GTAG-TATG CCCTTTATAG CAACATTCTG CAAATTCTAC vervet GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC baboon GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC macaque GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC dusky_titi GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC owl_monkey GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC squirrel_monkey GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC marmoset GTAATTTGA- -GTAG-CATG CCCTTTATAG CAACATTCTG CAAATTCTAC galago GTAATTTGA- -GTAG-CATG CCCTTTACAA CAACATTCTG CAAATTCTAC mouse_lemur GTAATTTGA- -GTAC-CATG CCCTTTACAG CAACATTCTG CAAATTCTAC lemur GTAATTTGA- -GTAC-CATG CCCTTTACAG CAACATTCTG CAAATTCTAC rabbit GTAATTTGA- -GTAG-CATG CCCTTTACAG CTACATTCTG CAAATTCTAC st_squirrel GTAATTTGA- -GCAG-CCTG CCCTTTACAG CTACATTCTG CAAATTCTAC guinea_pig GTAATTTGA- -GTTG-TGTG CCCTTTACAG CAGCATTCTG AAAATTCTAC rat GTCACTTAC- -GTAG-CGTG CCCTTTACAG CAACATTCTG CAGATTCTGC mouse GTGTCTTAC- -GTAG-CATG CCCTTTCCAG CAACATTCTG CAGATTCTAC hedgehog GTAATTTGA- -GTAG-CATG CCCTTTATAA CAACATTCTG CAAATTCTAC shrew GAAATTTGA- -GTAG-CGTG CCCTTTACAG CAGCATTCTG CAAATTCAAC rfbat GTAATTTGA- -GTAG-CGTG CCCTTTACAG CAACATTGTA TAAATTCAAC cpbat GTAATTGAGT TGTAG-CAAT GCTTTTACAG CAACATTCTG CAAATTCTCC cat GTAATTTGA- -GTAA-CATG CCCTTTACAG CAACATTCTG CAAATTCTAC clouded_leopard GTAATTTGA- -GTAA-CATG CCCTTTACAG CAACATTCTG CAAATTCTAC ferret GTAATTTGA- -GTAA-CATG CCCTTTACAG CAACATTCTG GAAATTCTAC dog GTAATTTGA- -GTAA-CATG CCCTTTACAG CAACATTCTG CAAATTCTAC pig GAAATGTGA- -GTAG-CATG CCCTTTACAG CAACATTCTG CAAATTCTAC muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep GTAATTTGA- -GTAG-CATG CCCTTTACAG CAACATTCTG CAAATTCTAC cow GTAATTTGA- -GTAG-CATG CCCTTTACAG CGACATTCTG CAAATTCTAC horse GTAATTTGA- -GTAG-CATG CCCTTTACAG CAACATTCTG CGAATTCTAC armadillo GTAATTTGA- -GTAC-TGTG CCCTTTACAG CAACATTCTG CAAATTCTAC elephant GTAATTTGA- -GTAG-CATG CCCTTTAAAG CAACATTCTG CAAATTCTAC tenrec GTAATTTGA- -GTAG-CATG CCCTTTGCAG AAACATTCTG CAAATTCTAC wallaby GTCAATTGA- -GTGG-TGTG GCCTTTACAG CAACATTCTA CAAATTCCCT monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus GACATTCGA- -GTGGCCATG CCCTTTAAAG CAGCATTCTG CAAAATCTTT chicken ACTTGTTAA- -ATTG-CGCG ACCTTTAAAA AAGTATTCTG AAAATTCTAC fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAA- chimp TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCAAAA- gorilla TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAA- orangutan TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAA- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAA- vervet TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAA- baboon TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAA- macaque TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAA- dusky_titi TATTTCCAAA TAAAGTAGTG -TGCAG-AT- ---TTT--CA GGACCACAG- owl_monkey TATTTCCAAA TAAAGTAGTG -TGCAG-AT- ---TTT--CA GGACCACAG- squirrel_monkey TATTTCCAAA TAAAGTAGTG -TGCAG-AT- ---TTT--CA GGACCACAG- marmoset TATTTCCAAA TAAAGTAGTG -TGCAG-AT- ---TTT--CA GGACCACAG- galago TATTTCCAAA TAAAGTAGTG -TGCAGTTT- ---TTT--CA GGACCACAG- mouse_lemur TATTTCCAAA TAAAGTAGTG -TGCAGTTT- ---TTT--CA GGACCACAG- lemur TATTTCCAAA TAAAGTAGTG -TGCAGTTT- ---TTT--CA GGACCA--G- rabbit TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAG- st_squirrel TATTTCCAAA TAAAGTAGTG -TGCAA-TT- ---TTT--CA GGACCACAG- guinea_pig CATTTCCAAA TAAAGCAGTA -TGCAG-TT- ---TTC--CA GTACCACAG- rat TGCTCCCAAA TAAAGCAGTG -TGCAG-TT- ---TTT--CA GGACCACAGT mouse TGCTTCCAAA TAAAGCAGTG -TGCAG-TT- ---TTT--CA GGACCACAGT hedgehog TTTTTCCAAA TAAAGTAGTG TAGACT-TT- ---TTT--CA AGACCACAG- shrew TATTTCCAAA TAAAGTAGTA -AGCAG-TG- ---TCT--CG GGACCACAG- rfbat TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCGCAG- cpbat TATTTCCAAA TGAAGTAGTG -TTCAG-TT- ---TTC--CA GGATCAGAG- cat TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAG- clouded_leopard TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAG- ferret TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGGCCACAG- dog TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGGCCACAG- pig TATTTCCAAA TAAAGCAGTG -TGCAG-TT- ---TTT--CA GGACCACAG- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TATTTCCAAA TAAAGTAGTG -TGCAC-TT- ---TTT--CA GGACCACAG- cow TATTTCCAAA TAAAGTAGTG -TGCAG-TT- ---TTT--CA GGACCACAG- horse TATTTCCAAA TAAAGTAGTG -TGCCG-TT- ---TTT--CA GGACCACAG- armadillo TACTTCCAAA TAAAGTAGTA -TGCAG-TT- ----TT--CA GGACCACAG- elephant TATTTCCAAA TAAAGTAGCG -TGCAG-TT- ---CTT--CA GGACCACAG- tenrec TATTTCCAAA TAAAGCAGTG -TGCAG-TT- ---TTT--CA GGATCACAG- wallaby TATTTCCAAA TAAAGTCGTG -GGCAT-TT- ---TTTTCCA GCACCACAG- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus CATTTCCAAA TAAAGTCATA -TCCATTTT- ---TTT--CT GTCCTGCTC- chicken TATCCCCA-- --AAGCAGCA -GCCAT-CT- ---TTG--TA AA---GGAA- fugu ---------- --------TG -TGAAG-TT- ---TAA--AA G---AAAGA- tetra ---------- --------TT -TAAAG-TTA GTTTTT--TT G---CAAGA- human TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGATTC chimp TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TT-CAA---- ---GAGATTC gorilla TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGATTC orangutan TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---CAGATTC gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey TGTTTTACTA TC-------T A-TTTTTT-A TC-CAA---- ---GAGTTTC vervet TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC baboon TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC macaque TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC dusky_titi TGTTTTACTA TC-TAAG-TT A-TTTTTT-A TA-CAA---- ---GAGTTTC owl_monkey TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC squirrel_monkey TGTTTTACTA TC-TGAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC marmoset CGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC galago TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC mouse_lemur TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC lemur TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC rabbit TATTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGCTTC st_squirrel TGTTTTACTA TCTTAAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC guinea_pig TATTTTACTA TC-TAAGTTT A-TTTTTT-A AC-CAT---- ---GAGTTTC rat TGTTTTACTA TC-TAGGTTT A-TTTTTT-A TC-CAA---- ---GAGCTTC mouse TGTTTTACTA TC-TAGGTTT A-TTTTTT-A TC-CAA---- ---GAGCTTC hedgehog TGTCTTACTA TC-TAAGTTT ATTTTTTT-A TT-CAA---- ---AAGCTTC shrew CGCTGTACTA TA-T--GTTT A-TTTTTT-A TC-CAA---- ---AAACTTC rfbat TGTTTTACTA TT-GAAGTTT A-TTTTTT-A TC-TAA---- ---GAGCTTC cpbat TGTTTTACTA -----AGCTT A-TTTTTT-A AC-CAA---- ---GAGCTTC cat TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGCTTC clouded_leopard TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGCTTC ferret TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGCTTC dog TGTTTTACTA TC-TAAGTTG A-TTTTTT-A TC-CAA---- ---GAGCTTC pig TGTTTTACTA TC-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGCTTC muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TGTTTTGCTA TA-TAAGTTT A-TTTTTT-A TC-TAA---- ---GAGCTTC cow TATTTTACTA CA-TAAGTTT A-TTTTTT-A TC-CAA---- ---GAGCTTC horse TGTTTTACTA TC-TAAGTTT A-TTCTTT-A TC-CAA---- ---GAGCTTC armadillo TGTTTTACTA TC-TGAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTAC elephant TGTTTTACTA TC-TGAGTTT A-TTTTTT-A TC-CAA---- ---GAGTTTC tenrec AGTTTTACTA TC-TGAGTTT A-TTTTTTAA TC-CAA---- ---GACTTTT wallaby TGCTTTACTA TA-AAAGCTT A-TTTGTT-A TC-AGA---- ---AAGTCT- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- ---------- ---------- ---------- ---------- platypus TCTTTTACTC CA-AAAGCTT C-TTTTTT-A TC-AGA---- ---AAGGCCA chicken TTTTTTTGTC TC-AAAAATG A-CTTTTT-A CC-AAAAGAA GTCAAGATTC fugu TTTTGGACGA TT-TGATTTG A-TTTTTT-A TGTTTA---- ---AAAATGC tetra ATTTAAACCA TT-T----TT A-TTT----A CCGTTA---- ---GCACTGC human CAAATA---- ---------- --AAG----- ---------- -ATGTTAT-- chimp CAAATA---- ---------- --AAG----- ---------- -ATGTTAT-- gorilla CAAATA---- ---------- --AAG----- ---------- -ATGTTAT-- orangutan CAAATA---- ---------- --AAG----- ---------- -ATGTTAT-- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey CAAATA---- ---------- --CAG----- ---------- -ATGTTAT-- vervet CAAACA---- ---------- --CAG----- ---------- -ATGTTAT-- baboon CAAATA---- ---------- --CAG----- ---------- -ATGTTAT-- macaque CAAACA---- ---------- --CAG----- ---------- -ATGTTAT-- dusky_titi CAA------- ---------- ---------- ---------- ---------- owl_monkey CAAATA---- ---------- --CAG----- ---------- -ATGTTAT-- squirrel_monkey CAAATA---- ---------- --CAG----- ---------- -ATGTTAT-- marmoset TGAATA---- ---------- --CAG----- ---------- -ATGTTAT-- galago CAAATA---- ---------- --TAA----- ---------- -ATGTTGT-- mouse_lemur CAAATA---- ---------- --CAG----- ---------- -ATGTTCC-- lemur CAAATA---- ---------- --CAG----- ---------- -ATGTTAC-- rabbit CAAATA---- ---------- --CAG----- ---------- -ATGTTAT-- st_squirrel CAAATA---- ---------- --AAG----- ---------- -ATGTTGT-- guinea_pig CAATTG---- ---------- --TAG----- ---------- -GTACTAT-- rat CAAATA---- ---------- --CAG----- ---------- -GTTTTATAG mouse CAAATA---- ---------- --CAG----- ---------- -GTTTTAT-- hedgehog CAAAAG---- ---------- --CACCACAC TATCATTTGT AGCTCCAG-- shrew TAG------- ---------- ---------- ---------- ---------- rfbat CAAGTG---- ---------- --CAT----- ---------- -ATTTCAG-- cpbat CAAGTGAA-- ---------- TACAT----- ---------- -ATTTCAA-- cat CACGTG---- ---------- --CAT----- ---------- -ATTTCAA-- clouded_leopard CACGTG---- ---------- --CAT----- ---------- -ATTTCAA-- ferret CAAGTG---- ---------- --CAT----- ---------- -ATTTCAA-- dog CAAGTG---- ---------- --CAT----- ---------- -ATTTCAT-- pig CAAG------ ---------- --CAT----- ---------- -ATTTGAA-- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep CAAGTG---- ---------- --CAG----- ---------- -ATTTCAA-- cow CAAG------ ---------- --CAG----- ---------- -ATTTCAG-- horse CAAGTG---- ---------- --CAT----- ---------- -ATTTCAA-- armadillo CAAATA---- ---------- --CAG----- ---------- -ATGTTAT-- elephant CAAACG---- ---------- --CAG----- ---------- -ATGTTAT-- tenrec CAAAT----- ---------- ---------- ---------- --CGTTAC-- wallaby ---ATG---- ---------- --TGG----- ---------- -ATGGTAT-- monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---ATG---- ---------- --TGG----- ---------- -AAAGTAT-- platypus CAAGTA---- ---------- --GAG----- ---------- -ATGTTAG-- chicken AAA---GGAA AGTTATTTTT TCTAC----- ---------- -ATTTTAG-- fugu GGA------- ---------- ---------- ---------- ---------- tetra G--------- ---------- ---------- ---------- ---------- human AGAAAAAAAT GCAAACATAA CAGAAATA-G ACTAAC-T-T TTTTTT---- chimp AGAAA----- -------TAA CAGAAATA-G ACTAAC-T-T TTTTTT---- gorilla AGAAA----- -------TAA CAGAAATA-G ACTAAC-T-T TTTTTT---- orangutan AGAAA----- -------TAA CAGAAATAGG ACTAAC-T-T TTTTTT---- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey AGAAA----- -------TAA CAGAAATA-G ACTAAC-T-T TTTTTT---- vervet AGAAA----- -------TAA CAGAAATA-G ACTAAC-T-T TTTTTT---- baboon AGAAA----- -------TAA CAGAAATA-G ACTAAC-T-T TTTTTT---- macaque AGAAA----- -------TAA CAGAAATA-G ACTAAC-T-T TTTTTT---- dusky_titi ---------- -------TAA CAGAAATA-G ACTAAC-TTT TTTTTT---- owl_monkey AGAAA----- -------TAA CAGAAATA-G ACTAAC-TGT TTTTTT---T squirrel_monkey AGAAC----- -------TAA CAGAAATA-G AATAAC-TGT TTTTTT---- marmoset AGAAA----- -------TAA CAGAAATA-G ----AC-TGT TTTTTT---- galago AGAAA----- -------TAA CAGAAATA-A ACTAAC-T-T TTTTTTTTTT mouse_lemur AGAAA----- -------TAA CAGAAATA-G AATAAC-A-T TTTTTT---- lemur AGAAA----- -------TAA CAGAAATA-G AATAAC-A-T TTTTTT---T rabbit TTTAA----- -------TGA CAGAAATA-G -------ACA TTTTTC---- st_squirrel AGAAA----- -------TAA CAGAAATA-G AATTTT-TTT TTTTTT---- guinea_pig GGAAA----- -------TAA CTAAAACA-A -------ATA TTCTTT---- rat AAAAA----- -------TAA CAGAAGTA-G AAAAAC-ATA TTCTTA---- mouse AAAAA----- -------TAA CAGAAGCA-G AAACAC-ATA TTCTTT---- hedgehog TTGAA----- -------t-- ---CAATA-G GCAAAT-A-T TCTGTT---- shrew ---------- --------G- CAAAAATA-G ACAACT-A-A CCTTTT---- rfbat TGAAA----- -------TA- CAGAAATA-G ACAAAC-A-T TCTTTT---- cpbat TGAAA----- -------TAA CAAAAATA-G ACAAAC-A-T TCTTTT---- cat TGAAA----- -------TAA CAGAAATA-G ACAAAC-A-T TATTTT---- clouded_leopard TGAAA----- -------TAA CAGAAATA-G ACAAAC-A-T TATTTT---- ferret TGAAA----- ---------- ---------- ---------- ---------- dog TGAAA----- -------TAA CAGAAATA-G ACAAAT-A-T TATTTT---- pig TGAA------ -------TGA CAGAAATA-G ACAAAA-A-T TCTTTC---- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TGAA------ -------TAA CAAAAATA-G AT-----A-T ACTTTT---- cow TGAA------ -------TAA CAAAAATA-G AT-----A-T ACTTTT---- horse TCAAA----- -------CAA CAGAAATA-G ACAAAC-A-T TCTTTT---- armadillo AGAAA----- -------TAG CAGAAATA-C ACAAAC-A-T TC-TTT---- elephant AGGAA----- -------TAA CAGAAATA-G ACAAAC-A-T TCTTTT---- tenrec AGGAA----- --------AA CAGAAATA-G ATAAAC-A-T TCTTTT---- wallaby GGAAA----- -------TAA CAGAAATA-G ACAAAT-G-T TCTTTA---- monodelphis ---------- ---------- ---------- ---------- ---------- opossum GGGAA----- -------TAA CAGAAATA-G ACAAAT-G-T TCTTTA---- platypus GAAAA----- -------AAA T-GCAACA-G ACCAAT-G-T GCTTGT---G chicken Caaca----- ---------- ---------- ---------- ---------- fugu ---------- -------TAA AGAAACTC-C ---GAGGC-T TCTTGG---- tetra ---------- -------TAA AATAACTC-C CCCAAAGT-T TCTTGG---- human AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA chimp AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA gorilla AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA orangutan AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA vervet AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA baboon AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA macaque AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA dusky_titi AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA owl_monkey AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA squirrel_monkey AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA marmoset AGTATGGAAA CA-----AA- -----AAT-- ----C-TTCC CAGATATTTA galago AGCATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA mouse_lemur AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA lemur AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA rabbit AGTATGGAAA CA-----AA- -----ATT-- ----C-TCCC TAGACATTTG st_squirrel AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA guinea_pig ATTGTGGAAA CA-----AA- -----TTT-- ----C-CTCC CAGATATTTA rat AAAATGGAAC CA-----AA- -----ATT-- ----C-TTCC CTGATATTTA mouse TAAATGGGAC CA-----AA- -----ATT-- ----C-TTCC CAGATATTGA hedgehog AGCAGCAAAA CA-----AA- -----GTT-- ----T-TTCC CAGATAGTTA shrew A--ATGGAAA CT-----AA- -----ATT-- ----C-TTCC CAGATATTTA rfbat AGCATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA cpbat AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA cat AGTATAGAAA CA-----GA- -----ATT-- ----C-TTCC CACATATTTA clouded_leopard AGTATAGAAA CA-----GA- -----ATT-- ----C-TTCC CACATATTTA ferret ---------- ---------- ---------- ---------- ---------- dog AGTATAGAAA CA-----CA- -----ATT-- ----C-TTCC CACATATTTA pig AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC AAGATATTTA cow AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA horse AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA armadillo AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA elephant AGTATGGAAA CA-----AA- -----ATT-- ----C-TTCC CAGATATTTA tenrec AGTGCGGCAA AA-----AA- -----AAT-- ----C-TTCC CTGGTATTTA wallaby AGTATGGAAA CT-----GG- -----ATTAT TTTTT-TCTC CAGATATTTA monodelphis ---------- ---------- ---------- ---------- ---------- opossum AGTATGAAAA CT-----GG- -----ATT-T TTTTT-CCTT TAGATATTTA platypus AACATGGAAA CT-----TG- -----ACT-- ----CTTTTC CAGATATTCA chicken ----TGAAAA CACACGGAA- -----AGC-- ----A-TCTC AAGAGTTCTA fugu ACTCTGGACG TA-----AAC ACGATGTT-- ----T-TCC- ---------- tetra AGTATGGACA CA-----AA- -----GTT-- ----C-TCC- ---------- human TTGTTAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- chimp TTGTTAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- gorilla TTGTTAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- orangutan TTGTTAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey TTGTTAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- vervet TTGTTAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- baboon TTGTTAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- macaque TTGTTAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- dusky_titi TTGTTAGGAA AATCTA---- -------ATC TA---AAAAT TCTTCTTC-- owl_monkey ATGTTAGGAA AATCTA---- -------ATC TA---AAAAT TCTTCTTC-- squirrel_monkey TTGTTAGGAA AATCTA---- -------ATC TA---AAAAT TCTTCTTC-- marmoset TTGTTAGGAA AATCTA---- -------ATC TA---AAAAT TCTTCTTC-- galago TTGATAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- mouse_lemur TTGATAGGAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- lemur TTGATAGGAA AATATA---- -------ATC TA---AAAAT TCCTCTTC-- rabbit CTGATAGGAA AATATA---- -------ATC TA---AAAAT TCTCTTTC-- st_squirrel TTGATAGAAA AATATA---- -------ATC TA---AAAAT TCTTCTTC-- guinea_pig TTGATAGGAA AATATA---- -------ACC TC---AAATG TCTCCTGC-- rat TTGATAGGAA AATCTA---- -------ATC TG---AATAT TCTTCTTC-- mouse TTGATCGGAA AATCTA---- -------ATC TA---CAAAC TCTTCTTG-- hedgehog TTGATAGGAA AATGTA---- -------G-- ---------- ---------- shrew TTGATAGGAA AATATA---- ---------- -----AAAAT TCTTCTCC-- rfbat TTGATAGGAA AATAGA---- -------ATC TA---AAAAT TCTCCTTC-- cpbat CTGATAGGAA AATTTA---- -------ATC TA---AAAAT TCCTCTTC-- cat TTGATAGAAA AATATA---- -------ATC TA-------- ---------- clouded_leopard TTGATAGAAA AATATA---- -------ATC TA-------- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog TTGAATGAAA AATAGA---- -------ATC TA-------- ---------- pig TTGATAGGAG AATATA---- -------ATC TA-------- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TTGATAGGAA AATATA---- -------ATC TA-------- ---------- cow TTGATAGGAA AATATA---- -------ATC TA-------- ---------- horse TTGATAGGAA AACATA---- -------ACC TA-------- ---------- armadillo TTGATAGGAA AATCTA---- -------ATC TA---AAAAT TCTTCTTC-- elephant CTGACAGAAA AATAGA---- -------ATC TA---AAAAT GCTTCTTC-- tenrec TTGATAGGAA AATAGA---- -------ATC TA---AAAAT TCTTCTTC-- wallaby TTGATGGGAA AAAAAT---- ---------- -----AAAAT GCCTTTTC-- monodelphis ---------- ---------- ---------- ---------- ---------- opossum TTAATGGGAG AAAAAC---- ---------- -----AAAAT GCCTTTTC-- platypus TTGCTGGGAA AAAAAA---- ---------- -----AAAAC CCCTTTCT-- chicken CTGATTGGAG AAATGAAACA AGAAACAACC AA-------- ---------- fugu ---------- ---------- ---------- --TCTGCAAC C-----TCCC tetra ---------- ---------- ---------- --TCTGCCAC CCTTCATCCC human ---CATCTGC TATTTCATGT TCTGG-AAAG AT-AAATATT TGTAT-ATAC chimp ---CATCTGC TATTTCATGT TCTGG-AAAG AT-AAATATT TGTAT-ATAC gorilla ---CATCTGC TATTTCATGT TCTGG-AAAG AT-AAATATT TGTAT-ATAC orangutan ---CATCTGC TATTTCATGT TCTGG-AAAG AT-AAATATT TGTAT-ATAC gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ---CATCTGC TATTTCATGT TCTGC-AAAG AT-AAATATT TGTAT-ATAC vervet ---CATCTGC TATTTCATGT TCTGC-AAAG AT-AAATATT TGTAT-ATAC baboon ---CATCTGC TATTTCATGT TCTGC-AAAG AT-AAATATT TGTAT-ATAC macaque ---CATCTGC TATTTCATGT TCTGC-AAAG AT-AAATATT TGTAT-ATAC dusky_titi ---CATCTGC TGTTTCATGT TCTGG-AAAA AT-AAATATT TATGT-ATAC owl_monkey ---CATCTGC TATTTCATGT TCTGG-AGAA AT-AAACATT TATAT-ATAC squirrel_monkey ---CATCTGC T--------- ---------- ---------- ---------- marmoset ---CATCTGC TATTTCATGT TCTGG-AAAA AT-AAATATT CATAT-ATAC galago ---CATCTGC TATTTCATGT TCCAG-AAAG AT-AAATATT TATAG-ATAC mouse_lemur ---CATCTGC TATTTCATGT TCCGG-AAAG AT-AAATATT TATAT-ATAC lemur ---CATCTGC TATTTTATGT TCCGG-AAAG AT-AAATATT TATAC-ATAT rabbit ---CATCTAC AATTTAATGT TCCAG-AAAG AT-AAATAAT AATAT-ATGC st_squirrel ---CATCTGC TATCTCATGT TCCAG-GAAG AT-AAAGATT TATAT-ATAC guinea_pig ---CACTTGC CACATTATAT TCTGG-AAAG GC-AAATATT TATAT--TAT rat ---CATTTGC TACTTCATGT TCCGG-AAAG AT-AGATTTT AATAT-ATAC mouse ---CATTTGC TACTTCATGT TCCGG-AAAG AT-AAATTTT AATAT-ATAC hedgehog ---------- -ACCTCATGT TCTGG-AGAG AT-AAAtatt tatat-ataa shrew ---CAGCTGC TATCTTGTGT TCAGA-AAAG AT-AAATATT TATAA-ATGC rfbat ---CATCTGC TATTTCATGT TCTGA-AAAG AT-AAATATT TATAT-ATAC cpbat ---CATCTGC TATTACACGT TCTAG-AAAG AT-AAATATT TATAT-ATAC cat ---CATCTGC TATTTCATGT TGTAG-ACAG AT-AAATATT TATGT-ATAC clouded_leopard ---CATCTGC TATTTCATGT TGTAG-ACAG AT-AAATATT TATGT-ATAC ferret ---------- ---------- ---------- ---------- ---------- dog ---CATCTGC TATTTCATGT TCTGG-AAAG AT-AAATATT TATAT-ATAC pig ---CATCTGC TATTTAATGT TCTGG-AAAG AT-AAATATT TACAC-ATGC muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep ---CATCTGC TATTTCATGT TCTGG-AAAG AT-AAATATT TATATAATAC cow ---CATCTGC TATTTCATGT TCTGG-AAAG AT-AAATATT TATACAATAC horse ---CATCTGC TATTTCATGT TCTGG-AAGG AC-GAATATT TATAC-ATAC armadillo ---CATCTGC TATTTCATGT TCTGG-AAAG AT-AAATATT TATAT-ATAC elephant ---CATCTGC TATTTCATGT TCCAG-AGAG AT-AAATATT TATAT-ATAC tenrec ---CATCTGC TATTTCATGT CCCAGAAAAG ATAAAA---- ------GTGT wallaby ---------- -ATTTTGTGT TCCAG-CAAG AT-AAATACT AAGCC-ACAA monodelphis ---------- ---------- ---------- ---------- ---------- opossum ---------- -ATTTTATGT TCCAA-AAAG AT-AAATATT AATGC-ACAA platypus ---CATCTGC TATTTCGTGT TCTGG-AAAG AT-AAATATT TACGT-GTCC chicken ---CATCTCC TTTGCCATGT TCAGG-AAAG AT-A--TATT TGTAT-ATAA fugu CTC------- ---------- ---------- ---------- ---------- tetra CTC------- ---------- ---------- ---------- ---------- human -AGCA----T TTCAGAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG chimp -AGCA----T TTCAGAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG gorilla -AGCA----T TTCAGAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG orangutan -AGTA----T TTCAGAAATC AAT--GGAAT ACTCAAACGA -TTAAACAGG gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey -AGTA----T TTCATAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG vervet -AGTA----T TTCGTAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG baboon -AGTA----T TTCATAAATC CAT--GGGAT ACTCAAAAGA -TTAAATAGG macaque -AGTA----T TTCATAAATC CAT--GGGAT ACTCAAAAGA -TTAAACAGG dusky_titi -AGTA----T TTCAGAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG owl_monkey -AGTA----T ATCAGAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset -AGTA----T TTCAGAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG galago -AGTA----T TTCAGAAATC AAT--GGGAT ACTCAAAAGA -TTAAACAGG mouse_lemur -AGTA----- TTCAGAAATC AAT--GGGAT ACTCAAAAAA -TTAAACAGG lemur -AATA----- TTCAGAAATC AAT--GGGAT ACTCAAAAAA -TTAAACAGG rabbit -AATA----T TCCGGAAGTC AAC--GGGAT ACTCAGAATA -TTAAACAGG st_squirrel -AGTA----T TCCAGAAATG AAT--GGGAT ACTCAAAAGA TTTAAACAGG guinea_pig -GGTA----T CTCAGAAATC AAC--AGTAC ACTCAAAAGA -TTAAACATA rat -AATA----C TCCAGATGTC AAT--GAGAT ACGTAGAAGG -CTAAACAGG mouse -AGTA----C TCCAGATGTC AATGAGAGAT ACTCAGAAGG -CTAAACAGG hedgehog -agta----t tataaaaatC AAT--AGA-T ATGCTAAAGA -TTAAACAGG shrew -AGTA----C ACTAAAAATC AAT--GGG-- ACTCAGAAGA -TTAAACAGG rfbat -AGTT----T TCCAGAAATC AAT--AGAAT ACTGAAAAGA -TTAAACAGG cpbat -AGTA----T TCCAGAAATC AAT--AGGAT ATTCAAAAGA -GGAAACCAG cat -AATA----T TCCAGAAATG AAT--GGGAT AGTCAAAAGA -TTAAACAGG clouded_leopard -AATA----T TCCAGAAATG AAT--GGGAT AGTCAAAAGA -TTAAACAGG ferret ---------- ---------- ---------- ---------- ---------- dog -AGTA----T TCCAGAAATG AAT--GGGAT AATCAGAAGA -TTAAACAGG pig -AGTATTCCT TCCAGAAATC AAT--GGGAT AATCAAAAGA -TTAAACAGG muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep -AGCA----T TTCAGAAATC AAT--GGGAT ACTCAAAAGT -TTAAACAGG cow -TGTA----T TTCAGAAATC AAT--GGGGT ACTCAAAAGT -TTAAACAGG horse -AGTA----T TCCAGAAATC AAT--GGAAT ACTCAAAAGA -TTAAACAGG armadillo -AGTA----G TCCAGAAATC AAT--GGGAT ACTCAAAATA -TTAAGGGGG elephant -AGCA----G TCCAGAAATC AAT--GGGAT ACTTAGGAGA -TTAAACAGG tenrec -AGCA----G TCCAGAACTC AAT--AGAA- -------AAT -TTAAACGGG wallaby -AGTA----G TCTAGAAATC AAT--GGGAG ACTCAAAAGA -TTAAACAGA monodelphis ---------- ---------- ---------- ---------- ---------- opossum -AATA----G TCTAGAAACC AAG--GAGAG GCTGAAAATA -TTAAACAGC platypus AAGTC----C TGCTGAAATC AAT--GGATC CCTCCAAAGA -TTAAACAGG chicken -AACA----C TACAATAATC AAA--GTCAT GCTCA-AAGT -TTAAACAGG fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AACATCCTTT ACTTATGGAA CACAGGATAA AATAAATTGT CTTAATATCA chimp AACATCCTTT ACTTATGGAA CACAGGATAA AATAAATTG- ---------A gorilla AACATCCTTT ACTTATGGAA CACAGGATAA AATAAATTG- ---------A orangutan AACATCCTTT ACTTATGGAA CACAGGATAA AATAAATTG- ---------A gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey AACATCCTTT ACTTATGGAA CACAGGATAA CATAAATTT- ---------A vervet AACATCCTTT ACTTATGGAA TATAGGATAA CATAAATTT- ---------A baboon AACATCCTTT ACTTATGGAA CACAGGATAA CATAAATTT- ---------A macaque AACATCCTTT ACTTATGGAA CACAGGATAA CATAAATTT- ---------A dusky_titi AACATCCTTT ACTTATGGAA CACAGGATAA AATAAATTG- ---------A owl_monkey AACATCCTTT ACTTATGGAA CACAGGATAA AATAAATTG- ---------A squirrel_monkey ---------- ---------- ---------- ---------- ---------- marmoset AACATCTTTT ACTTATGGAA CACAGG---- -ATAAATTG- ---------A galago AACATCCTTT ACTTATGGAA AACAGGATAA AGTAAATTG- ---------A mouse_lemur AACATCCTTT ACATATGGAA AACAGGATAA AATAAATTG- ---------A lemur AACATCCTTT ACATATGGAA AACAGGATAA AATAAATTG- ---------A rabbit AACATCCTTT ACTTGTGGAA AACAGGATAA AATAAA-TG- ---------A st_squirrel AACATCCTTT ACTTACGGAA AACAGGATAA AATAAATTG- ---------A guinea_pig AACA------ --TTATAGAA AACAGGATAA AATAAAATG- ---------A rat AAAATCCTTT ACTTATGGAA AACAGGATAA AATAAAGTG- ---------A mouse AAAATCCTTT ACTTATGGAA AACAGGATAA AATAATGTG- ---------A hedgehog AACATCCTTT CCTTGTGAAA AACAAGataa aataaatTG- ---------A shrew AACATCCTTT ACTTATGGAA AACAGGATAA AATAAATTG- ---------- rfbat AATATCCTTT CCTTATGGAC AACAGGATAA AATAAATTG- ---------- cpbat ACTACCTTTC ACTTATGGAA AACAAAGTAA CATAAATTG- ---------- cat AACATCCTTT ACTTATGGAA AACAGGATAA AATAAGCTG- ---------- clouded_leopard AACATCCTTT ACTTATGGAA AACAGGATAA AATAAATTG- ---------- ferret ---------- ---------- ---------- ---------- ---------- dog AACATCCTTC ACTTATGGAA AACAGGATAA AATAAATTG- ---------- pig AACATCCTTT ACTTATGGAA AACAGGATAA AATTAATTG- ---------- muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep AACATCCTTT ACTTATGGAA AACAGGATAA AATAAATTA- ---------- cow AACATCCTTT ACTTATGGAA AACAGGATAA AATAAATTG- ---------- horse AACATCCTTT ACTTATGGAA AACA-GATAA AAT-AACTG- ---------- armadillo AACATCCTTC ACTTATGGAA AACAGGATAA AATAAATTG- ---------A elephant AACATCCTTT ACTTATGGAA AACAGGATAA AATAAATTG- ---------G tenrec AACATCCTTT ACTTATGGAA AACAGGATAA AATAAATTG- ---------G wallaby GACATCATTC CCTCACAGAA AACAGGATAA AATAAACTG- ---------A monodelphis ---------- ---------- ---------- ---------- ---------- opossum TACATCAGTC TCTCTTGGAA AATAGGATAA AATAAATTA- ---------A platypus AACATCCTTC TCTTATGGAA AACAAGATAA AATGAATTA- ---------C chicken AACATC---- -CTTATAAAA CAAAGGTTGA ACTGACT--- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human ATTCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- G-ATCTCTGA chimp ATTCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- G-ATCTCTGA gorilla ATTCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- G-ATCTCTGA orangutan ATTCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- G-ATCTCTGA gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey ATGCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- A-ATCTCTGA vervet A-GCATGAG- AGGTGTGAT- -TTCAAACAA -A----AGT- A-ATCTCTGA baboon ATGCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- A-ATCTCTGA macaque ATGCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- A-ATCTCTGA dusky_titi ATGCATGAG- AGGTGTGAT- -TTAAAACAA -G----GGT- G-ATCTCTGA owl_monkey ATGCATGAG- AGGTGTGAT- -TTAAAACAA -G----GGT- G-ATCTCCGA squirrel_monkey -TGCATGAG- AG-TGTGAT- -TTAAAACCA -G----GGT- G-ATCTCTGA marmoset ATGCATGAG- AGGTGTGAT- -TTAAAACCA -G----GGT- G-ATCTCTGA galago ATGCATGAG- AGGGGTGAT- -TTAAAACAA -A----AAT- G-ATTTTTGA mouse_lemur ATGCATGAG- AAGTGTGAT- -TTAAAATAG -A----AGT- G-ATTTCTGA lemur ATGCATGAG- AGGTGTGAT- -TTAAAACAG -A----AAT- G-ATTTCTGA rabbit ATACATGAGT TG-TGCGAT- -TTTAAACAA -A----AGT- G-ATCTCTGA st_squirrel ATGCATGAG- AA-AGTGAT- -TTTAAACAA -A----AGT- G-ATCTCTGC guinea_pig ATGCATGAG- AG-TGCGAT- -TTAAAACAA -A----AGT- G-ATCTTGGA rat ATGCATGAG- AG-TGTGAT- -TTAAAACAA -A----CGT- G-ATCTCAGA mouse ATGCATGAG- AG-TGTGAT- -TTAAAACAA -A----CGTT G-ATCTCAGA hedgehog ATTTATGAG- AGGTATGAT- -TTAAAACAA -A----AGT- C-ATCTCTCA shrew -TGCATGAG- AGTCACGGG- -TTAAAACAA -A----AAA- CGATCTTTGA rfbat -T--ATGAG- ATATGTGAT- -TTAAAACAA -A----AGT- G-ATCTCTGG cpbat -TGCATGAG- AGATGTGGT- -TTAAAACAA -AACTGAGT- G-ATCTCTGA cat -TGCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- G-ATCTCTGA clouded_leopard -TGCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- G-ATCTCTGA ferret -TGCATGAG- AGGTGTGAT- -TT-AAACAA -A----AGT- G-ATCTCTGA dog -TGCATGAG- A---GTGAC- -CTAAAACAA -A----CGG- G-ATCCCCTA pig -TATATGAG- AGGTGCTAT- -TTGAAACAA -A----AGT- G-ATCTCTGA muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep -TGCATGAG- AGGTGTGAT- -TCAAAACAA -A----AGT- G-ATCCCTGA cow -TGCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGT- G-ATCTCTGA horse -TGCATGAG- AGGGGTGAT- -TTAAAACAA -A----AAT- G-ATCTCTGA armadillo ATGCATGAG- AGGTGTGAT- -TTAAAACAA -A----AGG- G-ATCTCTAA elephant ATGCATGAG- A-GTGTAAT- -TTAAAACAG -A----AGT- G-ATCTCTAA tenrec ATGCATGAG- AGGTGT---- ---AAAACAA -A----AGT- G-ATCTCTAA wallaby ATCCATGAG- AGGTGTGACG GCGT---CAA -A----CAT- T-AGCTCTAG monodelphis ---------- ---------- ---------- ---------- ---------- opossum ATACATGAG- AGGTGTGACA GCC------- -A----AAA- T-AGTTCTAG platypus A-CTATGAG- A--------- ---------- ---------- ---------- chicken A-CCATGAG- ---------- ---------- ---------- ---------- fugu -TACATAAG- GGGAGAGAC- -TTaaacaaa caaCTTAAC- A-TTTCCTGG tetra -TACATAGG- GGGCGAGAC- -TTAAAGCAG CAAC--AAC- A-CTTCCTGT human GC-------A GAATTTTAGC CACat----- ---------- ------aaaa chimp GC-------A GAATTTTAGC CACat----- ---------- ------aaaa gorilla GC-------A GAATTTTAGC CACat----- ---------- ------aaaa orangutan GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA vervet GC-------A GAATCTTAGC CACAT----- ---------- ------AAAA baboon GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA macaque GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA dusky_titi GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA owl_monkey GC-------A GAATTTTAAC CACAT----- ---------- ------AAAA squirrel_monkey GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA marmoset GT-------A GAATCTTAGC TACAT----- ---------- ------AAAA galago ---------- ---TTTTAGC CACAT----- ---------- ------AAGA mouse_lemur GC-------A GAATTTTAGC TACAT----- ---------- ------AAAA lemur GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA rabbit GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA st_squirrel GC-------A GAATTTTAAC CATACACACA CACACACACA AAAAAAAAAA guinea_pig GG-------A GAATTTTAGC CACAT----- ---------- ------AATA rat GC-------C AAATTTTAGA CACAG----- ---------- ------AATA mouse GA-------- AAATTTTAGA GACAC----- ---------- ------AATA hedgehog AC-------A GAATCTCAGC TGCAT----- ---------- ------AGAA shrew GC-------A CAATTTCAGC TACAT----- ---------- ------AAAA rfbat GC-------A GAATCTCAGC CACAT----- ---------- ------AAAA cpbat GC-------A GAATTTCAGC CACAT----- ---------- ------AAAA cat GC-------A GAATTTCAGT CACAT----- ---------- ------AAAA clouded_leopard GC-------A GAATTTCAGT CACAT----- ---------- ------AAAA ferret GC-------A GACTTTCAGA CACAT----- ---------- ------AAAA dog GC-------A GGATTTCAGC TACAT----- ---------- ------AAAA pig GC-------A GAATTTCAGC CACAG----- ---------- ------AAAA muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TC-------A GAATTCCAAC CACAG----- ---------- ------AAAT cow AC-------A GAATTCCAAC CACAG----- ---------- ------AAAC horse GC-------A GAATTTCAGC CACAT----- ---------- ------AAAA armadillo GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA elephant GC-------A GAATTTTAGC CACAT----- ---------- ------AAAA tenrec GC-------A GAATTTCAGC CACAG----- ---------- ------AAAA wallaby AC-------A GACTTTTAGC CCTGT----- ---------- ------AATA monodelphis ---------- ---------- ---------- ---------- ---------- opossum GC-------A GAATTTTAGC CATGT----- ---------- ------AATA platypus ---------- ---CTTTAGC CCCAT----- ---------- ------AAAA chicken ---------- ---------- ---------- ---------- ---------- fugu TAGTTTCAGG CAG------- ---------- ---------- ---------- tetra TA-------G CAA------- ---------- ---------- ---------- human tgtattattt aatattattt aaCTTCAGCT T----G-TTT TTT----TAA chimp tgtattattt aatattattt aaCTTCAGCT T----G-TTT TTT----TAT gorilla tgtattattt aatattattt aaCTTCAGCT T----G-TTT TTT----TAA orangutan TG-------- --TATTATTT AACTTCAGCT T----G-TTT TTT----TAA gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey GG-------- -----TGTTT AACTTCAGCT T----G-TTT TTT----TAA vervet GG-------- -----TATTT AACTTCAGC- --------TT TTT----AAA baboon GG-------- -----TATTT AACTACAGCT T----G-TTT TTT----TAA macaque GG-------- -----TATTT AACTTCAGCT T----G-TTT TTT----TAA dusky_titi TG-------- --TATTATTT AACTTCAGCT TGTTTT-TTT TTT----TAG owl_monkey TG-------- --TATTATTT AACTTCAGCT T-Gttt-ttt ttt----taa squirrel_monkey TG-------- --TATTATTT AACTTCAGCT TCtttt-ttt ttt----taa marmoset TG-------- --TATTATTT AACTTCAGCT T--GTT-TTT TTA----AAA galago TG-------- --TATTATTT AACTTCAGCT T----G-TTT TCC----ATA mouse_lemur TG-------- --CATCATTT AACTTTAGCT T----G-TTT TAC----AAA lemur TG-------- --TATCATTT AACTTTGGCT T----G-TTT TCC----AAA rabbit TC-------- --TATTATTC AACTCCAGCT T----G-TGT TTC----AAA st_squirrel AA-------- --CATTATTT AACTTCA-CT T----G-TTT TTC----AAA guinea_pig TG-------- --TATTACTT AGCTCCAGCT T----G-TTT TTC----AAA rat TG-------- --TATTATTT AACTTCAGCT C----C-TTT CTC----AAA mouse TG-------- --TATTATTT AACTTCAGCT C----A-TTT CTC----AAA hedgehog TG-------- --TATTATTT ATCTT--GTT T----G-TTT TCC----AAA shrew TA-------- --TATTGTTC AACTTCAGCT T----G-TTT TTC----AAA rfbat TG-------- --CATTATTT AACTTCAGCT T----G-TTT TTC----CAA cpbat TG-------- --TATTATTT AACTTGAGCC T----G-TTT TTC----AAA cat TG-------- --TATTATTT AACCTCAGCT C----G-CTT TTC----AAA clouded_leopard TG-------- --TATTATTT AACCTCAGCT C----G-TTT TTC----AAA ferret TG-------- --TATTATTT AACCTCAGCT T----G-TTT TTC----AGA dog TG-------- --TATTATTT AACCTCAGCT T----G-TTT TTC----AAA pig TG-------- --CATTATTT AACGTCATCT T----G-TTT TTC----AGA muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TG-------- --TATTATTT AACTTCAACT T----A-TTT TTC----AAA cow TG-------- --TATTATTT AACTTCAACT T----A-TTT TTC----AAA horse TG-------- --TATTATTT AACTTCAGCT T----G-TTT GTC----AAA armadillo TG-------- --TATTATTT AACTTCCACT T----G-TGT TTC----AAA elephant TG-------- --TGTTACTT AACTTCAGCT T----GTTTT TTC----AAA tenrec GG-------- --TG------ AACTCCCGCA T----G-TTT TTC----AAA wallaby TG-------- --TATTATTT AAAT--AA-C T----G-TTT TTTTAAAAAA monodelphis ---------- ---------- ---------- ---------- ---------- opossum TG-------- --TATTATTT AACT--AGTC T----G-TTT TTC----AAA platypus TG-------- --TATTATTT AACTTCAGCC T----A-TTT TAC----AAA chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTGCATTAAT ATTTAACTAC CAGGCAGCTG TGATTGCAAG TATAT--CAT chimp CTGCATTAAT ATTTAACTAC CAGGCAGCTG TGATTGCAAG TATAT--CAT gorilla CTGCATTAAT ATTTAACTAC CAGGCAGCTG TGATTGCAAG TATAT--CAT orangutan CTGCATTAAT ATTTAACTAC CAGGCAGCTG TGATTGCAAG TATAT--CAT gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey TTGCATTAAT ATTTAACTAC CGAGCAGCTG TGATTGCAAG TATAT--CAT vervet TTACATTAAT ATTTAACTAC CAGGCAGCTG TGATTGCAAG TATAT--CAT baboon TTGCATTAAT ATTTAACTAC CAGGCAGCTG TAATTGCAAG TATAT--CAT macaque TTGCATTAAT ATTTAACTAC CAGGCAGCTG TGATTGCAAG TATAT--CAT dusky_titi TTGCATTAAT ATTTAACTAC CAGGCAGCTA TGATTGCTAG TATAT--TAT owl_monkey ttGCAGTAAT ATTTAACTAC CAGGCAGCAT TGATTGCCAG TATAT--TAT squirrel_monkey ttGCATTAAT ATTTAACTAC CAGGCAGCAT TGATTGCAAG TATAT--TAT marmoset TTGCATTAAT ATTTAACTAC TAGGCAGCAT TGATTGTAAG TATAT--TAT galago TTACATTAAT ATTTAACTAT TAGGCAGCTG TGATTGCAAG CATAT--CAT mouse_lemur TTACATTAAT ATTTAACTAT TAGATAGCTG TGATTGCAAG TATAT--CAT lemur TTACATTAAT ATTTAACTAA GAGGTAGCTG TGATTGCAAG TATAT--CAT rabbit TTATATTAAT ATTTAACTAC CAGGTAGCTG TGATTGCAAA CATAT--CAT st_squirrel TTATATTAAT ATTTAACTAT CAGGAAGCCA TGATTGTAAG TATAT--CAT guinea_pig TTACACCAGT GTTTAACTAT CAGGCAACTG TGATTGTAAG TATAA--CAT rat CTACATTAAT ATTTAACTAT CAGGCAGCTA TGA------- --TAG--CAT mouse TTACATTAAT ATTTAACTAC CGGGTAGCTA TGA------- --TAT--CAT hedgehog TTGCA-TAAT ATTTAACCAG CATGTACTTG TGATTGTAAG TAaattataC shrew TTGCATTGAT ATTTAACTAT CAGACAACTG AGATTACAAG TA-----CAT rfbat TTACATTAAT ATTTAACGAT ---------- ---TTGCAAC TATAT--CAT cpbat TTACATTAAC ATTTAACCTT CAGGCAGCTG TGATTGCAAG TATAT--CAT cat TTACATTAAT ATTTAGCCAT CAGGCAGCTG TGATTGCAAG TATAT--CAT clouded_leopard TTACATTAAT ATTTAGCCAT CAGGCAGCTG TGATTGCAAG TATAT--CAT ferret TTTCATTAAT GTTTAACAAT CAGGCAGCTG TGATTGCAAG TATAT--CAT dog TTACATTAAT ATTTAACAAT CAGGCAGCTG TGATTGTAAG TATAT--CAT pig TTACATTAAT ATTTAACTAT CAGGCAGCTG TGATTGCAAA TAT-T--CAT muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TTGCATTAAT ATTTAACTAT CAGGCAGCTG TGATTGCAAG TATAT--TAT cow TTACATTAAT ATTTAACTAT CAGGCAGCTG TGATTGCAAG TATAT--TAT horse TTACATTAAT ATTTAACCAT CAGGCAGCTA TGATTGCAAG TATAT--CAT armadillo TTACA-TACT ATTTAACTAT CAGGCAGCTG TGATTGCAAG TATAT--C-- elephant TTACATTAAT ATTTAACTAT CAGGCAGCTG TGACTGCAAG TATAT--CAT tenrec TTACATTAAT ATTTAACTAT CA-------G CTATTACAAG TCTAT--CAT wallaby TTGCATTAAT ATTTAATGAT CAGGCAGCTG TGATTGAAAG TACAT--TAT monodelphis ---------- ---------- ---------- ---------- ---------- opossum TTACATTAAT ATTTAATTAT CAGGCAGCTG TGATTGAAAG TACAT--TAT platypus TTTCATCAAT ATTTAAGGAT CAGGCAGCTA TAATTGCCAG GACCT--CTT chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human TAATAGATTG CATTCCCA-- -----TATCA T-AACCAAAG A-AATGTTTT chimp TAATAGATTG CATTCCCA-- -----TATCA T-AACCAAAG A-AATGTTTT gorilla TAATAGATTG CATTCCCG-- -----TATCA T-AACCAAAG A-AATGTTTT orangutan TAATAGATTG CATTCCCA-- -----TATCA T-AACCAAAG A-AATGTTTT gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey TAATAGATTG CATTTCCA-- -----TATCA T-AACCAAAC A-AATGTTTT vervet TAATAGATTG CATTTCCA-- -----TATCA T-GACCAAAC A-AATGTTTT baboon TAATAGATTG CATTTCCA-- -----CATCA T-AACCAAAC A-AATGTTTT macaque TAATAGATTG CATTTCCA-- -----TATCA T-AACCAAAC A-AATGTTTT dusky_titi CAATAGATTG CATTCCTA-- -----TATCA TAAACCAAAG A-AATGTTTT owl_monkey CAACAGATTG CATTCCCA-- -----TATCA TAAACCAAAG A-AATGTTTT squirrel_monkey CAATAGATTG TATTCCCAAT TCCCATATCA TAAACCAAAG A-AATGTTTC marmoset CAACAGATTG CATTCCCA-- -----TATCA TAAACCAAAG A-AATGTTTT galago TAATCGATCA TATTCCCA-- -----TATCG T-TACCAAAG A-AATGTTTT mouse_lemur TAATAGATAA CATTCCCA-- -----TATCA T-TACGAAAG A-AACATTTT lemur TAATAGATTA TATTCCCA-- -----TATCA T-TACGAAAG A-AATGTTTT rabbit TAACGGATTA CATTCCCA-- -----TAACA T--ACCGGAG C-AATGTTTT st_squirrel TATTGAATTA CATCCCCA-- -----TATCA T-TACCAAAG A-AATGTTTT guinea_pig TAGTGGGTTA CATTCCCG-- -----TATCA T-AGCTAAAG --AATATTTT rat CAATGGACTG CATGCCCC-- -----TAACA T-AACCAAAG A-AATGTTTT mouse CAATGGATTG CATGCCCC-- -----T--CA T-AACCGAAG A-AATGTTTT hedgehog TGATAGACTA CATTCCCA-- -----CATCA T--ACCAAGG A-CATATTTT shrew TAATGCACTA TATTCCTG-- -----T---- ---------- -------TTT rfbat GAATGGACTA CATTCCCA-- -----TGTCA T--ACCAAAG A----AT--- cpbat CAGTGGACTA ------CA-- -----AATCA T--ACCAAAA A-AGTATTTC cat TAATAGATTA CATTCCCA-- -----TATCA T--ATCAAAG A-AATGTTTT clouded_leopard TAATAGATTA CATTCCCA-- -----TATCA T--ATCAAAG A-AATGTTTT ferret TAATGGATTA CATTCCCT-- -----GATCA T--ATCAAAG A-AATATTTT dog TAATGGGTTA CATTCCCA-- -----TATCA T--ATCAAAG G-AATGTTTT pig TAATGGATTA TATTCCAT-- -----TCTCA T--ACCAAAG A-AATGTTTG muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep TAATGGATTA CATTCCCA-- -----TATCA T--ATCAAAG A-AATCTTTT cow TAATGGATTA CATTCCCA-- -----TATCA T--ATCAAAG A-AATGTTTA horse TAATAGATTA CATACGCA-- -----TATCA T--ACCAAAG A-AATGTTTT armadillo ---------- ---------- -----TATCA T--ACCAAAG A-AATGTTTT elephant TAATAGATTA CATTCCAA-- -----TATCA C--ACCAAAG A-AATGGTCT tenrec TAATGGATGA CATTCCCA-- -----TATCA T--ACCAAAG A-TATGTTCT wallaby TAATGACTTA CATTACCA-- -----TACTA A-AATTTCAC AGAAAATTTT monodelphis ---------- ---------- ---------- ---------- ---------- opossum TAATGACTTA CATTACCA-- -----TATTA A-TGTTGTCT AGAATATTTT platypus TCGTGAATCA CGCACCTG-- -----T---- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human AGCACTTGAA -ATAAAACAC ---------- -AATGAATA- -------ATT chimp AGCACTTGAA -ATAAAACAC -----AAGTA TAATGAATA- ---------- gorilla AGCACTTGAA -ATAAAACAC -----AAGTA TAATGAATA- -------ATT orangutan AGCACTTGAA -ATAAAACAC -----AAATA TAATGAATA- -------ATT gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey AGCACTTGAA -ACAAAACAC -----AAATA TAATGAATA- -------ATT vervet AGCGCTTGAA -ACAAAACAC -----AAATA TAATGAATA- -------ATT baboon AGCACTTGAA -ACAAAACAC -----AAATA TAATGAATA- -------ATT macaque AGCACTTGAA -ACAAAACAC -----AAATA TAATGAATA- -------ATT dusky_titi AGCACTTGAA -ACATAACAC -----AAAT- --ATGAATA- -------ATG owl_monkey AGCACTTGAA -ACATAACAC -----AAATA TAATGAATA- -------ATT squirrel_monkey AGCACTTGAA -ACATAACAC -----AAATA TAATGAATA- -------ATT marmoset AGCACTTGAA -ACATAACAC -----AAATA TAATGAATAT TGACTGTATT galago AGCTCTTGGA -ACAAAATAC AAAATAAATA TGATGACTC- -------ATT mouse_lemur AGCACTGGGA -ACAAAATAC AGGATAAATA TAATGAATA- -------ATT lemur AGCACTGGGA -ACAAAATAC AGGATAAATG TAATGAATA- -------ATT rabbit AACACTTGGA -ATGAAACAC AAGATAAATA TAATGAATA- -------ATT st_squirrel AGCACTTCCA -GTAAAACAC AAGATAAATA TAGTGAATA- -------ATT guinea_pig AGCACTTGGA -ACAAAACAG AAGATAAAAA TAGTTAATA- -------ATT rat AGCAGTTGGA -ACAAAACAT AACATAAATA TAGTGAATA- -------ATT mouse AGCAGTTGGA -GCAAAACAT AACCTAAATA TAGTGAATA- -------ATC hedgehog --CTTTTG-- -------TAC AAAATAAATA TATTGAATA- -------GTT shrew AGCACTTGGA -AGAGAACAC AAACTTAATA TAATGAATA- -------ATT rfbat ---------- ---------- ---------- ---------- ---------- cpbat AGCACTTAGA -ACAAAACAC AAGATAAATA TAATGAATA- -------ATT cat AGCACTTAGA -ACAAAACAC GAGATAAATA TAATGAATA- -------ATT clouded_leopard AGCACTTAGA -ACAAAACAC GAGATAAATA TAATGAATA- -------ATT ferret AGTAGTTGGA -ACAAAATAT GAGATAAATA TAATGAATA- --------TT dog AGCACTTGGA -ACAAGATAT GAGATAAATA TAATGAATA- -------ATT pig AA-------- -ACAAAACAC AATATAAATA TAATGAATA- -------ATT muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep AGCACTTGGG -AAAAAACAC AAGATAAATA TAATGAATA- -------ATT cow AGCACTTGGG AAAAAAACAC AAGATAAATA TAATGAATA- -------ATT horse AGCACTTGGA -ACAAAACAC AAGATAAATA TAATGAATA- -------ATT armadillo AGCACTGGGA -ACACAACAC AAGATAAATA ---TGAATA- -------ATT elephant AGCACTTAGA -ACAAAACAC AAGATAAATA TCATGAATA- -------ATT tenrec AGCACTTAAA -ACAAAACAC AAGATAAATA TAGTGAATA- -------ATT wallaby ACCACTTTG- -GTAGATTGC AAGTTGAATT TGGTGAATG- -------GCT monodelphis ---------- ---------- ---------- ---------- ---------- opossum GCTACTTTGC -CTAGATTAC AAGGTGAATT TGATGAATG- -------GCT platypus ---------- ---------- ---------- ---------- ---------- chicken ---------- ---------- ---------- ---------- ---------- fugu ---------- ---------- ---------- ---------- ---------- tetra ---------- ---------- ---------- ---------- ---------- human CTGTTCA-TT T----ATTT- ---GTTTCAA ATCTCTT-CC TTCCTTCCAA chimp -TGTTCA-TT T----ATTT- ---GTTTCAA ATCTCTT-CC TTCCTTCCAA gorilla CTGTTCA-TT T----ATTC- ---GTTTCAA ATCTCTT-CC TTCATTCCAA orangutan CTGTTCA-TT T----ATTT- ---GTTTCAA ATCTCTT-CC TTCATTCCAA gibbon ---------- ---------- ---------- ---------- ---------- colobus_monkey CTGTTCA-TT T----ATTT- ---ATTTCAA ATCTCTT-CC TTCATTCCAA vervet CTGTTCA-TT T----ATTT- ---ATTTCAA ATCTCTT-CC TTCGTTCCAA baboon CTGTTCA-TT T----ATTT- ---ATTTCAA ATCTCTT-CC TTCACTCCAA macaque CTGTTCA-TT T----ATTT- ---ATTTCAA ATCTCTT-CC TTCACTCCAA dusky_titi CTGTTCA-TT T----ATTT- ---GTTTCAA ATCACTT-CC TTCATTCCAA owl_monkey CTGTTCA-TT T----ATTT- ---GTTTCAA ATCACTT-CC TTCATTCCAA squirrel_monkey CTGTTCA-TT T----ATTT- ---GTTTCAA ATCACTT-CC TTCATTCCAA marmoset CTGTTCA-TT T----ATTT- ---GTTTCAA ATCACTT-CC TTCATTCCAA galago CTGTTCA-TT T----ATTT- ---CTTTCAA ATCTCTT-CC TCCATGCCAG mouse_lemur T--------- ---------- ---------- -TCTGTT-CT TCTATTCCAA lemur T--------- ---------- ---------- -TCTGTT-CC TCCATCCCAA rabbit CTGTTCA-TG T----ACTT- ---ATTCTGA ATCTCTT--G CTCACCCCAA st_squirrel TTGTCCA-TT --------T- ---ATTTTGA ACCTCTT-CC TCCATTCCAA guinea_pig CGTTCCA-TT --------T- ---GTTCTGA ACCTTTT-CC TCCATTTTAA rat CTGTCCA-TT T----ATAT- ---ATTGAGA ATCTCTCACC CCCGTTCCAA mouse CTGTCCA-TT T----ATTT- ---ATTGTGA ACCTCTTCCC CCCGTTCCAA hedgehog T--------- C----ATTT- ---ATT-CAA ATTCCCT-CA TCCATTCCA- shrew C---TTG-CA T----ATTT- ---GTTTCAG ATCTCTT-CC TCAATTCCA- rfbat --TTTCA-TT T----ATTT- ---GTTTCAA ATCTCTC-CC TCCATTCCAA cpbat C-TTTCA-TT T----ATTT- ---GTTTCAA ATCTCTT-CC TCCTTTCCAA cat C---CTA-TT C----ATTTA TCTGTTTCAA ATCTTTT-CC TCCATTCCAA clouded_leopard C---CTG-TT C----ATTTA CCTGTTTCAA ATCTTTT-CC TCCATTCCAA ferret C---CTA-TT T----ATTT- ---GTTTCAG ATCTCTT-CC TCCATTCTAA dog C---CTG-TT T----ATTTA CTTGTTTCAA ATCTCTT-CC TCCATTCCAA pig C---CTG-TT A----ATTT- ---GTTTCAA ATCTCTT-CG TCCATTCTAA muntjak_indian ---------- ---------- ---------- ---------- ---------- sheep C---CTG-TT -----ATTT- ---GTTTCAA ATCTCTT-CC T